Strain identifier
BacDive ID: 135967
Type strain: 
Species: Lactiplantibacillus plajomi
Strain Designation: NB53
Strain history: CIP <- 2015, NBRC <- BCC <- P. Rattanawaree, Thailand: strain NB53
NCBI tax ID(s): 1457217 (species)
version 9.3 (current version)
General
@ref: 35258
BacDive-ID: 135967
keywords: genome sequence, 16S sequence, Bacteria, mesophilic, Gram-positive
description: Lactiplantibacillus plajomi NB53 is a mesophilic, Gram-positive bacterium of the family Lactobacillaceae.
NCBI tax id
- NCBI tax id: 1457217
- Matching level: species
strain history
- @ref: 35258
- history: CIP <- 2015, NBRC <- BCC <- P. Rattanawaree, Thailand: strain NB53
doi: 10.13145/bacdive135967.20250331.9.3
Name and taxonomic classification
LPSN
- @ref: 20215
- description: domain/bacteria
- keyword: phylum/bacillota
- domain: Bacteria
- phylum: Bacillota
- class: Bacilli
- order: Lactobacillales
- family: Lactobacillaceae
- genus: Lactiplantibacillus
- species: Lactiplantibacillus plajomi
- full scientific name: Lactiplantibacillus plajomi (Miyashita et al. 2015) Zheng et al. 2020
synonyms
- @ref: 20215
- synonym: Lactobacillus plajomi
@ref: 35258
domain: Bacteria
phylum: Firmicutes
class: Bacilli
order: Lactobacillales
family: Lactobacillaceae
genus: Lactobacillus
species: Lactobacillus plajomi
strain designation: NB53
type strain: yes
Morphology
cell morphology
| @ref | gram stain | confidence | cell shape | motility |
|---|---|---|---|---|
| 125438 | positive | 93.963 | ||
| 35258 | rod-shaped | no |
Culture and growth conditions
culture medium
| @ref | name | growth | composition | link |
|---|---|---|---|---|
| 35258 | MEDIUM 40- for Lactobacillus and Leuconostoc | yes | Distilled water make up to (1000.000 ml);Man Rogosa Sharp agar (68.000 g) | |
| 35258 | CIP Medium 40 | yes | https://catalogue-crbip.pasteur.fr/fiche_milieu.xhtml?crbip=40 |
culture temp
- @ref: 35258
- growth: positive
- type: growth
- temperature: 30
Physiology and metabolism
oxygen tolerance
- @ref: 125439
- oxygen tolerance: microaerophile
- confidence: 94.5
spore formation
- @ref: 125438
- spore formation: no
- confidence: 91.013
Isolation, sampling and environmental information
isolation
| @ref | country | origin.country | continent | sample type | geographic location | isolation date |
|---|---|---|---|---|---|---|
| 35258 | Thailand | THA | Asia | |||
| 35258 | Thailand | THA | Asia | Fermented fish, Pla-jom | Yasonthon, Thailand | 2008-08-01 |
Safety information
risk assessment
- @ref: 35258
- biosafety level: 1
- biosafety level comment: Risk group (French classification)
Sequence information
16S sequences
- @ref: 124043
- description: Lactobacillus plajomi gene for 16S ribosomal RNA, partial sequence.
- accession: AB907190
- length: 1492
- database: nuccore
- NCBI tax ID: 1457217
Genome sequences
| @ref | description | accession | assembly level | database | NCBI tax ID |
|---|---|---|---|---|---|
| 66792 | Lactiplantibacillus plajomi NBRC 107333 | GCA_005405405 | scaffold | ncbi | 1457217 |
| 66792 | Lactobacillus plajomi strain NBRC 107333 | 1457217.4 | wgs | patric | 1457217 |
| 66792 | Lactiplantibacillus plajomi NBRC 107333 | 2921431476 | draft | img | 1457217 |
Genome-based predictions
predictions
| @ref | model | trait | description | prediction | confidence | training_data |
|---|---|---|---|---|---|---|
| 125438 | gram-positive | gram-positive | Positive reaction to Gram-staining | yes | 93.963 | no |
| 125438 | anaerobic | anaerobic | Ability to grow under anoxygenic conditions (including facultative anaerobes) | no | 86.77 | no |
| 125438 | aerobic | aerobic | Ability to grow under oxygenic conditions (including facultative aerobes) | no | 96.044 | no |
| 125438 | spore-forming | spore-forming | Ability to form endo- or exospores | no | 91.013 | no |
| 125438 | thermophile | thermophilic | Ability to grow at temperatures above or equal to 45°C | no | 96.5 | no |
| 125438 | motile2+ | flagellated | Ability to perform flagellated movement | no | 88.5 | no |
| 125439 | BacteriaNet | spore_formation | Ability to form endo- or exospores | no | 51.9 | |
| 125439 | BacteriaNet | motility | Ability to perform movement | no | 50.3 | |
| 125439 | BacteriaNet | gram_stain | Reaction to gram-staining | positive | 70.8 | |
| 125439 | BacteriaNet | oxygen_tolerance | Oxygenic conditions needed for growth | microaerophile | 94.5 |
External links
@ref: 35258
culture collection no.: CIP 110952, NBRC 107333, BCC 38054
straininfo link
- @ref: 93224
- straininfo: 414004
Reference
| @id | authors | title | doi/url | catalogue |
|---|---|---|---|---|
| 20215 | Parte, A.C., Sardà Carbasse, J., Meier-Kolthoff, J.P., Reimer, L.C. and Göker, M. | List of Prokaryotic names with Standing in Nomenclature (LPSN) moves to the DSMZ | 10.1099/ijsem.0.004332 | |
| 35258 | Curators of the CIP | https://catalogue-crbip.pasteur.fr/fiche_catalogue.xhtml?crbip=CIP%20110952 | Collection of Institut Pasteur (CIP 110952) | |
| 66792 | Julia Koblitz, Joaquim Sardà, Lorenz Christian Reimer, Boyke Bunk, Jörg Overmann | Automatically annotated for the DiASPora project (Digital Approaches for the Synthesis of Poorly Accessible Biodiversity Information) | https://diaspora-project.de/progress.html#genomes | |
| 93224 | Reimer, L.C., Lissin, A.,Schober, I., Witte,J.F., Podstawka, A., Lüken, H., Bunk, B.,Overmann, J. | StrainInfo: A central database for resolving microbial strain identifiers | 10.60712/SI-ID414004.1 | |
| 124043 | Isabel Schober, Julia Koblitz | Data extracted from sequence databases, automatically matched based on designation and taxonomy | ||
| 125438 | Julia Koblitz, Lorenz Christian Reimer, Rüdiger Pukall, Jörg Overmann | Predicting bacterial phenotypic traits through improved machine learning using high-quality, curated datasets | 10.1101/2024.08.12.607695 | |
| 125439 | Philipp Münch, René Mreches, Martin Binder, Hüseyin Anil Gündüz, Xiao-Yin To, Alice McHardy | deepG: Deep Learning for Genome Sequence Data. R package version 0.3.1 | https://github.com/GenomeNet/deepG |