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Strain identifier

BacDive ID: 135777

Type strain: No

Species: Vibrio cholerae

NCBI tax ID(s): 666 (species)

For citation purpose refer to the digital object identifier (doi) of the current version.
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General

@ref: 35021

BacDive-ID: 135777

keywords: genome sequence, Bacteria, aerobe, mesophilic

description: Vibrio cholerae CIP 69.41 is an aerobe, mesophilic bacterium of the family Vibrionaceae.

NCBI tax id

  • NCBI tax id: 666
  • Matching level: species

doi: 10.13145/bacdive135777.20221219.7.1

Name and taxonomic classification

LPSN

  • @ref: 20215
  • description: domain/bacteria
  • keyword: phylum/pseudomonadota
  • domain: Bacteria
  • phylum: Pseudomonadota
  • class: Gammaproteobacteria
  • order: Vibrionales
  • family: Vibrionaceae
  • genus: Vibrio
  • species: Vibrio cholerae
  • full scientific name: Vibrio cholerae Pacini 1854 (Approved Lists 1980)
  • synonyms

    • @ref: 20215
    • synonym: Vibrio albensis

@ref: 35021

domain: Bacteria

phylum: Proteobacteria

class: Gammaproteobacteria

order: Vibrionales

family: Vibrionaceae

genus: Vibrio

species: Vibrio cholerae

type strain: no

Morphology

cell morphology

@refmotilityconfidencegram stain
69480yes84.092
6948099.507negative

Culture and growth conditions

culture medium

  • @ref: 35021
  • name: MEDIUM 3 - Columbia agar
  • growth: yes
  • composition: Columbia agar (39.000 g);distilled water (1000.000 ml)

culture temp

@refgrowthtypetemperaturerange
35021positivegrowth30mesophilic
58282positivegrowth30mesophilic

Physiology and metabolism

oxygen tolerance

  • @ref: 58282
  • oxygen tolerance: aerobe

spore formation

  • @ref: 69480
  • spore formation: no
  • confidence: 97.858

halophily

  • @ref: 69480
  • halophily level: non-halophilic
  • confidence: 89.222

Isolation, sampling and environmental information

isolation

@refgeographic locationcountryorigin.countrycontinentsample type
35021Elbe riverGermanyDEUEurope
58282Elbe riverGermanyDEUEuropeFish

isolation source categories

  • Cat1: #Host
  • Cat2: #Fishes

Sequence information

Genome sequences

@refdescriptionaccessionassembly leveldatabaseNCBI tax ID
66792Vibrio albensis ATCC 14547 ATCC 14547GCA_000518145scaffoldncbi1408477
66792Vibrio albensis ATCC 145471408477.3wgspatric1408477
66792Vibrio albensis strain ATCC 14547140100.3wgspatric666
66792Vibrio albensis ATCC 145472545555863draftimg1408477
66792Vibrio albensis ATCC 145472690315698draftimg1408477

External links

@ref: 35021

culture collection no.: CIP 69.41, ATCC 14547, NCIMB 41, CCUG 48664, LMG 4406, KCTC 12321

straininfo link

@refpassport
20218http://www.straininfo.net/strains/234996
20218http://www.straininfo.net/strains/54067
20218http://www.straininfo.net/strains/204877

literature

topicPubmed-IDtitleauthorsjournalDOIyearmeshtopic2
Pathogenicity10347079Response of pathogenic Vibrio species to high hydrostatic pressure.Berlin DL, Herson DS, Hicks DT, Hoover DGAppl Environ Microbiol10.1128/AEM.65.6.2776-2780.19991999Colony Count, Microbial, Disinfection/methods, Humans, *Hydrostatic Pressure, Vibrio/growth & development/isolation & purification/*physiology, Vibrio Infections/microbiologyEnzymology
Genetics16567412Freshwater bioluminescence in Vibrio albensis (Vibrio cholerae biovar albensis) NCIMB 41 is caused by a two-nucleotide deletion in luxO.Kasai SJ Biochem10.1093/jb/mvj0482006Amino Acid Sequence, Bacterial Proteins/*genetics/physiology, Base Sequence, Fresh Water/*microbiology, Luminescent Proteins/*genetics/physiology, Molecular Sequence Data, Repressor Proteins/*genetics/physiology, Sequence Deletion, Transcription Factors/*genetics/physiology, Vibrio cholerae/*genetics/physiology
Enzymology17169972Lateral transfer of the lux gene cluster.Kasai S, Okada K, Hoshino A, Iida T, Honda TJ Biochem10.1093/jb/mvm0232006Bacterial Proteins/*genetics, Blotting, Southern, Chromosome Mapping, Electrophoresis, Gel, Pulsed-Field, Gammaproteobacteria/*genetics, *Gene Transfer, Horizontal, Genes, Bacterial, Luminescence, Molecular Sequence Data, Multigene Family, *Operon, Oxidoreductases/*genetics, Photobacterium/genetics, Sequence Analysis, DNA, Shewanella/genetics, Vibrio/geneticsGenetics

Reference

@idauthorstitledoi/urljournalpubmedcatalogue
20215Parte, A.C., Sardà Carbasse, J., Meier-Kolthoff, J.P., Reimer, L.C. and Göker, M.List of Prokaryotic names with Standing in Nomenclature (LPSN) moves to the DSMZ10.1099/ijsem.0.004332
20218Verslyppe, B., De Smet, W., De Baets, B., De Vos, P., Dawyndt P.StrainInfo introduces electronic passports for microorganisms.10.1016/j.syapm.2013.11.002Syst Appl Microbiol. 37: 42-50 201424321274
35021Curators of the CIPhttps://brclims.pasteur.fr/brcWeb/souche/detail/1/10458 Collection of Institut Pasteur (CIP 69.41)
58282Curators of the CCUGhttps://www.ccug.se/strain?id=48664Culture Collection University of Gothenburg (CCUG) (CCUG 48664)
66792Julia Koblitz, Joaquim Sardà, Lorenz Christian Reimer, Boyke Bunk, Jörg OvermannAutomatically annotated for the DiASPora project (Digital Approaches for the Synthesis of Poorly Accessible Biodiversity Information)https://diaspora-project.de/progress.html#genomes
69480Julia Koblitz, Joaquim Sardà, Lorenz Christian Reimer, Boyke Bunk, Jörg OvermannPredictions based on genome sequence made in the Diaspora project (Digital Approaches for the Synthesis of Poorly Accessible Biodiversity Information)https://diaspora-project.de/progress.html#genomes