Strain identifier

BacDive ID: 135934

Type strain: No

Species: Campylobacter pylori

Strain Designation: 26695

Strain history: CIP <- 2000, D. Berg - Washington Univ., St Louis, MO, USA: strain 26695

NCBI tax ID(s): 210 (species)

« back to strain detail view
For citation purpose refer to the digital object identifier (doi) of the current version.
Archive
version 8.1 (current version):
version 8:
version 7.1:
version 7:
version 6:
version 5:
version 4.1:
version 4:
version 3:
version 2.1:
version 8.1 (current version)

General

@ref: 35213

BacDive-ID: 135934

keywords: genome sequence, 16S sequence, Bacteria, mesophilic, Gram-negative, motile, rod-shaped

description: Campylobacter pylori 26695 is a mesophilic, Gram-negative, motile bacterium of the family Campylobacteraceae.

NCBI tax id

  • NCBI tax id: 210
  • Matching level: species

strain history

@refhistory
67770CIP 106780 <-- D. Berg 26695.
35213CIP <- 2000, D. Berg - Washington Univ., St Louis, MO, USA: strain 26695

doi: 10.13145/bacdive135934.20230509.8.1

Name and taxonomic classification

LPSN

  • @ref: 20215
  • description: domain/bacteria
  • keyword: phylum/pseudomonadota
  • domain: Bacteria
  • phylum: Pseudomonadota
  • class: Epsilonproteobacteria
  • order: Campylobacterales
  • family: Campylobacteraceae
  • genus: Campylobacter
  • species: Campylobacter pylori
  • full scientific name: Campylobacter pylori corrig. Marshall et al. 1985

  • synonyms

    @refsynonym
    20215Campylobacter pyloridis
    20215Helicobacter pylori
    20215Helicobacter nemestrinae

@ref: 35213

domain: Bacteria

phylum: Proteobacteria

class: Epsilonproteobacteria

order: Campylobacterales

family: Helicobacteraceae

genus: Helicobacter

species: Helicobacter pylori

strain designation: 26695

type strain: no

Morphology

cell morphology

  • @ref: 35213
  • gram stain: negative
  • cell shape: rod-shaped
  • motility: yes

colony morphology

  • @ref: 35213

Culture and growth conditions

culture medium

@refnamegrowthcompositionlink
35213MEDIUM 45 - for Columbia agar with sheep bloodyesDistilled water make up to (1000.000 ml);Columbia agar (39.000 g);Sheepblood (100.000 ml)
35213Brucella brothno
35213CIP Medium 45yeshttps://catalogue-crbip.pasteur.fr/fiche_milieu.xhtml?crbip=45

culture temp

@refgrowthtypetemperaturerange
35213positivegrowth37mesophilic
67770positivegrowth37mesophilic

Physiology and metabolism

halophily

  • @ref: 35213
  • salt: NaCl
  • growth: no
  • tested relation: growth
  • concentration: 3.5 %

metabolite utilization

@refChebi-IDmetaboliteutilization activitykind of utilization tested
35213606565hippurate-hydrolysis
3521317632nitrate-reduction
3521316301nitrite-reduction

metabolite production

  • @ref: 35213
  • Chebi-ID: 35581
  • metabolite: indole
  • production: no

enzymes

@refvalueactivityec
35213oxidase+
35213gelatinase-
35213catalase+1.11.1.6
35213gamma-glutamyltransferase+2.3.2.2
35213urease+3.5.1.5
68382alkaline phosphatase+3.1.3.1
68382esterase (C 4)+
68382esterase lipase (C 8)+
68382lipase (C 14)-
68382leucine arylamidase+3.4.11.1
68382valine arylamidase-
68382cystine arylamidase-3.4.11.3
68382trypsin-3.4.21.4
68382alpha-chymotrypsin-3.4.21.1
68382acid phosphatase+3.1.3.2
68382naphthol-AS-BI-phosphohydrolase+
68382alpha-galactosidase-3.2.1.22
68382beta-galactosidase-3.2.1.23
68382beta-glucuronidase-3.2.1.31
68382alpha-glucosidase-3.2.1.20
68382beta-glucosidase-3.2.1.21
68382N-acetyl-beta-glucosaminidase-3.2.1.52
68382alpha-mannosidase-3.2.1.24
68382alpha-fucosidase-3.2.1.51

API zym

@refControlAlkaline phosphataseEsteraseEsterase LipaseLipaseLeucine arylamidaseValine arylamidaseCystine arylamidaseTrypsinalpha- ChymotrypsinAcid phosphataseNaphthol-AS-BI-phosphohydrolasealpha- Galactosidasebeta- Galactosidasebeta- Glucuronidasealpha- Glucosidasebeta- GlucosidaseN-acetyl-beta- glucosaminidasealpha- Mannosidasealpha- Fucosidase
35213-+++-+----++--------

Isolation, sampling and environmental information

isolation

@refcountryorigin.countrycontinentsample typeisolation date
35213United KingdomGBREurope
67770Patient in the United Kingdom with gastritis
35213United States of AmericaUSANorth AmericaHuman, Gastritis1989

taxonmaps

  • @ref: 69479
  • File name: preview.99_91.png
  • url: https://microbeatlas.org/index.html?action=taxon&taxon_id=90_36;96_72;97_75;98_82;99_91&stattab=map
  • Last taxonomy: Helicobacter pylori subclade
  • 16S sequence: LC507450
  • Sequence Identity:
  • Total samples: 18084
  • soil counts: 670
  • aquatic counts: 829
  • animal counts: 16307
  • plant counts: 278

Safety information

risk assessment

  • @ref: 35213
  • biosafety level: 2
  • biosafety level comment: Risk group (French classification)

Sequence information

16S sequences

  • @ref: 67770
  • description: Helicobacter pylori JCM 12097 gene for 16S ribosomal RNA, partial sequence
  • accession: LC507450
  • length: 1426
  • database: ena
  • NCBI tax ID: 210

Genome sequences

  • @ref: 67770
  • description: Helicobacter pylori 26695
  • accession: GCA_000008525
  • assembly level: complete
  • database: ncbi
  • NCBI tax ID: 85962

External links

@ref: 35213

culture collection no.: CIP 106780, JCM 12097

straininfo link

  • @ref: 93198
  • straininfo: 68848

Reference

@idauthorstitledoi/urlcatalogue
20215Parte, A.C., Sardà Carbasse, J., Meier-Kolthoff, J.P., Reimer, L.C. and Göker, M.List of Prokaryotic names with Standing in Nomenclature (LPSN) moves to the DSMZ10.1099/ijsem.0.004332
35213Curators of the CIPhttps://catalogue-crbip.pasteur.fr/fiche_catalogue.xhtml?crbip=CIP%20106780Collection of Institut Pasteur (CIP 106780)
67770Curators of the JCMhttps://jcm.brc.riken.jp/en/
68382Automatically annotated from API zym
69479João F Matias Rodrigues, Janko Tackmann,Gregor Rot, Thomas SB Schmidt, Lukas Malfertheiner, Mihai Danaila,Marija Dmitrijeva, Daniela Gaio, Nicolas Näpflin and Christian von Mering. University of Zurich.MicrobeAtlas 1.0 betahttps://microbeatlas.org/
93198Reimer, L.C., Lissin, A.,Schober, I., Witte,J.F., Podstawka, A., Lüken, H., Bunk, B.,Overmann, J.StrainInfo: A central database for resolving microbial strain identifiers10.60712/SI-ID68848.1