Strain identifier

BacDive ID: 135894

Type strain: No

Species: Abiotrophia defectiva

Strain Designation: D5

Strain history: CIP <- 1993, A. Bouvet, Hôtel-Dieu Hosp., Paris, France: strain D5

NCBI tax ID(s): 46125 (species)

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General

@ref: 35155

BacDive-ID: 135894

keywords: Bacteria, facultative anaerobe, mesophilic, Gram-positive, coccus-shaped

description: Abiotrophia defectiva D5 is a facultative anaerobe, mesophilic, Gram-positive bacterium of the family Aerococcaceae.

NCBI tax id

  • NCBI tax id: 46125
  • Matching level: species

strain history

  • @ref: 35155
  • history: CIP <- 1993, A. Bouvet, Hôtel-Dieu Hosp., Paris, France: strain D5

doi: 10.13145/bacdive135894.20241212.9.2

Name and taxonomic classification

LPSN

  • @ref: 20215
  • description: domain/bacteria
  • keyword: phylum/bacillota
  • domain: Bacteria
  • phylum: Bacillota
  • class: Bacilli
  • order: Lactobacillales
  • family: Aerococcaceae
  • genus: Abiotrophia
  • species: Abiotrophia defectiva
  • full scientific name: Abiotrophia defectiva (Bouvet et al. 1989) Kawamura et al. 1995

  • synonyms

    • @ref: 20215
    • synonym: Streptococcus defectivus

@ref: 35155

domain: Bacteria

phylum: Firmicutes

class: Bacilli

order: Lactobacillales

family: Aerococcaceae

genus: Abiotrophia

species: Abiotrophia defectiva

strain designation: D5

type strain: no

Morphology

cell morphology

  • @ref: 35155
  • gram stain: positive
  • cell shape: coccus-shaped

colony morphology

  • @ref: 35155

Culture and growth conditions

culture medium

@refnamegrowthcompositionlink
35155MEDIUM 85 - for AbiotrophiayesDistilled water make up to (800.000 ml);Columbia agar (39.000 g);Horse blood (100.000 ml);Vitamin B6 solution - M0288 (100.000 ml)
35155CIP Medium 85yeshttps://catalogue-crbip.pasteur.fr/fiche_milieu.xhtml?crbip=85

culture temp

@refgrowthtypetemperature
35155positivegrowth37
35155positivegrowth25-37
35155nogrowth10
35155nogrowth45

Physiology and metabolism

oxygen tolerance

  • @ref: 35155
  • oxygen tolerance: facultative anaerobe

metabolite utilization

@refChebi-IDmetaboliteutilization activitykind of utilization tested
3515517632nitrate-reduction
3515516301nitrite-reduction
68371Potassium 5-ketogluconate+builds acid from
6837118305arbutin-builds acid from
6837127613amygdalin-builds acid from
68371320061methyl alpha-D-glucopyranoside-builds acid from
6837117634D-glucose-builds acid from
6837112936D-galactose-builds acid from
68371Potassium 2-ketogluconate-builds acid from
6837124265gluconate-builds acid from
6837118403L-arabitol-builds acid from
6837118333D-arabitol-builds acid from
6837118287L-fucose-builds acid from
6837128847D-fucose-builds acid from
6837116443D-tagatose-builds acid from
6837162318D-lyxose-builds acid from
6837132528turanose-builds acid from
6837128066gentiobiose-builds acid from
6837117151xylitol-builds acid from
6837128087glycogen-builds acid from
6837128017starch-builds acid from
6837116634raffinose-builds acid from
683716731melezitose-builds acid from
6837115443inulin-builds acid from
6837127082trehalose-builds acid from
6837117992sucrose-builds acid from
6837128053melibiose-builds acid from
6837117716lactose-builds acid from
6837117306maltose-builds acid from
6837117057cellobiose-builds acid from
6837117814salicin-builds acid from
683714853esculin-builds acid from
6837159640N-acetylglucosamine-builds acid from
6837143943methyl alpha-D-mannoside-builds acid from
6837117924D-sorbitol-builds acid from
6837116899D-mannitol-builds acid from
6837117268myo-inositol-builds acid from
6837116813galactitol-builds acid from
6837162345L-rhamnose-builds acid from
6837117266L-sorbose-builds acid from
6837116024D-mannose-builds acid from
6837115824D-fructose-builds acid from
6837174863methyl beta-D-xylopyranoside-builds acid from
6837115963ribitol-builds acid from
6837165328L-xylose-builds acid from
6837165327D-xylose-builds acid from
6837116988D-ribose-builds acid from
6837130849L-arabinose-builds acid from
6837117108D-arabinose-builds acid from
6837117113erythritol-builds acid from
6837117754glycerol-builds acid from

enzymes

@refvalueactivityec
35155oxidase-
35155beta-galactosidase-3.2.1.23
35155alcohol dehydrogenase-1.1.1.1
35155catalase-1.11.1.6
35155lysine decarboxylase+4.1.1.18
35155ornithine decarboxylase-4.1.1.17

API 50CHac

@refGLYERYDARALARARIBDXYLLXYLADOMDXGALGLUFRUMNESBERHADULINOMANSORMDMMDGNAGAMYARBESCSALCELMALLACMELSACTREINUMLZRAFAMDGLYGXLTGENTURLYXTAGDFUCLFUCDARLLARLGNT2KG5KG
35155------------------------------------------------+

Safety information

risk assessment

  • @ref: 35155
  • biosafety level: 1
  • biosafety level comment: Risk group (French classification)

External links

@ref: 35155

culture collection no.: CIP 103894

straininfo link

  • @ref: 93166
  • straininfo: 67004

Reference

@idauthorstitledoi/urlcatalogue
20215Parte, A.C., Sardà Carbasse, J., Meier-Kolthoff, J.P., Reimer, L.C. and Göker, M.List of Prokaryotic names with Standing in Nomenclature (LPSN) moves to the DSMZ10.1099/ijsem.0.004332
35155Curators of the CIPhttps://catalogue-crbip.pasteur.fr/fiche_catalogue.xhtml?crbip=CIP%20103894Collection of Institut Pasteur (CIP 103894)
68371Automatically annotated from API 50CH acid
93166Reimer, L.C., Lissin, A.,Schober, I., Witte,J.F., Podstawka, A., Lüken, H., Bunk, B.,Overmann, J.StrainInfo: A central database for resolving microbial strain identifiers10.60712/SI-ID67004.1