Strain identifier

BacDive ID: 135758

Type strain: No

Species: Flavobacterium columnare

Strain history: CIP <- 2009, J.F. Bernardet, INRA, Jouy en Josas, France: strain JIP 14/00

NCBI tax ID(s): 996 (species)

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General

@ref: 34991

BacDive-ID: 135758

keywords: Bacteria, facultative anaerobe, psychrophilic, Gram-negative, rod-shaped

description: Flavobacterium columnare CIP 109951 is a facultative anaerobe, psychrophilic, Gram-negative bacterium of the family Flavobacteriaceae.

NCBI tax id

  • NCBI tax id: 996
  • Matching level: species

strain history

@refhistory
349912009, J.F. Bernardet, INRA, Jouy en Josas, France: strain JIP 14/00
34991CIP <- 2009, J.F. Bernardet, INRA, Jouy en Josas, France: strain JIP 14/00

doi: 10.13145/bacdive135758.20230509.8.1

Name and taxonomic classification

LPSN

  • @ref: 20215
  • description: domain/bacteria
  • keyword: phylum/bacteroidota
  • domain: Bacteria
  • phylum: Bacteroidota
  • class: Flavobacteriia
  • order: Flavobacteriales
  • family: Flavobacteriaceae
  • genus: Flavobacterium
  • species: Flavobacterium columnare
  • full scientific name: Flavobacterium columnare (Bernardet and Grimont 1989 ex Davis 1922) Bernardet et al. 1996

  • synonyms

    @refsynonym
    20215Cytophaga columnaris
    20215Flexibacter columnaris

@ref: 34991

domain: Bacteria

phylum: Bacteroidetes

class: Flavobacteriia

order: Flavobacteriales

family: Flavobacteriaceae

genus: Flavobacterium

species: Flavobacterium columnare

type strain: no

Morphology

cell morphology

  • @ref: 34991
  • gram stain: negative
  • cell shape: rod-shaped
  • motility: no

Culture and growth conditions

culture medium

@refnamegrowthcompositionlink
34991MEDIUM 714 - for Flavobacterium columnareyesDistilled water make up to (1000.000 ml);Agar (10.000 g);Yeast extract (0.500 g);Beef extract (0.200 g);Acetic acid (0.200 ml);Calf serum (50.000 ml);Bacto-Tryptone (0.500 g)
34991CIP Medium 714yeshttps://catalogue-crbip.pasteur.fr/fiche_milieu.xhtml?crbip=714
34991CIP Medium 566yeshttps://catalogue-crbip.pasteur.fr/fiche_milieu.xhtml?crbip=566

culture temp

  • @ref: 34991
  • growth: positive
  • type: growth
  • temperature: 20
  • range: psychrophilic

Physiology and metabolism

oxygen tolerance

  • @ref: 34991
  • oxygen tolerance: facultative anaerobe

metabolite utilization

@refChebi-IDmetaboliteutilization activitykind of utilization tested
3499117632nitrate-reduction
3499116301nitrite-reduction

metabolite production

  • @ref: 34991
  • Chebi-ID: 35581
  • metabolite: indole
  • production: no

enzymes

@refvalueactivityec
34991oxidase-
34991catalase+1.11.1.6
34991urease-3.5.1.5
68382alkaline phosphatase+3.1.3.1
68382esterase (C 4)+
68382esterase lipase (C 8)+
68382lipase (C 14)-
68382leucine arylamidase+3.4.11.1
68382valine arylamidase-
68382cystine arylamidase-3.4.11.3
68382trypsin+3.4.21.4
68382alpha-chymotrypsin-3.4.21.1
68382acid phosphatase+3.1.3.2
68382naphthol-AS-BI-phosphohydrolase+
68382alpha-galactosidase-3.2.1.22
68382beta-galactosidase-3.2.1.23
68382beta-glucuronidase-3.2.1.31
68382alpha-glucosidase-3.2.1.20
68382beta-glucosidase-3.2.1.21
68382N-acetyl-beta-glucosaminidase-3.2.1.52
68382alpha-mannosidase-3.2.1.24
68382alpha-fucosidase-3.2.1.51

API zym

@refControlAlkaline phosphataseEsteraseEsterase LipaseLipaseLeucine arylamidaseValine arylamidaseCystine arylamidaseTrypsinalpha- ChymotrypsinAcid phosphataseNaphthol-AS-BI-phosphohydrolasealpha- Galactosidasebeta- Galactosidasebeta- Glucuronidasealpha- Glucosidasebeta- GlucosidaseN-acetyl-beta- glucosaminidasealpha- Mannosidasealpha- Fucosidase
34991-+++-+--+-++--------

Isolation, sampling and environmental information

isolation

@refgeographic locationcountryorigin.countrycontinentsample typeisolation date
34991Jouy en JosasFranceFRAEurope
34991Jouy en JosasFranceFRAEuropeNeon fish, Paracheirodon innesi2000

Safety information

risk assessment

  • @ref: 34991
  • biosafety level: 1
  • biosafety level comment: Risk group (French classification)

External links

@ref: 34991

culture collection no.: CIP 109951, JIP 14/00

straininfo link

  • @ref: 93047
  • straininfo: 395472

Reference

@idauthorstitledoi/urlcatalogue
20215Parte, A.C., Sardà Carbasse, J., Meier-Kolthoff, J.P., Reimer, L.C. and Göker, M.List of Prokaryotic names with Standing in Nomenclature (LPSN) moves to the DSMZ10.1099/ijsem.0.004332
34991Curators of the CIPhttps://catalogue-crbip.pasteur.fr/fiche_catalogue.xhtml?crbip=CIP%20109951Collection of Institut Pasteur (CIP 109951)
68382Automatically annotated from API zym
93047Reimer, L.C., Lissin, A.,Schober, I., Witte,J.F., Podstawka, A., Lüken, H., Bunk, B.,Overmann, J.StrainInfo: A central database for resolving microbial strain identifiers10.60712/SI-ID395472.1