Strain identifier

BacDive ID: 135777

Type strain: No

Species: Vibrio cholerae

Strain history: CIP <- 1969, M. Véron, Necker Hosp. Paris, France <- NCIB <- 1958, R. Spencer, Photobacterium albensis <- A.J. Kluyver <- N. van der Walle <- C. Sonnenschein: strain Leuchtvibrio

NCBI tax ID(s): 666 (species)

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General

@ref: 35021

BacDive-ID: 135777

keywords: genome sequence, Bacteria, aerobe, mesophilic, motile

description: Vibrio cholerae CIP 69.41 is an aerobe, mesophilic, motile bacterium of the family Vibrionaceae.

NCBI tax id

  • NCBI tax id: 666
  • Matching level: species

strain history

  • @ref: 35021
  • history: CIP <- 1969, M. Véron, Necker Hosp. Paris, France <- NCIB <- 1958, R. Spencer, Photobacterium albensis <- A.J. Kluyver <- N. van der Walle <- C. Sonnenschein: strain Leuchtvibrio

doi: 10.13145/bacdive135777.20230509.8.1

Name and taxonomic classification

LPSN

  • @ref: 20215
  • description: domain/bacteria
  • keyword: phylum/pseudomonadota
  • domain: Bacteria
  • phylum: Pseudomonadota
  • class: Gammaproteobacteria
  • order: Vibrionales
  • family: Vibrionaceae
  • genus: Vibrio
  • species: Vibrio cholerae
  • full scientific name: Vibrio cholerae Pacini 1854 (Approved Lists 1980)

  • synonyms

    • @ref: 20215
    • synonym: Vibrio albensis

@ref: 35021

domain: Bacteria

phylum: Proteobacteria

class: Gammaproteobacteria

order: Vibrionales

family: Vibrionaceae

genus: Vibrio

species: Vibrio cholerae

type strain: no

Morphology

cell morphology

@refmotilityconfidencegram staincell shape
69480yes94.011
6948099.984negative
35021yesnegativerod-shaped

Culture and growth conditions

culture medium

@refnamegrowthcompositionlink
35021MEDIUM 3 - Columbia agaryesColumbia agar (39.000 g);distilled water (1000.000 ml)
35021CIP Medium 72yeshttps://catalogue-crbip.pasteur.fr/fiche_milieu.xhtml?crbip=72
35021CIP Medium 3yeshttps://catalogue-crbip.pasteur.fr/fiche_milieu.xhtml?crbip=3

culture temp

@refgrowthtypetemperaturerange
35021positivegrowth30mesophilic
58282positivegrowth30mesophilic
35021positivegrowth15-37
35021nogrowth5psychrophilic
35021nogrowth41thermophilic

Physiology and metabolism

oxygen tolerance

@refoxygen tolerance
58282aerobe
35021facultative anaerobe

spore formation

@refspore formationconfidence
69481no100
69480no99.959

halophily

@refsaltgrowthtested relationconcentration
35021NaClpositivegrowth2-6 %
35021NaClnogrowth0 %
35021NaClnogrowth8 %
35021NaClnogrowth10 %

metabolite utilization

@refmetaboliteutilization activitykind of utilization testedChebi-ID
68371Potassium 5-ketogluconate+builds acid from
68371Potassium 2-ketogluconate-builds acid from
68371gluconate+builds acid from24265
68371L-arabitol-builds acid from18403
68371D-arabitol-builds acid from18333
68371L-fucose-builds acid from18287
68371D-fucose-builds acid from28847
68371D-tagatose-builds acid from16443
68371D-lyxose-builds acid from62318
68371turanose-builds acid from32528
68371gentiobiose-builds acid from28066
68371xylitol-builds acid from17151
68371glycogen-builds acid from28087
68371starch-builds acid from28017
68371raffinose-builds acid from16634
68371melezitose-builds acid from6731
68371inulin-builds acid from15443
68371sucrose+builds acid from17992
68371melibiose-builds acid from28053
68371lactose-builds acid from17716
68371cellobiose-builds acid from17057
68371salicin-builds acid from17814
68371esculin-builds acid from4853
68371arbutin-builds acid from18305
68371amygdalin-builds acid from27613
68371N-acetylglucosamine+builds acid from59640
68371methyl alpha-D-glucopyranoside-builds acid from320061
68371methyl alpha-D-mannoside-builds acid from43943
68371D-sorbitol-builds acid from17924
68371myo-inositol-builds acid from17268
68371galactitol-builds acid from16813
68371L-rhamnose-builds acid from62345
68371L-sorbose-builds acid from17266
68371D-mannose-builds acid from16024
68371D-glucose+builds acid from17634
68371methyl beta-D-xylopyranoside-builds acid from74863
68371ribitol-builds acid from15963
68371L-xylose-builds acid from65328
68371D-xylose-builds acid from65327
68371D-ribose+builds acid from16988
68371L-arabinose-builds acid from30849
68371D-arabinose-builds acid from17108
68371erythritol-builds acid from17113
35021citrate-carbon source16947
35021esculin-hydrolysis4853
35021glucose+fermentation17234
35021lactose-fermentation17716
35021nitrate+reduction17632
35021nitrite-reduction16301
35021sodium thiosulfate-builds gas from132112
35021glucose+degradation17234
35021nitrate+respiration17632

