Strain identifier

BacDive ID: 135812

Type strain: No

Species: Elizabethkingia meningoseptica

Strain Designation: 58-80

Strain history: CIP <- 1980, C. Richard, Inst. Pasteur, Paris, France: strain 58-80 <- K.B. Pechter, Hebrew Univ., Jerusalem, Israel, Flavobacterium meningosepticum

NCBI tax ID(s): 238 (species)

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General

@ref: 35060

BacDive-ID: 135812

keywords: genome sequence, Bacteria, obligate aerobe, mesophilic, Gram-negative, rod-shaped

description: Elizabethkingia meningoseptica 58-80 is an obligate aerobe, mesophilic, Gram-negative bacterium of the family Weeksellaceae.

NCBI tax id

  • NCBI tax id: 238
  • Matching level: species

strain history

  • @ref: 35060
  • history: CIP <- 1980, C. Richard, Inst. Pasteur, Paris, France: strain 58-80 <- K.B. Pechter, Hebrew Univ., Jerusalem, Israel, Flavobacterium meningosepticum

doi: 10.13145/bacdive135812.20230509.8.1

Name and taxonomic classification

LPSN

  • @ref: 20215
  • description: domain/bacteria
  • keyword: phylum/bacteroidota
  • domain: Bacteria
  • phylum: Bacteroidota
  • class: Flavobacteriia
  • order: Flavobacteriales
  • family: Weeksellaceae
  • genus: Elizabethkingia
  • species: Elizabethkingia meningoseptica
  • full scientific name: Elizabethkingia meningoseptica (King 1959) Kim et al. 2005

  • synonyms

    @refsynonym
    20215Flavobacterium meningosepticum
    20215Chryseobacterium meningosepticum

@ref: 35060

domain: Bacteria

phylum: Bacteroidetes

class: Flavobacteriia

order: Flavobacteriales

family: Flavobacteriaceae

genus: Elizabethkingia

species: Elizabethkingia meningoseptica

strain designation: 58-80

type strain: no

Morphology

cell morphology

  • @ref: 35060
  • gram stain: negative
  • cell shape: rod-shaped
  • motility: no

Culture and growth conditions

culture medium

@refnamegrowthcompositionlink
35060MEDIUM 3 - Columbia agaryesColumbia agar (39.000 g);distilled water (1000.000 ml)
35060CIP Medium 72yeshttps://catalogue-crbip.pasteur.fr/fiche_milieu.xhtml?crbip=72
35060CIP Medium 3yeshttps://catalogue-crbip.pasteur.fr/fiche_milieu.xhtml?crbip=3

culture temp

  • @ref: 35060
  • growth: positive
  • type: growth
  • temperature: 30
  • range: mesophilic

Physiology and metabolism

oxygen tolerance

  • @ref: 35060
  • oxygen tolerance: obligate aerobe

metabolite utilization

@refChebi-IDmetaboliteutilization activitykind of utilization tested
3506017632nitrate-reduction
3506016301nitrite+reduction

metabolite production

  • @ref: 35060
  • Chebi-ID: 35581
  • metabolite: indole
  • production: yes

enzymes

@refvalueactivityec
35060oxidase+
35060catalase+1.11.1.6
35060urease-3.5.1.5
68382alkaline phosphatase+3.1.3.1
68382esterase (C 4)-
68382esterase lipase (C 8)+
68382lipase (C 14)-
68382leucine arylamidase+3.4.11.1
68382valine arylamidase+
68382cystine arylamidase+3.4.11.3
68382trypsin+3.4.21.4
68382alpha-chymotrypsin-3.4.21.1
68382acid phosphatase+3.1.3.2
68382naphthol-AS-BI-phosphohydrolase+
68382alpha-galactosidase+3.2.1.22
68382beta-galactosidase-3.2.1.23
68382beta-glucuronidase-3.2.1.31
68382alpha-glucosidase+3.2.1.20
68382beta-glucosidase-3.2.1.21
68382N-acetyl-beta-glucosaminidase+3.2.1.52
68382alpha-mannosidase-3.2.1.24
68382alpha-fucosidase+3.2.1.51

API zym

@refControlAlkaline phosphataseEsteraseEsterase LipaseLipaseLeucine arylamidaseValine arylamidaseCystine arylamidaseTrypsinalpha- ChymotrypsinAcid phosphataseNaphthol-AS-BI-phosphohydrolasealpha- Galactosidasebeta- Galactosidasebeta- Glucuronidasealpha- Glucosidasebeta- GlucosidaseN-acetyl-beta- glucosaminidasealpha- Mannosidasealpha- Fucosidase
35060-+-+-++++-+++--+-+-+

Isolation, sampling and environmental information

isolation

@refcountryorigin.countrycontinentsample typeisolation date
35060IsraelISRAsia
35060IsraelISRAsiaHuman, Tracheal exudate (child)1980

Safety information

risk assessment

  • @ref: 35060
  • biosafety level: 2
  • biosafety level comment: Risk group (French classification)

Sequence information

Genome sequences

  • @ref: 66792
  • description: Elizabethkingia meningoseptica 58-80/CIP80.33
  • accession: 2854750601
  • assembly level: draft
  • database: img
  • NCBI tax ID: 238

External links

@ref: 35060

culture collection no.: CIP 80.33, NCTC 11381

straininfo link

  • @ref: 93098
  • straininfo: 67821

Reference

@idauthorstitledoi/urlcatalogue
20215Parte, A.C., Sardà Carbasse, J., Meier-Kolthoff, J.P., Reimer, L.C. and Göker, M.List of Prokaryotic names with Standing in Nomenclature (LPSN) moves to the DSMZ10.1099/ijsem.0.004332
35060Curators of the CIPhttps://catalogue-crbip.pasteur.fr/fiche_catalogue.xhtml?crbip=CIP%2080.33Collection of Institut Pasteur (CIP 80.33)
66792Julia Koblitz, Joaquim Sardà, Lorenz Christian Reimer, Boyke Bunk, Jörg OvermannAutomatically annotated for the DiASPora project (Digital Approaches for the Synthesis of Poorly Accessible Biodiversity Information)https://diaspora-project.de/progress.html#genomes
68382Automatically annotated from API zym
93098Reimer, L.C., Lissin, A.,Schober, I., Witte,J.F., Podstawka, A., Lüken, H., Bunk, B.,Overmann, J.StrainInfo: A central database for resolving microbial strain identifiers10.60712/SI-ID67821.1