Strain identifier
BacDive ID: 135874
Type strain: 
Species: Mycobacterium goodii
Strain Designation: M069
Strain history: <- CIP <- J. F. Flanagan {1986}
NCBI tax ID(s): 134601 (species)
version 9.2 (current version)
General
@ref: 64150
BacDive-ID: 135874
DSM-Number: 44492
keywords: genome sequence, 16S sequence, Bacteria, mesophilic, Gram-positive, human pathogen
description: Mycobacterium goodii M069 is a mesophilic, Gram-positive human pathogen of the family Mycobacteriaceae.
NCBI tax id
- NCBI tax id: 134601
- Matching level: species
strain history
- @ref: 64150
- history: <- CIP <- J. F. Flanagan {1986}
doi: 10.13145/bacdive135874.20241212.9.2
Name and taxonomic classification
LPSN
- @ref: 20215
- description: domain/bacteria
- keyword: phylum/actinomycetota
- domain: Bacteria
- phylum: Actinomycetota
- class: Actinomycetes
- order: Mycobacteriales
- family: Mycobacteriaceae
- genus: Mycobacterium
- species: Mycobacterium goodii
- full scientific name: Mycobacterium goodii Brown et al. 1999
synonyms
- @ref: 20215
- synonym: Mycolicibacterium goodii
@ref: 64150
domain: Bacteria
phylum: Actinobacteria
class: Actinobacteria
order: Actinomycetales
family: Mycobacteriaceae
genus: Mycobacterium
species: Mycobacterium goodii
full scientific name: Mycobacterium goodii Brown et al. 1999
strain designation: M069
type strain: yes
Morphology
cell morphology
- @ref: 69480
- gram stain: positive
- confidence: 90.48
multimedia
- @ref: 64150
- multimedia content: https://www.dsmz.de/microorganisms/photos/DSM_44492.jpg
- caption: Medium 250 37°C
- intellectual property rights: © Leibniz-Institut DSMZ
Culture and growth conditions
culture medium
| @ref | name | growth | link | composition |
|---|---|---|---|---|
| 64150 | PEPTONE MEAT EXTRACT GLYCEROL AGAR (DSMZ Medium 250) | yes | https://mediadive.dsmz.de/medium/250 | Name: PEPTONE MEAT EXTRACT GLYCEROL AGAR (DSMZ Medium 250) Composition: Agar 20.0 g/l Proteose peptone no. 3 5.0 g/l Meat extract 3.0 g/l Glycerol Distilled water |
| 64150 | MIDDLEBROOK MEDIUM (DSMZ Medium 645) | yes | https://mediadive.dsmz.de/medium/645 | Name: MIDDLEBROOK MEDIUM (DSMZ Medium 645) Composition: Bacto Middlebrook 7H10 agar 20.9945 g/l Glycerol Distilled water |
| 35129 | MEDIUM 55 - for Mycobacterium | yes |
culture temp
| @ref | growth | type | temperature |
|---|---|---|---|
| 64150 | positive | growth | 37 |
| 35129 | positive | growth | 30 |
Isolation, sampling and environmental information
isolation
| @ref | geographic location | country | origin.country | continent | sample type |
|---|---|---|---|---|---|
| 35129 | Florida | USA | USA | North America | |
| 64150 | patient with a post-traumatic osteomyelitis of the calcaneus (heel) |
isolation source categories
| Cat1 | Cat2 | Cat3 |
|---|---|---|
| #Host Body-Site | #Other | #Bone |
| #Host Body-Site | #Limb | #Foot |
| #Infection | #Inflammation | |
| #Infection | #Patient |
Safety information
risk assessment
- @ref: 64150
- pathogenicity human: yes
- pathogenicity animal: yes
- biosafety level: 2
- biosafety level comment: Risk group (German classification)
Sequence information
16S sequences
- @ref: 64150
- description: Mycolicibacterium goodii strain ATCC 700504 16S ribosomal RNA gene, partial sequence
- accession: AY457079
- length: 1489
- database: nuccore
- NCBI tax ID: 134601
Genome sequences
| @ref | description | accession | assembly level | database | NCBI tax ID |
|---|---|---|---|---|---|
| 66792 | Mycolicibacterium goodii ATCC 700504 | GCA_022370755 | complete | ncbi | 134601 |
| 66792 | Mycolicibacterium goodii CCUG 58730 | GCA_025822535 | scaffold | ncbi | 134601 |
Genome-based predictions