antibiotic resistance

  • @ref: 35021
  • metabolite: 0129 (2,4-Diamino-6,7-di-iso-propylpteridine phosphate)
  • is antibiotic: yes
  • is sensitive: yes
  • is resistant: no

metabolite production

  • @ref: 35021
  • Chebi-ID: 35581
  • metabolite: indole
  • production: yes

metabolite tests

@refChebi-IDmetabolitevoges-proskauer-testmethylred-test
3502115688acetoin+
3502117234glucose-

enzymes

@refvalueactivityec
35021oxidase+
35021beta-galactosidase+3.2.1.23
35021alcohol dehydrogenase-1.1.1.1
35021gelatinase+
35021amylase+
35021DNase+
35021caseinase+3.4.21.50
35021catalase+1.11.1.6
35021tween esterase-
35021gamma-glutamyltransferase+2.3.2.2
35021lecithinase+
35021lipase+
35021lysine decarboxylase+4.1.1.18
35021ornithine decarboxylase+4.1.1.17
35021phenylalanine ammonia-lyase-4.3.1.24
35021protease+
35021tryptophan deaminase-
35021urease-3.5.1.5
68382alkaline phosphatase+3.1.3.1
68382esterase (C 4)+
68382esterase lipase (C 8)+
68382lipase (C 14)-
68382leucine arylamidase+3.4.11.1
68382valine arylamidase-
68382cystine arylamidase-3.4.11.3
68382trypsin-3.4.21.4
68382alpha-chymotrypsin-3.4.21.1
68382acid phosphatase+3.1.3.2
68382naphthol-AS-BI-phosphohydrolase+
68382alpha-galactosidase-3.2.1.22
68382beta-galactosidase-3.2.1.23
68382beta-glucuronidase-3.2.1.31
68382alpha-glucosidase-3.2.1.20
68382beta-glucosidase-3.2.1.21
68382N-acetyl-beta-glucosaminidase+3.2.1.52
68382alpha-mannosidase-3.2.1.24
68382alpha-fucosidase-3.2.1.51

API zym

@refControlAlkaline phosphataseEsteraseEsterase LipaseLipaseLeucine arylamidaseValine arylamidaseCystine arylamidaseTrypsinalpha- ChymotrypsinAcid phosphataseNaphthol-AS-BI-phosphohydrolasealpha- Galactosidasebeta- Galactosidasebeta- Glucuronidasealpha- Glucosidasebeta- GlucosidaseN-acetyl-beta- glucosaminidasealpha- Mannosidasealpha- Fucosidase
35021-+++-+----++-----+--

API 50CHac

@refGLYERYDARALARARIBDXYLLXYLADOMDXGALGLUFRUMNESBERHADULINOMANSORMDMMDGNAGAMYARBESCSALCELMALLACMELSACTREINUMLZRAFAMDGLYGXLTGENTURLYXTAGDFUCLFUCDARLLARLGNT2KG5KG
35021+/----+----+/-++/------+/----+-----+/---++/---------------+-+

API biotype100

@refGLUFRUGALTREMNESBEMELSACRAFMTEMALLACLTEMbGaMaGaCELGENMbGuESCRIBARAXYLPLERHAFUCMLZDARLLARLXLTDULTAGGLYINOMANMTLTURSORADOHBGLYXERYMDG3MDGSATMUCLTATDTATMTATDMLTLMLTCATETATETTECITGRTGAT2KG5KGTRYNAGGNTPACPATpOBEQATGTEmOBEBATPPATCMTTGEBETPCEABTHINLATCAPCYTHISSUCFUMGREGYTAVTETNTTNGLNITA3OBUAPTGTTPRODALALALASERMNTPROPTYR2KT
35021++-+---+---------+-+-----------+-+---------------+---+-----++--------------+--+++--------++-+-----+

Isolation, sampling and environmental information

isolation

@refgeographic locationcountryorigin.countrycontinentsample type
35021Elbe riverGermanyDEUEurope
58282Elbe riverGermanyDEUEuropeFish
35021Elbe riverGermanyDEUEuropeAnimal, Fish

isolation source categories

  • Cat1: #Host
  • Cat2: #Fishes

Safety information

risk assessment

  • @ref: 35021
  • biosafety level: 2
  • biosafety level comment: Risk group (French classification)

