Strain identifier

BacDive ID: 135987

Type strain: No

Species: Acetobacter pasteurianus

Strain history: CIP <- 1986, IAM <- T. Asai: strain A10, Acetobacter ascendens

NCBI tax ID(s): 1226663 (strain), 438 (species)

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General

@ref: 35280

BacDive-ID: 135987

keywords: genome sequence, 16S sequence, Bacteria, mesophilic, Gram-negative

description: Acetobacter pasteurianus CIP 103000 is a mesophilic, Gram-negative bacterium of the family Acetobacteraceae.

NCBI tax id

NCBI tax idMatching level
1226663strain
438species

strain history

@refhistory
67770IAM 1808 <-- T. Asai A-10 ("Acetobacter ascendens") <-- IFO 3188 <-- NRRL B-56 <-- N. P. Porges.
35280CIP <- 1986, IAM <- T. Asai: strain A10, Acetobacter ascendens

doi: 10.13145/bacdive135987.20250331.9.3

Name and taxonomic classification

LPSN

  • @ref: 20215
  • description: domain/bacteria
  • keyword: phylum/pseudomonadota
  • domain: Bacteria
  • phylum: Pseudomonadota
  • class: Alphaproteobacteria
  • order: Rhodospirillales
  • family: Acetobacteraceae
  • genus: Acetobacter
  • species: Acetobacter pasteurianus
  • full scientific name: Acetobacter pasteurianus (Hansen 1879) Beijerinck and Folpmers 1916 (Approved Lists 1980)

  • synonyms

    @refsynonym
    20215Acetobacter peroxydans
    20215Acetobacter paradoxus
    20215Acetobacter paradoxum
    20215Acetobacter pasteurianus subsp. ascendens
    20215Bacterium ascendens
    20215Acetobacter ascendens
    20215Acetobacter pasteurianus subsp. paradoxus
    20215Mycoderma pasteurianum

@ref: 35280

domain: Bacteria

phylum: Proteobacteria

class: Alphaproteobacteria

order: Rhodospirillales

family: Acetobacteraceae

genus: Acetobacter

species: Acetobacter pasteurianus

type strain: no

Morphology

cell morphology

@refgram stainconfidence
125438negative96.333
125439negative95.4

Culture and growth conditions

culture medium

@refnamegrowthcompositionlink
35280MEDIUM 1 - for Acetobacter, Azotobacter, Gluconobacter, Gluconacetobacter, Mesorhizodium ciceri and Pseudomonas doudoroffiiyesDistilled water make up to (1000.000 ml);Agar (15.000 g);Yeast extract (5.000 g);Peptone (3.000 g);Mannitol (25.000 g)
35280CIP Medium 1yeshttps://catalogue-crbip.pasteur.fr/fiche_milieu.xhtml?crbip=1

culture temp

@refgrowthtypetemperature
35280positivegrowth30
67770positivegrowth25

Physiology and metabolism

spore formation

@refspore formationconfidence
125438no92.34
125439no97.8

Safety information

risk assessment

  • @ref: 35280
  • biosafety level: 1
  • biosafety level comment: Risk group (French classification)

Sequence information

16S sequences

  • @ref: 124043
  • description: Acetobacter pasteurianus gene for 16S rRNA, partial sequence, strain: NBRC 3188.
  • accession: AB680025
  • length: 1413
  • database: nuccore
  • NCBI tax ID: 438

Genome sequences

@refdescriptionaccessionassembly leveldatabaseNCBI tax ID
66792Acetobacter pasteurianus NBRC 31881226663.3wgspatric1226663
66792Acetobacter pasteurianus NBRC 31882901802297draftimg438
67770Acetobacter pasteurianus NBRC 3188GCA_003850825contigncbi1226663

Genome-based predictions

predictions

@refmodeltraitdescriptionpredictionconfidencetraining_data
125439BacteriaNetoxygen_toleranceOxygenic conditions needed for growthobligate aerobe83.2
125439BacteriaNetgram_stainReaction to gram-stainingnegative95.4
125439BacteriaNetmotilityAbility to perform movementyes77
125439BacteriaNetspore_formationAbility to form endo- or exosporesno97.8
125438gram-positivegram-positivePositive reaction to Gram-stainingno96.333no
125438anaerobicanaerobicAbility to grow under anoxygenic conditions (including facultative anaerobes)no88.082no
125438spore-formingspore-formingAbility to form endo- or exosporesno92.34no
125438aerobicaerobicAbility to grow under oxygenic conditions (including facultative aerobes)yes74.996no
125438thermophilethermophilicAbility to grow at temperatures above or equal to 45°Cno95.712yes
125438motile2+flagellatedAbility to perform flagellated movementyes59.396no

External links

@ref: 35280

culture collection no.: CIP 103000, IAM 1808, IFO 3188, JCM 20273, NBRC 3188, NRRL B-56

straininfo link

  • @ref: 93243
  • straininfo: 25

Reference

@idauthorstitledoi/urlcatalogue
20215Parte, A.C., Sardà Carbasse, J., Meier-Kolthoff, J.P., Reimer, L.C. and Göker, M.List of Prokaryotic names with Standing in Nomenclature (LPSN) moves to the DSMZ10.1099/ijsem.0.004332
35280Curators of the CIPhttps://catalogue-crbip.pasteur.fr/fiche_catalogue.xhtml?crbip=CIP%20103000Collection of Institut Pasteur (CIP 103000)
66792Julia Koblitz, Joaquim Sardà, Lorenz Christian Reimer, Boyke Bunk, Jörg OvermannAutomatically annotated for the DiASPora project (Digital Approaches for the Synthesis of Poorly Accessible Biodiversity Information)https://diaspora-project.de/progress.html#genomes
67770Curators of the JCMhttps://jcm.brc.riken.jp/en/
93243Reimer, L.C., Lissin, A.,Schober, I., Witte,J.F., Podstawka, A., Lüken, H., Bunk, B.,Overmann, J.StrainInfo: A central database for resolving microbial strain identifiers10.60712/SI-ID25.1
124043Isabel Schober, Julia KoblitzData extracted from sequence databases, automatically matched based on designation and taxonomy
125438Julia Koblitz, Lorenz Christian Reimer, Rüdiger Pukall, Jörg OvermannPredicting bacterial phenotypic traits through improved machine learning using high-quality, curated datasets10.1101/2024.08.12.607695
125439Philipp Münch, René Mreches, Martin Binder, Hüseyin Anil Gündüz, Xiao-Yin To, Alice McHardydeepG: Deep Learning for Genome Sequence Data. R package version 0.3.1https://github.com/GenomeNet/deepG