Strain identifier

BacDive ID: 135947

Type strain: Yes

Species: Fuscovulum blasticum

Strain history: CIP <- 1995, NCIMB <- C.S. Dow

NCBI tax ID(s): 1188250 (strain), 1075 (species)

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General

@ref: 35232

BacDive-ID: 135947

DSM-Number: 2131

keywords: genome sequence, 16S sequence, Bacteria, mesophilic, Gram-negative, motile, rod-shaped

description: Fuscovulum blasticum CIP 104374 is a mesophilic, Gram-negative, motile bacterium of the family Paracoccaceae.

NCBI tax id

NCBI tax idMatching level
1188250strain
1075species

strain history

@refhistory
67772Warwick University [Basonym: Rhodopseudomonas blastica (Dow C.,1981)]
35232CIP <- 1995, NCIMB <- C.S. Dow

doi: 10.13145/bacdive135947.20230509.8.1

Name and taxonomic classification

LPSN

  • @ref: 20215
  • description: domain/bacteria
  • keyword: phylum/pseudomonadota
  • domain: Bacteria
  • phylum: Pseudomonadota
  • class: Alphaproteobacteria
  • order: Rhodobacterales
  • family: Paracoccaceae
  • genus: Fuscovulum
  • species: Fuscovulum blasticum
  • full scientific name: Fuscovulum blasticum (Eckersley and Dow 1981) Suresh et al. 2020

  • synonyms

    @refsynonym
    20215Tabrizicola blastica
    20215Rhodobacter blastica
    20215Rhodobacter blasticus
    20215Rhodopseudomonas blastica

@ref: 35232

domain: Bacteria

phylum: Proteobacteria

class: Alphaproteobacteria

order: Rhodobacterales

family: Rhodobacteraceae

genus: Rhodobacter

species: Rhodobacter blasticus

type strain: yes

Morphology

cell morphology

  • @ref: 35232
  • gram stain: negative
  • cell shape: rod-shaped
  • motility: yes

Culture and growth conditions

culture medium

@refnamegrowthcompositionlink
35232MEDIUM 120 - for Rhodobacter blasticusyesDistilled water make up to (1000.000 ml);Agar (15.000 g);Yeast extract (2.500 g);Peptone (2.500 g)
35232CIP Medium 12yeshttps://catalogue-crbip.pasteur.fr/fiche_milieu.xhtml?crbip=12

culture temp

@refgrowthtypetemperaturerange
35232positivegrowth30mesophilic
67772positiveoptimum30mesophilic
35232positivegrowth30-41
35232nogrowth10psychrophilic

Physiology and metabolism

halophily

@refsaltgrowthtested relationconcentration
35232NaClpositivegrowth0-2 %
35232NaClnogrowth4 %
35232NaClnogrowth6 %

metabolite utilization

@refmetaboliteutilization activitykind of utilization testedChebi-ID
68371Potassium 5-ketogluconate-builds acid from
68371Potassium 2-ketogluconate-builds acid from
68371gluconate-builds acid from24265
68371L-arabitol-builds acid from18403
68371D-arabitol-builds acid from18333
68371L-fucose-builds acid from18287
68371D-fucose-builds acid from28847
68371D-tagatose-builds acid from16443
68371D-lyxose-builds acid from62318
68371turanose-builds acid from32528
68371gentiobiose-builds acid from28066
68371xylitol-builds acid from17151
68371glycogen-builds acid from28087
68371starch-builds acid from28017
68371raffinose-builds acid from16634
68371melezitose-builds acid from6731
68371inulin-builds acid from15443
68371trehalose-builds acid from27082
68371sucrose-builds acid from17992
68371melibiose-builds acid from28053
68371lactose-builds acid from17716
68371maltose-builds acid from17306
68371cellobiose-builds acid from17057
68371salicin-builds acid from17814
68371esculin-builds acid from4853
68371arbutin-builds acid from18305
68371amygdalin-builds acid from27613
68371N-acetylglucosamine-builds acid from59640
68371methyl alpha-D-glucopyranoside-builds acid from320061
68371methyl alpha-D-mannoside-builds acid from43943
68371D-sorbitol-builds acid from17924
68371D-mannitol-builds acid from16899
68371myo-inositol-builds acid from17268
68371galactitol-builds acid from16813
68371L-rhamnose-builds acid from62345
68371L-sorbose-builds acid from17266
68371D-mannose-builds acid from16024
68371D-fructose-builds acid from15824
68371D-glucose-builds acid from17634
68371D-galactose-builds acid from12936
68371methyl beta-D-xylopyranoside-builds acid from74863
68371ribitol-builds acid from15963
68371L-xylose-builds acid from65328
68371D-xylose-builds acid from65327
68371D-ribose-builds acid from16988
68371L-arabinose-builds acid from30849
68371D-arabinose-builds acid from17108
68371erythritol-builds acid from17113
68371glycerol-builds acid from17754
35232citrate-carbon source16947
35232esculin-hydrolysis4853
35232nitrate-reduction17632
35232nitrite-reduction16301
35232malonate-assimilation15792