Sequence information

Genome sequences

@refdescriptionaccessionassembly leveldatabaseNCBI tax ID
66792Vibrio cholerae ATCC 14547GCA_000518145scaffoldncbi1408477
66792Vibrio albensis ATCC 145471408477.3wgspatric1408477
66792Vibrio albensis strain ATCC 14547140100.3wgspatric666
66792Vibrio albensis ATCC 145472545555863draftimg1408477
66792Vibrio albensis ATCC 145472690315698draftimg1408477

Genome-based predictions

predictions

traitpredictionconfidencetraining_data
spore-formingno100no
motileyes89.732no
flagellatedyes90.575no
gram-positiveno98.971no
anaerobicno95.475yes
halophileno51.271no
spore-formingno95.553no
thermophileno98.91yes
glucose-utilyes89.067no
aerobicyes83.31no
glucose-fermentyes86.961no

External links

@ref: 35021

culture collection no.: CIP 69.41, ATCC 14547, NCIMB 41, CCUG 48664, LMG 4406, KCTC 12321

straininfo link

  • @ref: 93066
  • straininfo: 13863

literature

topicPubmed-IDtitleauthorsjournalDOIyearmeshtopic2
Pathogenicity10347079Response of pathogenic Vibrio species to high hydrostatic pressure.Berlin DL, Herson DS, Hicks DT, Hoover DGAppl Environ Microbiol10.1128/AEM.65.6.2776-2780.19991999Colony Count, Microbial, Disinfection/methods, Humans, *Hydrostatic Pressure, Vibrio/growth & development/isolation & purification/*physiology, Vibrio Infections/microbiologyEnzymology
Genetics16567412Freshwater bioluminescence in Vibrio albensis (Vibrio cholerae biovar albensis) NCIMB 41 is caused by a two-nucleotide deletion in luxO.Kasai SJ Biochem10.1093/jb/mvj0482006Amino Acid Sequence, Bacterial Proteins/*genetics/physiology, Base Sequence, Fresh Water/*microbiology, Luminescent Proteins/*genetics/physiology, Molecular Sequence Data, Repressor Proteins/*genetics/physiology, Sequence Deletion, Transcription Factors/*genetics/physiology, Vibrio cholerae/*genetics/physiology
Enzymology17169972Lateral transfer of the lux gene cluster.Kasai S, Okada K, Hoshino A, Iida T, Honda TJ Biochem10.1093/jb/mvm0232006Bacterial Proteins/*genetics, Blotting, Southern, Chromosome Mapping, Electrophoresis, Gel, Pulsed-Field, Gammaproteobacteria/*genetics, *Gene Transfer, Horizontal, Genes, Bacterial, Luminescence, Molecular Sequence Data, Multigene Family, *Operon, Oxidoreductases/*genetics, Photobacterium/genetics, Sequence Analysis, DNA, Shewanella/genetics, Vibrio/geneticsGenetics

Reference

@idauthorstitledoi/urlcatalogue
20215Parte, A.C., Sardà Carbasse, J., Meier-Kolthoff, J.P., Reimer, L.C. and Göker, M.List of Prokaryotic names with Standing in Nomenclature (LPSN) moves to the DSMZ10.1099/ijsem.0.004332
35021Curators of the CIPhttps://catalogue-crbip.pasteur.fr/fiche_catalogue.xhtml?crbip=CIP%2069.41Collection of Institut Pasteur (CIP 69.41)
58282Curators of the CCUGhttps://www.ccug.se/strain?id=48664Culture Collection University of Gothenburg (CCUG) (CCUG 48664)
66792Julia Koblitz, Joaquim Sardà, Lorenz Christian Reimer, Boyke Bunk, Jörg OvermannAutomatically annotated for the DiASPora project (Digital Approaches for the Synthesis of Poorly Accessible Biodiversity Information)https://diaspora-project.de/progress.html#genomes
68371Automatically annotated from API 50CH acid
68382Automatically annotated from API zym
69480Julia Koblitz, Joaquim Sardà, Lorenz Christian Reimer, Boyke Bunk, Jörg OvermannPredictions based on genome sequence made in the Diaspora project (Digital Approaches for the Synthesis of Poorly Accessible Biodiversity Information)https://diaspora-project.de/progress.html#genomes
69481Xiao-Yin To, René Mreches, Martin Binder, Alice C. McHardy, Philipp C. MünchPredictions based on the model GenomeNet Sporulation v. 110.21203/rs.3.rs-2527258/v1
93066Reimer, L.C., Lissin, A.,Schober, I., Witte,J.F., Podstawka, A., Lüken, H., Bunk, B.,Overmann, J.StrainInfo: A central database for resolving microbial strain identifiers10.60712/SI-ID13863.1