Strain identifier
BacDive ID: 135892
Type strain:
Species: Abiotrophia defectiva
Strain Designation: C4
Strain history: CIP <- 1993, A. Bouvet, Hôtel-Dieu Hosp., Paris, France: strain C4
NCBI tax ID(s): 46125 (species)
version 8.1 (current version)
General
@ref: 35153
BacDive-ID: 135892
keywords: Bacteria, facultative anaerobe, mesophilic, Gram-positive, coccus-shaped
description: Abiotrophia defectiva C4 is a facultative anaerobe, mesophilic, Gram-positive bacterium of the family Aerococcaceae.
NCBI tax id
- NCBI tax id: 46125
- Matching level: species
strain history
- @ref: 35153
- history: CIP <- 1993, A. Bouvet, Hôtel-Dieu Hosp., Paris, France: strain C4
doi: 10.13145/bacdive135892.20230509.8.1
Name and taxonomic classification
LPSN
- @ref: 20215
- description: domain/bacteria
- keyword: phylum/bacillota
- domain: Bacteria
- phylum: Bacillota
- class: Bacilli
- order: Lactobacillales
- family: Aerococcaceae
- genus: Abiotrophia
- species: Abiotrophia defectiva
- full scientific name: Abiotrophia defectiva (Bouvet et al. 1989) Kawamura et al. 1995
synonyms
- @ref: 20215
- synonym: Streptococcus defectivus
@ref: 35153
domain: Bacteria
phylum: Firmicutes
class: Bacilli
order: Lactobacillales
family: Aerococcaceae
genus: Abiotrophia
species: Abiotrophia defectiva
strain designation: C4
type strain: no
Morphology
cell morphology
- @ref: 35153
- gram stain: positive
- cell shape: coccus-shaped
colony morphology
- @ref: 35153
Culture and growth conditions
culture medium
@ref | name | growth | composition | link |
---|---|---|---|---|
35153 | MEDIUM 85 - for Abiotrophia | yes | Distilled water make up to (800.000 ml);Columbia agar (39.000 g);Horse blood (100.000 ml);Vitamin B6 solution - M0288 (100.000 ml) | |
35153 | CIP Medium 85 | yes | https://catalogue-crbip.pasteur.fr/fiche_milieu.xhtml?crbip=85 |
culture temp
@ref | growth | type | temperature | range |
---|---|---|---|---|
35153 | positive | growth | 37 | mesophilic |
35153 | positive | growth | 30-37 | mesophilic |
35153 | no | growth | 10 | psychrophilic |
35153 | no | growth | 45 | thermophilic |
Physiology and metabolism
oxygen tolerance
- @ref: 35153
- oxygen tolerance: facultative anaerobe
halophily
- @ref: 35153
- salt: NaCl
- growth: no
- tested relation: growth
- concentration: 6.5 %
metabolite utilization
@ref | metabolite | utilization activity | kind of utilization tested | Chebi-ID |
---|---|---|---|---|
68371 | Potassium 5-ketogluconate | - | builds acid from | |
68371 | Potassium 2-ketogluconate | - | builds acid from | |
68371 | gluconate | - | builds acid from | 24265 |
68371 | L-arabitol | - | builds acid from | 18403 |
68371 | D-arabitol | - | builds acid from | 18333 |
68371 | L-fucose | - | builds acid from | 18287 |
68371 | D-fucose | - | builds acid from | 28847 |
68371 | D-tagatose | - | builds acid from | 16443 |
68371 | D-lyxose | - | builds acid from | 62318 |
68371 | turanose | + | builds acid from | 32528 |
68371 | gentiobiose | - | builds acid from | 28066 |
68371 | xylitol | - | builds acid from | 17151 |
68371 | glycogen | + | builds acid from | 28087 |
68371 | starch | + | builds acid from | 28017 |
68371 | raffinose | - | builds acid from | 16634 |
68371 | melezitose | - | builds acid from | 6731 |
68371 | inulin | - | builds acid from | 15443 |
68371 | trehalose | + | builds acid from | 27082 |
68371 | melibiose | - | builds acid from | 28053 |
68371 | lactose | - | builds acid from | 17716 |
68371 | maltose | + | builds acid from | 17306 |
