Strain identifier
version 9.3 (current version)
General
@ref: 34898
BacDive-ID: 135717
keywords: genome sequence, 16S sequence, Bacteria, mesophilic
description: Mycobacterium tuberculosis CIP 104256 is a mesophilic bacterium of the family Mycobacteriaceae.
NCBI tax id
- NCBI tax id: 1773
- Matching level: species
doi: 10.13145/bacdive135717.20250331.9.3
Name and taxonomic classification
LPSN
- @ref: 20215
- description: domain/bacteria
- keyword: phylum/actinomycetota
- domain: Bacteria
- phylum: Actinomycetota
- class: Actinomycetes
- order: Mycobacteriales
- family: Mycobacteriaceae
- genus: Mycobacterium
- species: Mycobacterium tuberculosis
- full scientific name: Mycobacterium tuberculosis (Zopf 1883) Lehmann and Neumann 1896 (Approved Lists 1980)
synonyms
@ref synonym 20215 Mycobacterium bovis subsp. caprae 20215 Mycobacterium microti 20215 Mycobacterium tuberculosis subsp. caprae 20215 Bacterium tuberculosis 20215 Mycobacterium caprae 20215 Mycobacterium pinnipedii 20215 Mycobacterium bovis 20215 Mycobacterium africanum
@ref: 34898
domain: Bacteria
phylum: Actinobacteria
class: Actinobacteria
order: Mycobacteriales
family: Mycobacteriaceae
genus: Mycobacterium
species: Mycobacterium microti
type strain: yes
Morphology
cell morphology
| @ref | motility | confidence | gram stain |
|---|---|---|---|
| 125438 | no | 91 | |
| 125438 | 90.681 | positive | |
| 125439 | 95.5 | positive |
Culture and growth conditions
culture medium
- @ref: 34898
- name: MEDIUM 55 - for Mycobacterium
- growth: yes
culture temp
- @ref: 34898
- growth: positive
- type: growth
- temperature: 37
Physiology and metabolism
oxygen tolerance
- @ref: 125439
- oxygen tolerance: obligate aerobe
- confidence: 98.1
Isolation, sampling and environmental information
isolation
- @ref: 34898
- geographic location: Oxford
- country: United Kingdom
- origin.country: GBR
- continent: Europe
Sequence information
16S sequences
- @ref: 124043
- description: Mycobacterium microti 16S ribosomal RNA gene, partial sequence.
- accession: AF480584
- length: 1484
- database: nuccore
- NCBI tax ID: 1806
Genome sequences
| @ref | description | accession | assembly level | database | NCBI tax ID |
|---|---|---|---|---|---|
| 66792 | Mycobacterium tuberculosis variant microti ATCC 19422 | GCA_002982215 | scaffold | ncbi | 1806 |
| 66792 | Mycobacterium microti strain ATCC 19422 | 1806.15 | wgs | patric | 1806 |
Genome-based predictions
predictions
| @ref | model | trait | description | prediction | confidence | training_data |
|---|---|---|---|---|---|---|
| 125438 | gram-positive | gram-positive | Positive reaction to Gram-staining | yes | 90.681 | no |
| 125438 | anaerobic | anaerobic | Ability to grow under anoxygenic conditions (including facultative anaerobes) | no | 97.6 | no |
| 125438 | aerobic | aerobic | Ability to grow under oxygenic conditions (including facultative aerobes) | yes | 75.572 | no |
| 125438 | spore-forming | spore-forming | Ability to form endo- or exospores | no | 64.18 | no |
| 125438 | thermophile | thermophilic | Ability to grow at temperatures above or equal to 45°C | no | 95.352 | yes |
| 125438 | motile2+ | flagellated | Ability to perform flagellated movement | no | 91 | no |
| 125439 | BacteriaNet | spore_formation | Ability to form endo- or exospores | no | 58.6 | |
| 125439 | BacteriaNet | motility | Ability to perform movement | no | 85.1 | |
| 125439 | BacteriaNet | gram_stain | Reaction to gram-staining | positive | 95.5 | |
| 125439 | BacteriaNet | oxygen_tolerance | Oxygenic conditions needed for growth | obligate aerobe | 98.1 |
External links
@ref: 34898
culture collection no.: CIP 104256, ATCC 19422, CCUG 21046, NCTC 8710
literature
- topic: Proteome
- Pubmed-ID: 34239815
- title: Accurate Identification of Closely Related Mycobacterium tuberculosis Complex Species by High Resolution Tandem Mass Spectrometry.
- authors: Bajaj AO, Saraswat S, Knuuttila JEA, Freeke J, Stielow JB, Barker AP
- journal: Front Cell Infect Microbiol
- DOI: 10.3389/fcimb.2021.656880
- year: 2021
- mesh: *Mycobacterium tuberculosis, Species Specificity, Tandem Mass Spectrometry
- topic2: Phylogeny
Reference
| @id | authors | title | doi/url | catalogue |
|---|---|---|---|---|
| 20215 | Parte, A.C., Sardà Carbasse, J., Meier-Kolthoff, J.P., Reimer, L.C. and Göker, M. | List of Prokaryotic names with Standing in Nomenclature (LPSN) moves to the DSMZ | 10.1099/ijsem.0.004332 | |
| 34898 | Curators of the CIP | https://catalogue-crbip.pasteur.fr/fiche_catalogue.xhtml?crbip=CIP%20104256 | Collection of Institut Pasteur (CIP 104256) | |
| 66792 | Julia Koblitz, Joaquim Sardà, Lorenz Christian Reimer, Boyke Bunk, Jörg Overmann | Automatically annotated for the DiASPora project (Digital Approaches for the Synthesis of Poorly Accessible Biodiversity Information) | https://diaspora-project.de/progress.html#genomes | |
| 124043 | Isabel Schober, Julia Koblitz | Data extracted from sequence databases, automatically matched based on designation and taxonomy | ||
| 125438 | Julia Koblitz, Lorenz Christian Reimer, Rüdiger Pukall, Jörg Overmann | Predicting bacterial phenotypic traits through improved machine learning using high-quality, curated datasets | 10.1101/2024.08.12.607695 | |
| 125439 | Philipp Münch, René Mreches, Martin Binder, Hüseyin Anil Gündüz, Xiao-Yin To, Alice McHardy | deepG: Deep Learning for Genome Sequence Data. R package version 0.3.1 | https://github.com/GenomeNet/deepG |