Strain identifier
version 7.1 (current version)
General
@ref: 35021
BacDive-ID: 135777
keywords: genome sequence, Bacteria, aerobe, mesophilic
description: Vibrio cholerae CIP 69.41 is an aerobe, mesophilic bacterium of the family Vibrionaceae.
NCBI tax id
- NCBI tax id: 666
- Matching level: species
doi: 10.13145/bacdive135777.20221219.7.1
Name and taxonomic classification
LPSN
- @ref: 20215
- description: domain/bacteria
- keyword: phylum/pseudomonadota
- domain: Bacteria
- phylum: Pseudomonadota
- class: Gammaproteobacteria
- order: Vibrionales
- family: Vibrionaceae
- genus: Vibrio
- species: Vibrio cholerae
- full scientific name: Vibrio cholerae Pacini 1854 (Approved Lists 1980)
synonyms
- @ref: 20215
- synonym: Vibrio albensis
@ref: 35021
domain: Bacteria
phylum: Proteobacteria
class: Gammaproteobacteria
order: Vibrionales
family: Vibrionaceae
genus: Vibrio
species: Vibrio cholerae
type strain: no
Morphology
cell morphology
| @ref | motility | confidence | gram stain |
|---|---|---|---|
| 69480 | yes | 84.092 | |
| 69480 | 99.507 | negative |
Culture and growth conditions
culture medium
- @ref: 35021
- name: MEDIUM 3 - Columbia agar
- growth: yes
- composition: Columbia agar (39.000 g);distilled water (1000.000 ml)
culture temp
| @ref | growth | type | temperature | range |
|---|---|---|---|---|
| 35021 | positive | growth | 30 | mesophilic |
| 58282 | positive | growth | 30 | mesophilic |
Physiology and metabolism
oxygen tolerance
- @ref: 58282
- oxygen tolerance: aerobe
spore formation
- @ref: 69480
- spore formation: no
- confidence: 97.858
halophily
- @ref: 69480
- halophily level: non-halophilic
- confidence: 89.222
Isolation, sampling and environmental information
isolation
| @ref | geographic location | country | origin.country | continent | sample type |
|---|---|---|---|---|---|
| 35021 | Elbe river | Germany | DEU | Europe | |
| 58282 | Elbe river | Germany | DEU | Europe | Fish |
isolation source categories
- Cat1: #Host
- Cat2: #Fishes
Sequence information
Genome sequences
| @ref | description | accession | assembly level | database | NCBI tax ID |
|---|---|---|---|---|---|
| 66792 | Vibrio albensis ATCC 14547 ATCC 14547 | GCA_000518145 | scaffold | ncbi | 1408477 |
| 66792 | Vibrio albensis ATCC 14547 | 1408477.3 | wgs | patric | 1408477 |
| 66792 | Vibrio albensis strain ATCC 14547 | 140100.3 | wgs | patric | 666 |
| 66792 | Vibrio albensis ATCC 14547 | 2545555863 | draft | img | 1408477 |
| 66792 | Vibrio albensis ATCC 14547 | 2690315698 | draft | img | 1408477 |
External links
@ref: 35021
culture collection no.: CIP 69.41, ATCC 14547, NCIMB 41, CCUG 48664, LMG 4406, KCTC 12321
straininfo link
| @ref | passport |
|---|---|
| 20218 | http://www.straininfo.net/strains/234996 |
| 20218 | http://www.straininfo.net/strains/54067 |
| 20218 | http://www.straininfo.net/strains/204877 |
literature
| topic | Pubmed-ID | title | authors | journal | DOI | year | mesh | topic2 |
|---|---|---|---|---|---|---|---|---|
| Pathogenicity | 10347079 | Response of pathogenic Vibrio species to high hydrostatic pressure. | Berlin DL, Herson DS, Hicks DT, Hoover DG | Appl Environ Microbiol | 10.1128/AEM.65.6.2776-2780.1999 | 1999 | Colony Count, Microbial, Disinfection/methods, Humans, *Hydrostatic Pressure, Vibrio/growth & development/isolation & purification/*physiology, Vibrio Infections/microbiology | Enzymology |
| Genetics | 16567412 | Freshwater bioluminescence in Vibrio albensis (Vibrio cholerae biovar albensis) NCIMB 41 is caused by a two-nucleotide deletion in luxO. | Kasai S | J Biochem | 10.1093/jb/mvj048 | 2006 | Amino Acid Sequence, Bacterial Proteins/*genetics/physiology, Base Sequence, Fresh Water/*microbiology, Luminescent Proteins/*genetics/physiology, Molecular Sequence Data, Repressor Proteins/*genetics/physiology, Sequence Deletion, Transcription Factors/*genetics/physiology, Vibrio cholerae/*genetics/physiology | |
| Enzymology | 17169972 | Lateral transfer of the lux gene cluster. | Kasai S, Okada K, Hoshino A, Iida T, Honda T | J Biochem | 10.1093/jb/mvm023 | 2006 | Bacterial Proteins/*genetics, Blotting, Southern, Chromosome Mapping, Electrophoresis, Gel, Pulsed-Field, Gammaproteobacteria/*genetics, *Gene Transfer, Horizontal, Genes, Bacterial, Luminescence, Molecular Sequence Data, Multigene Family, *Operon, Oxidoreductases/*genetics, Photobacterium/genetics, Sequence Analysis, DNA, Shewanella/genetics, Vibrio/genetics | Genetics |
Reference
| @id | authors | title | doi/url | journal | pubmed | catalogue |
|---|---|---|---|---|---|---|
| 20215 | Parte, A.C., Sardà Carbasse, J., Meier-Kolthoff, J.P., Reimer, L.C. and Göker, M. | List of Prokaryotic names with Standing in Nomenclature (LPSN) moves to the DSMZ | 10.1099/ijsem.0.004332 | |||
| 20218 | Verslyppe, B., De Smet, W., De Baets, B., De Vos, P., Dawyndt P. | StrainInfo introduces electronic passports for microorganisms. | 10.1016/j.syapm.2013.11.002 | Syst Appl Microbiol. 37: 42-50 2014 | 24321274 | |
| 35021 | Curators of the CIP | https://brclims.pasteur.fr/brcWeb/souche/detail/1/10458 | Collection of Institut Pasteur (CIP 69.41) | |||
| 58282 | Curators of the CCUG | https://www.ccug.se/strain?id=48664 | Culture Collection University of Gothenburg (CCUG) (CCUG 48664) | |||
| 66792 | Julia Koblitz, Joaquim Sardà, Lorenz Christian Reimer, Boyke Bunk, Jörg Overmann | Automatically annotated for the DiASPora project (Digital Approaches for the Synthesis of Poorly Accessible Biodiversity Information) | https://diaspora-project.de/progress.html#genomes | |||
| 69480 | Julia Koblitz, Joaquim Sardà, Lorenz Christian Reimer, Boyke Bunk, Jörg Overmann | Predictions based on genome sequence made in the Diaspora project (Digital Approaches for the Synthesis of Poorly Accessible Biodiversity Information) | https://diaspora-project.de/progress.html#genomes |