68371 | cellobiose | - | builds acid from | 17057 |
68371 | salicin | - | builds acid from | 17814 |
68371 | esculin | - | builds acid from | 4853 |
68371 | arbutin | - | builds acid from | 18305 |
68371 | amygdalin | - | builds acid from | 27613 |
68371 | N-acetylglucosamine | + | builds acid from | 59640 |
68371 | methyl alpha-D-glucopyranoside | - | builds acid from | 320061 |
68371 | methyl alpha-D-mannoside | - | builds acid from | 43943 |
68371 | D-sorbitol | - | builds acid from | 17924 |
68371 | D-mannitol | - | builds acid from | 16899 |
68371 | myo-inositol | - | builds acid from | 17268 |
68371 | galactitol | - | builds acid from | 16813 |
68371 | L-rhamnose | - | builds acid from | 62345 |
68371 | L-sorbose | - | builds acid from | 17266 |
68371 | D-mannose | + | builds acid from | 16024 |
68371 | D-fructose | + | builds acid from | 15824 |
68371 | D-glucose | + | builds acid from | 17634 |
68371 | D-galactose | + | builds acid from | 12936 |
68371 | methyl beta-D-xylopyranoside | - | builds acid from | 74863 |
68371 | ribitol | - | builds acid from | 15963 |
68371 | L-xylose | - | builds acid from | 65328 |
68371 | D-xylose | - | builds acid from | 65327 |
68371 | L-arabinose | - | builds acid from | 30849 |
68371 | D-arabinose | - | builds acid from | 17108 |
68371 | erythritol | - | builds acid from | 17113 |
68371 | glycerol | + | builds acid from | 17754 |
35153 | nitrate | + | reduction | 17632 |
35153 | nitrite | - | reduction | 16301 |
antibiotic resistance
- @ref: 35153
- metabolite: 0129 (2,4-Diamino-6,7-di-iso-propylpteridine phosphate)
- is antibiotic: yes
- is sensitive: no
- is resistant: yes
enzymes
@ref | value | activity | ec |
---|---|---|---|
35153 | oxidase | - | |
35153 | beta-galactosidase | + | 3.2.1.23 |
35153 | alcohol dehydrogenase | - | 1.1.1.1 |
35153 | catalase | - | 1.11.1.6 |
35153 | lysine decarboxylase | - | 4.1.1.18 |
35153 | ornithine decarboxylase | - | 4.1.1.17 |
API 50CHac
@ref | GLY | ERY | DARA | LARA | RIB | DXYL | LXYL | ADO | MDX | GAL | GLU | FRU | MNE | SBE | RHA | DUL | INO | MAN | SOR | MDM | MDG | NAG | AMY | ARB | ESC | SAL | CEL | MAL | LAC | MEL | SAC | TRE | INU | MLZ | RAF | AMD | GLYG | XLT | GEN | TUR | LYX | TAG | DFUC | LFUC | DARL | LARL | GNT | 2KG | 5KG |
---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
35153 | + | - | - | - | +/- | - | - | - | - | + | + | + | + | - | - | - | - | - | - | - | - | + | - | - | - | - | - | + | - | - | +/- | + | - | - | - | + | + | - | - | + | - | - | - | - | - | - | - | - | - |
Safety information
risk assessment
- @ref: 35153
- biosafety level: 1
- biosafety level comment: Risk group (French classification)
External links
@ref: 35153
culture collection no.: CIP 103892
straininfo link
- @ref: 93164
- straininfo: 67003
Reference
@id | authors | title | doi/url | catalogue |
---|---|---|---|---|
20215 | Parte, A.C., Sardà Carbasse, J., Meier-Kolthoff, J.P., Reimer, L.C. and Göker, M. | List of Prokaryotic names with Standing in Nomenclature (LPSN) moves to the DSMZ | 10.1099/ijsem.0.004332 | |
35153 | Curators of the CIP | https://catalogue-crbip.pasteur.fr/fiche_catalogue.xhtml?crbip=CIP%20103892 | Collection of Institut Pasteur (CIP 103892) | |
68371 | Automatically annotated from API 50CH acid | |||
93164 | Reimer, L.C., Lissin, A.,Schober, I., Witte,J.F., Podstawka, A., Lüken, H., Bunk, B.,Overmann, J. | StrainInfo: A central database for resolving microbial strain identifiers | 10.60712/SI-ID67003.1 |