antibiotic resistance

  • @ref: 35232
  • metabolite: 0129 (2,4-Diamino-6,7-di-iso-propylpteridine phosphate)
  • is antibiotic: yes
  • is sensitive: no
  • is resistant: yes

metabolite production

  • @ref: 35232
  • Chebi-ID: 35581
  • metabolite: indole
  • production: no

enzymes

@refvalueactivityec
35232oxidase+
35232alcohol dehydrogenase-1.1.1.1
35232gelatinase-
35232amylase-
35232DNase-
35232catalase+1.11.1.6
35232tween esterase-
35232lysine decarboxylase-4.1.1.18
35232ornithine decarboxylase-4.1.1.17
35232urease-3.5.1.5
68382alkaline phosphatase-3.1.3.1
68382esterase (C 4)-
68382esterase lipase (C 8)-
68382lipase (C 14)-
68382leucine arylamidase-3.4.11.1
68382valine arylamidase-
68382cystine arylamidase-3.4.11.3
68382trypsin-3.4.21.4
68382alpha-chymotrypsin-3.4.21.1
68382acid phosphatase-3.1.3.2
68382naphthol-AS-BI-phosphohydrolase-
68382alpha-galactosidase-3.2.1.22
68382beta-galactosidase-3.2.1.23
68382beta-glucuronidase-3.2.1.31
68382alpha-glucosidase-3.2.1.20
68382beta-glucosidase-3.2.1.21
68382N-acetyl-beta-glucosaminidase-3.2.1.52
68382alpha-mannosidase-3.2.1.24
68382alpha-fucosidase-3.2.1.51

API zym

@refControlAlkaline phosphataseEsteraseEsterase LipaseLipaseLeucine arylamidaseValine arylamidaseCystine arylamidaseTrypsinalpha- ChymotrypsinAcid phosphataseNaphthol-AS-BI-phosphohydrolasealpha- Galactosidasebeta- Galactosidasebeta- Glucuronidasealpha- Glucosidasebeta- GlucosidaseN-acetyl-beta- glucosaminidasealpha- Mannosidasealpha- Fucosidase
35232--------------------

API 50CHac

@refGLYERYDARALARARIBDXYLLXYLADOMDXGALGLUFRUMNESBERHADULINOMANSORMDMMDGNAGAMYARBESCSALCELMALLACMELSACTREINUMLZRAFAMDGLYGXLTGENTURLYXTAGDFUCLFUCDARLLARLGNT2KG5KG
35232-------------------------------------------------

API biotype100

@refGLUFRUGALTREMNESBEMELSACRAFMTEMALLACLTEMbGaMaGaCELGENMbGuESCRIBARAXYLPLERHAFUCMLZDARLLARLXLTDULTAGGLYINOMANMTLTURSORADOHBGLYXERYMDG3MDGSATMUCLTATDTATMTATDMLTLMLTCATETATETTECITGRTGAT2KG5KGTRYNAGGNTPACPATpOBEQATGTEmOBEBATPPATCMTTGEBETPCEABTHINLATCAPCYTHISSUCFUMGREGYTAVTETNTTNGLNITA3OBUAPTGTTPRODALALALASERMNTPROPTYR2KT
35232---------------------------------------------------------------------------------------------------