predictions
| @ref | trait | model | description | prediction | confidence | training_data |
|---|---|---|---|---|---|---|
| 69480 | gram-positive | gram-positive | Positive reaction to Gram-staining | yes | 90.48 | no |
| 69480 | anaerobic | anaerobic | Ability to grow under anoxygenic conditions (including facultative anaerobes) | no | 95.697 | no |
| 69480 | aerobic | aerobic | Ability to grow under oxygenic conditions (including facultative aerobes) | yes | 86.601 | no |
| 69480 | spore-forming | spore-forming | Ability to form endo- or exospores | no | 59.391 | no |
| 69480 | thermophilic | thermophile | Ability to grow at temperatures above or equal to 45°C | no | 95.5 | yes |
| 69480 | flagellated | motile2+ | Ability to perform flagellated movement | no | 86.962 | no |
External links
@ref: 64150
culture collection no.: DSM 44492, ATCC 700504, CCUG 58730, CDC 860673, JCM 12689, CIP 106349
straininfo link
- @ref: 93149
- straininfo: 46964
literature
- topic: Phylogeny
- Pubmed-ID: 10555330
- title: Mycobacterium wolinskyi sp. nov. and Mycobacterium goodii sp. nov., two new rapidly growing species related to Mycobacterium smegmatis and associated with human wound infections: a cooperative study from the International Working Group on Mycobacterial Taxonomy.
- authors: Brown BA, Springer B, Steingrube VA, Wilson RW, Pfyffer GE, Garcia MJ, Menendez MC, Rodriguez-Salgado B, Jost KC Jr, Chiu SH, Onyi GO, Bottger EC, Wallace RJ Jr
- journal: Int J Syst Bacteriol
- DOI: 10.1099/00207713-49-4-1493
- year: 1999
- mesh: Adolescent, Adult, Aged, Aged, 80 and over, *Bacterial Proteins, Bacterial Typing Techniques, Base Composition, Base Sequence, Chaperonin 60, Chaperonins/genetics, Chromatography, High Pressure Liquid, DNA, Bacterial/chemistry/genetics, Female, Genes, rRNA/genetics, Humans, Male, Microbial Sensitivity Tests, Middle Aged, Molecular Sequence Data, Mycobacterium/*classification/genetics/isolation & purification/physiology, Mycobacterium Infections/*microbiology, Mycobacterium smegmatis/classification/genetics/isolation & purification, Nucleic Acid Hybridization, Polymerase Chain Reaction, Polymorphism, Restriction Fragment Length, RNA, Ribosomal, 16S/genetics, Sequence Analysis, DNA, Wound Infection/*microbiology
- topic2: Pathogenicity
Reference
| @id | authors | title | doi/url | catalogue |
|---|---|---|---|---|
| 20215 | Parte, A.C., Sardà Carbasse, J., Meier-Kolthoff, J.P., Reimer, L.C. and Göker, M. | List of Prokaryotic names with Standing in Nomenclature (LPSN) moves to the DSMZ | 10.1099/ijsem.0.004332 | |
| 35129 | Curators of the CIP | https://brclims.pasteur.fr/brcWeb/souche/detail/1/18470 | ||
| 64150 | Curators of the DSMZ | https://www.dsmz.de/collection/catalogue/details/culture/DSM-44492 | Leibniz Institut DSMZ-Deutsche Sammlung von Mikroorganismen und Zellkulturen GmbH (DSM 44492) | |
| 66792 | Julia Koblitz, Joaquim Sardà, Lorenz Christian Reimer, Boyke Bunk, Jörg Overmann | Automatically annotated for the DiASPora project (Digital Approaches for the Synthesis of Poorly Accessible Biodiversity Information) | https://diaspora-project.de/progress.html#genomes | |
| 69480 | Julia Koblitz, Joaquim Sardà, Lorenz Christian Reimer, Boyke Bunk, Jörg Overmann | Predictions based on genome sequence made in the Diaspora project (Digital Approaches for the Synthesis of Poorly Accessible Biodiversity Information) | https://diaspora-project.de/progress.html#genomes | |
| 93149 | Reimer, L.C., Lissin, A.,Schober, I., Witte,J.F., Podstawka, A., Lüken, H., Bunk, B.,Overmann, J. | StrainInfo: A central database for resolving microbial strain identifiers | 10.60712/SI-ID46964.1 |