Strain identifier
BacDive ID: 135945
Type strain:
Species: Latilactobacillus sakei
Strain Designation: 156
Strain history: CIP <- 2015, S. Chaillou, INRA, Jouy en Josas, France: strain 156
NCBI tax ID(s): 1599 (species)
version 8.1 (current version)
General
@ref: 35227
BacDive-ID: 135945
keywords: genome sequence, Bacteria, mesophilic
description: Latilactobacillus sakei 156 is a mesophilic bacterium of the family Lactobacillaceae.
NCBI tax id
- NCBI tax id: 1599
- Matching level: species
strain history
@ref | history |
---|---|
35227 | 2015, S. Chaillou, INRA, Jouy en Josas, France: strain 156 |
35227 | CIP <- 2015, S. Chaillou, INRA, Jouy en Josas, France: strain 156 |
doi: 10.13145/bacdive135945.20230509.8.1
Name and taxonomic classification
LPSN
- @ref: 20215
- description: domain/bacteria
- keyword: phylum/bacillota
- domain: Bacteria
- phylum: Bacillota
- class: Bacilli
- order: Lactobacillales
- family: Lactobacillaceae
- genus: Latilactobacillus
- species: Latilactobacillus sakei
- full scientific name: Latilactobacillus sakei (Katagiri et al. 1934) Zheng et al. 2020
synonyms
@ref synonym 20215 Lactobacillus sakei 20215 Lactobacillus bavaricus 20215 Lactobacillus sake
@ref: 35227
domain: Bacteria
phylum: Firmicutes
class: Bacilli
order: Lactobacillales
family: Lactobacillaceae
genus: Lactobacillus
species: Lactobacillus sakei
strain designation: 156
type strain: no
Morphology
cell morphology
@ref | motility | confidence | gram stain | cell shape |
---|---|---|---|---|
69480 | no | 93.117 | ||
69480 | 100 | positive | ||
35227 | no | positive | rod-shaped |
Culture and growth conditions
culture medium
@ref | name | growth | composition | link |
---|---|---|---|---|
35227 | MEDIUM 40- for Lactobacillus and Leuconostoc | yes | Distilled water make up to (1000.000 ml);Man Rogosa Sharp agar (68.000 g) | |
35227 | CIP Medium 40 | yes | https://catalogue-crbip.pasteur.fr/fiche_milieu.xhtml?crbip=40 |
culture temp
- @ref: 35227
- growth: positive
- type: growth
- temperature: 30
- range: mesophilic
Physiology and metabolism
spore formation
@ref | spore formation | confidence |
---|---|---|
69481 | no | 100 |
69480 | no | 99.993 |
Isolation, sampling and environmental information
isolation
@ref | geographic location | country | origin.country | continent | sample type | isolation date |
---|---|---|---|---|---|---|
35227 | Jouy en Josas | France | FRA | Europe | ||
35227 | Jouy en Josas | France | FRA | Europe | Food, Meat material | 2015-10-05 |
Safety information
risk assessment
- @ref: 35227
- biosafety level: 1
- biosafety level comment: Risk group (French classification)
Sequence information
Genome sequences
- @ref: 66792
- description: Lactobacillus sakei strain J156
- accession: 1599.105
- assembly level: wgs
- database: patric
- NCBI tax ID: 1599
Genome-based predictions
predictions
trait | prediction | confidence | training_data |
---|---|---|---|
spore-forming | no | 100 | no |
motile | no | 95.618 | no |
gram-positive | yes | 97.033 | no |
anaerobic | no | 92.783 | no |
aerobic | no | 96.709 | no |
halophile | yes | 93.988 | no |
spore-forming | no | 94.207 | no |
thermophile | no | 99.58 | yes |
glucose-util | yes | 90.755 | no |
flagellated | no | 98.783 | no |
glucose-ferment | yes | 83 | no |
External links
@ref: 35227
culture collection no.: CIP 110931
Reference
@id | authors | title | doi/url | catalogue |
---|---|---|---|---|
20215 | Parte, A.C., Sardà Carbasse, J., Meier-Kolthoff, J.P., Reimer, L.C. and Göker, M. | List of Prokaryotic names with Standing in Nomenclature (LPSN) moves to the DSMZ | 10.1099/ijsem.0.004332 | |
35227 | Curators of the CIP | https://catalogue-crbip.pasteur.fr/fiche_catalogue.xhtml?crbip=CIP%20110931 | Collection of Institut Pasteur (CIP 110931) | |
66792 | Julia Koblitz, Joaquim Sardà, Lorenz Christian Reimer, Boyke Bunk, Jörg Overmann | Automatically annotated for the DiASPora project (Digital Approaches for the Synthesis of Poorly Accessible Biodiversity Information) | https://diaspora-project.de/progress.html#genomes | |
69480 | Julia Koblitz, Joaquim Sardà, Lorenz Christian Reimer, Boyke Bunk, Jörg Overmann | Predictions based on genome sequence made in the Diaspora project (Digital Approaches for the Synthesis of Poorly Accessible Biodiversity Information) | https://diaspora-project.de/progress.html#genomes | |
69481 | Xiao-Yin To, René Mreches, Martin Binder, Alice C. McHardy, Philipp C. Münch | Predictions based on the model GenomeNet Sporulation v. 1 | 10.21203/rs.3.rs-2527258/v1 |