Isolation, sampling and environmental information

isolation

@refgeographic locationcountryorigin.countrycontinentsample type
35232Warwick Univ.United KingdomGBREurope
67772West Midlands, WarwickUnited KingdomGBREuropeEutrophic freshwater pond
35232WarwickUnited KingdomGBREuropeEnvironment, Small eutrophic freshwater pond

taxonmaps

  • @ref: 69479
  • File name: preview.99_22209.png
  • url: https://microbeatlas.org/index.html?action=taxon&taxon_id=90_19;96_3953;97_8403;98_16751;99_22209&stattab=map
  • Last taxonomy: Rhodobacter blasticus subclade
  • 16S sequence: DQ342322
  • Sequence Identity:
  • Total samples: 598
  • soil counts: 60
  • aquatic counts: 448
  • animal counts: 43
  • plant counts: 47

Safety information

risk assessment

@refbiosafety levelbiosafety level comment
677721
352321Risk group (French classification)

Sequence information

16S sequences

  • @ref: 67772
  • description: Rhodobacter blasticus strain ATCC 33485 16S ribosomal RNA gene, partial sequence
  • accession: DQ342322
  • length: 1389
  • database: ena
  • NCBI tax ID: 1188250

Genome sequences

@refdescriptionaccessionassembly leveldatabaseNCBI tax ID
66792Fuscovulum blasticum DSM 2131GCA_003034965contigncbi1188250
66792Rhodobacter blasticus DSM 21311188250.3wgspatric1188250
66792Rhodobacter blasticus DSM 21312898807436draftimg1188250
67772Fuscovulum blasticum 28/5GCA_003071405completencbi1075

Genome-based predictions

predictions

traitpredictionconfidencetraining_data
motileyes54.648no
gram-positiveno99.054no
anaerobicno93.452no
aerobicyes55.79no
halophileno90.439no
spore-formingno96.19no
flagellatedno81.494no
glucose-utilyes80.615no
glucose-fermentno87.533no
thermophileno95.838yes

External links

@ref: 35232

culture collection no.: CIP 104374, ATCC 33485, DSM 2131, LMG 4305, NCIMB 11576, UCCCB1, DSM 26431, IFO 16437, NBRC 16437

