Strain identifier

BacDive ID: 135892

Type strain: No

Species: Abiotrophia defectiva

Strain Designation: C4

Strain history: CIP <- 1993, A. Bouvet, Hôtel-Dieu Hosp., Paris, France: strain C4

NCBI tax ID(s): 46125 (species)

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General

@ref: 35153

BacDive-ID: 135892

keywords: Bacteria, facultative anaerobe, mesophilic, Gram-positive, coccus-shaped

description: Abiotrophia defectiva C4 is a facultative anaerobe, mesophilic, Gram-positive bacterium of the family Aerococcaceae.

NCBI tax id

  • NCBI tax id: 46125
  • Matching level: species

strain history

  • @ref: 35153
  • history: CIP <- 1993, A. Bouvet, Hôtel-Dieu Hosp., Paris, France: strain C4

doi: 10.13145/bacdive135892.20241212.9.2

Name and taxonomic classification

LPSN

  • @ref: 20215
  • description: domain/bacteria
  • keyword: phylum/bacillota
  • domain: Bacteria
  • phylum: Bacillota
  • class: Bacilli
  • order: Lactobacillales
  • family: Aerococcaceae
  • genus: Abiotrophia
  • species: Abiotrophia defectiva
  • full scientific name: Abiotrophia defectiva (Bouvet et al. 1989) Kawamura et al. 1995

  • synonyms

    • @ref: 20215
    • synonym: Streptococcus defectivus

@ref: 35153

domain: Bacteria

phylum: Firmicutes

class: Bacilli

order: Lactobacillales

family: Aerococcaceae

genus: Abiotrophia

species: Abiotrophia defectiva

strain designation: C4

type strain: no

Morphology

cell morphology

  • @ref: 35153
  • gram stain: positive
  • cell shape: coccus-shaped

colony morphology

  • @ref: 35153

Culture and growth conditions

culture medium

@refnamegrowthcompositionlink
35153MEDIUM 85 - for AbiotrophiayesDistilled water make up to (800.000 ml);Columbia agar (39.000 g);Horse blood (100.000 ml);Vitamin B6 solution - M0288 (100.000 ml)
35153CIP Medium 85yeshttps://catalogue-crbip.pasteur.fr/fiche_milieu.xhtml?crbip=85

culture temp

@refgrowthtypetemperature
35153positivegrowth37
35153positivegrowth30-37
35153nogrowth10
35153nogrowth45

Physiology and metabolism

oxygen tolerance

  • @ref: 35153
  • oxygen tolerance: facultative anaerobe

halophily

  • @ref: 35153
  • salt: NaCl
  • growth: no
  • tested relation: growth
  • concentration: 6.5 %

metabolite utilization

@refChebi-IDmetaboliteutilization activitykind of utilization tested
3515317632nitrate+reduction
3515316301nitrite-reduction
68371Potassium 5-ketogluconate-builds acid from
68371320061methyl alpha-D-glucopyranoside-builds acid from
6837117754glycerol+builds acid from
68371Potassium 2-ketogluconate-builds acid from
6837124265gluconate-builds acid from
6837118403L-arabitol-builds acid from
6837118333D-arabitol-builds acid from
6837118287L-fucose-builds acid from
6837128847D-fucose-builds acid from
6837116443D-tagatose-builds acid from
6837162318D-lyxose-builds acid from
6837132528turanose+builds acid from
6837128066gentiobiose-builds acid from
6837117151xylitol-builds acid from
6837128087glycogen+builds acid from
6837128017starch+builds acid from
6837116634raffinose-builds acid from
683716731melezitose-builds acid from
6837115443inulin-builds acid from
6837127082trehalose+builds acid from
6837128053melibiose-builds acid from
6837117716lactose-builds acid from
6837117306maltose+builds acid from
6837117057cellobiose-builds acid from
6837117814salicin-builds acid from
683714853esculin-builds acid from
6837118305arbutin-builds acid from
6837127613amygdalin-builds acid from
6837159640N-acetylglucosamine+builds acid from
6837143943methyl alpha-D-mannoside-builds acid from
6837117924D-sorbitol-builds acid from
6837116899D-mannitol-builds acid from
6837117268myo-inositol-builds acid from
6837116813galactitol-builds acid from
6837162345L-rhamnose-builds acid from
6837117266L-sorbose-builds acid from
6837116024D-mannose+builds acid from
6837115824D-fructose+builds acid from
6837117634D-glucose+builds acid from
6837112936D-galactose+builds acid from
6837174863methyl beta-D-xylopyranoside-builds acid from
6837115963ribitol-builds acid from
6837165328L-xylose-builds acid from
6837165327D-xylose-builds acid from
6837130849L-arabinose-builds acid from
6837117108D-arabinose-builds acid from
6837117113erythritol-builds acid from

antibiotic resistance

  • @ref: 35153
  • metabolite: 0129 (2,4-Diamino-6,7-di-iso-propylpteridine phosphate)
  • is antibiotic: yes
  • is sensitive: no
  • is resistant: yes

enzymes

@refvalueactivityec
35153oxidase-
35153beta-galactosidase+3.2.1.23
35153alcohol dehydrogenase-1.1.1.1
35153catalase-1.11.1.6
35153lysine decarboxylase-4.1.1.18
35153ornithine decarboxylase-4.1.1.17

API 50CHac

@refGLYERYDARALARARIBDXYLLXYLADOMDXGALGLUFRUMNESBERHADULINOMANSORMDMMDGNAGAMYARBESCSALCELMALLACMELSACTREINUMLZRAFAMDGLYGXLTGENTURLYXTAGDFUCLFUCDARLLARLGNT2KG5KG
35153+---+/-----++++--------+-----+--+/-+---++--+---------

Safety information

risk assessment

  • @ref: 35153
  • biosafety level: 1
  • biosafety level comment: Risk group (French classification)

External links

@ref: 35153

culture collection no.: CIP 103892

straininfo link

  • @ref: 93164
  • straininfo: 67003

Reference

@idauthorstitledoi/urlcatalogue
20215Parte, A.C., Sardà Carbasse, J., Meier-Kolthoff, J.P., Reimer, L.C. and Göker, M.List of Prokaryotic names with Standing in Nomenclature (LPSN) moves to the DSMZ10.1099/ijsem.0.004332
35153Curators of the CIPhttps://catalogue-crbip.pasteur.fr/fiche_catalogue.xhtml?crbip=CIP%20103892Collection of Institut Pasteur (CIP 103892)
68371Automatically annotated from API 50CH acid
93164Reimer, L.C., Lissin, A.,Schober, I., Witte,J.F., Podstawka, A., Lüken, H., Bunk, B.,Overmann, J.StrainInfo: A central database for resolving microbial strain identifiers10.60712/SI-ID67003.1