straininfo link

  • @ref: 93208
  • straininfo: 4905

literature

topicPubmed-IDtitleauthorsjournalDOIyearmeshtopic2
Phylogeny16738114Rubellimicrobium thermophilum gen. nov., sp. nov., a red-pigmented, moderately thermophilic bacterium isolated from coloured slime deposits in paper machines.Denner EBM, Kolari M, Hoornstra D, Tsitko I, Kampfer P, Busse HJ, Salkinoja-Salonen MInt J Syst Evol Microbiol10.1099/ijs.0.63751-02006DNA, Bacterial/genetics/isolation & purification, Fatty Acids/analysis, Industry, Microscopy, Electron, Molecular Sequence Data, Myxococcales/*classification/genetics/growth & development/isolation & purification, Paper, Phylogeny, Rhodobacteraceae/*classification/genetics/isolation & purification/ultrastructureEnzymology
Phylogeny24158532Tabrizicola aquatica gen. nov. sp. nov., a novel alphaproteobacterium isolated from Qurugol Lake nearby Tabriz city, Iran.Tarhriz V, Thiel V, Nematzadeh G, Hejazi MA, Imhoff JF, Hejazi MSAntonie Van Leeuwenhoek10.1007/s10482-013-0042-y2013Aerobiosis, Bacterial Typing Techniques, Base Composition, Chemoautotrophic Growth, Cluster Analysis, DNA, Bacterial/chemistry/genetics, DNA, Ribosomal/chemistry/genetics, Fatty Acids/analysis, Heterotrophic Processes, Hydrogen-Ion Concentration, Iran, Lakes/*microbiology, Molecular Sequence Data, Nucleic Acid Hybridization, Phylogeny, Quinones/analysis, RNA, Ribosomal, 16S/genetics, Rhodobacteraceae/*classification/genetics/*isolation & purification/physiology, Sequence Analysis, DNA, Sodium Chloride/metabolism, TemperatureGenetics
Phylogeny30798491Rhodobacter thermarum sp. nov., a novel phototrophic bacterium isolated from sediment of a hot spring.Khan IU, Habib N, Xiao M, Li MM, Xian WD, Hejazi MS, Tarhriz V, Zhi XY, Li WJAntonie Van Leeuwenhoek10.1007/s10482-018-01219-72019Bacterial Typing Techniques, Base Composition, DNA, Bacterial/genetics, Fatty Acids/chemistry/metabolism, Geologic Sediments/chemistry/*microbiology, Hot Springs/chemistry/*microbiology, Phylogeny, RNA, Ribosomal, 16S/genetics, Rhodobacter/classification/genetics/*isolation & purification/metabolism, Sodium Chloride/analysis/metabolism, TibetMetabolism
Phylogeny33112224Tabrizicola oligotrophica sp. nov. and Rhodobacter tardus sp. nov., two new species of bacteria belonging to the family Rhodobacteraceae.Sheu C, Li ZH, Sheu SY, Yang CC, Chen WMInt J Syst Evol Microbiol10.1099/ijsem.0.0045262020Bacterial Typing Techniques, Base Composition, DNA, Bacterial/genetics, Fatty Acids/chemistry, Fresh Water/*microbiology, Nucleic Acid Hybridization, Phospholipids/chemistry, *Phylogeny, RNA, Ribosomal, 16S/genetics, Rhodobacter/*classification/isolation & purification, Rhodobacteraceae/*classification/isolation & purification, Sequence Analysis, DNA, Taiwan, Ubiquinone/analogs & derivatives/chemistryEnzymology
Phylogeny35380297Neotabrizicola shimadae gen. nov., sp. nov., an aerobic anoxygenic phototrophic bacterium harbouring photosynthetic genes in the family Rhodobacteraceae, isolated from a terrestrial hot spring.Muramatsu S, Hirose S, Iino T, Ohkuma M, Hanada S, Haruta SAntonie Van Leeuwenhoek10.1007/s10482-022-01728-62022Bacterial Typing Techniques, Bacteriochlorophylls/genetics, Base Composition, DNA, Bacterial/genetics, Fatty Acids/chemistry, *Hot Springs/microbiology, Photosynthesis, Phylogeny, RNA, Ribosomal, 16S/genetics, *Rhodobacteraceae, Sequence Analysis, DNATranscriptome

Reference

@idauthorstitledoi/urlcataloguejournalpubmed
20215Parte, A.C., Sardà Carbasse, J., Meier-Kolthoff, J.P., Reimer, L.C. and Göker, M.List of Prokaryotic names with Standing in Nomenclature (LPSN) moves to the DSMZ10.1099/ijsem.0.004332
35232Curators of the CIPhttps://catalogue-crbip.pasteur.fr/fiche_catalogue.xhtml?crbip=CIP%20104374Collection of Institut Pasteur (CIP 104374)
66792Julia Koblitz, Joaquim Sardà, Lorenz Christian Reimer, Boyke Bunk, Jörg OvermannAutomatically annotated for the DiASPora project (Digital Approaches for the Synthesis of Poorly Accessible Biodiversity Information)https://diaspora-project.de/progress.html#genomes
66794Antje Chang, Lisa Jeske, Sandra Ulbrich, Julia Hofmann, Julia Koblitz, Ida Schomburg, Meina Neumann-Schaal, Dieter Jahn, Dietmar SchomburgBRENDA, the ELIXIR core data resource in 2021: new developments and updates10.1093/nar/gkaa1025Nucleic Acids Res. 49: D498-D508 202033211880
67772Curators of the UCCCBhttps://ucccb.uc.pt/
68371Automatically annotated from API 50CH acid
68382Automatically annotated from API zym
69479João F Matias Rodrigues, Janko Tackmann,Gregor Rot, Thomas SB Schmidt, Lukas Malfertheiner, Mihai Danaila,Marija Dmitrijeva, Daniela Gaio, Nicolas Näpflin and Christian von Mering. University of Zurich.MicrobeAtlas 1.0 betahttps://microbeatlas.org/
93208Reimer, L.C., Lissin, A.,Schober, I., Witte,J.F., Podstawka, A., Lüken, H., Bunk, B.,Overmann, J.StrainInfo: A central database for resolving microbial strain identifiers10.60712/SI-ID4905.1