Strain identifier

BacDive ID: 135691

Type strain: No

Species: Pseudomonas mendocina

Strain Designation: CH 20

Strain history: CIP <- 1975, F. Pichinoty, CNRS, Marseille, France <- R.E. Solanes, Mendoza, Argentina: strain CH 20

NCBI tax ID(s): 300 (species)

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General

@ref: 34871

BacDive-ID: 135691

keywords: genome sequence, Bacteria, obligate aerobe, mesophilic, motile

description: Pseudomonas mendocina CH 20 is an obligate aerobe, mesophilic, motile bacterium that was isolated from Environment, Water enrichment with succinate as carbon source.

NCBI tax id

  • NCBI tax id: 300
  • Matching level: species

strain history

  • @ref: 34871
  • history: CIP <- 1975, F. Pichinoty, CNRS, Marseille, France <- R.E. Solanes, Mendoza, Argentina: strain CH 20

doi: 10.13145/bacdive135691.20230509.8.1

Name and taxonomic classification

LPSN

  • @ref: 20215
  • description: domain/bacteria
  • keyword: phylum/pseudomonadota
  • domain: Bacteria
  • phylum: Pseudomonadota
  • class: Gammaproteobacteria
  • order: Pseudomonadales
  • family: Pseudomonadaceae
  • genus: Pseudomonas
  • species: Pseudomonas mendocina
  • full scientific name: Pseudomonas mendocina Palleroni 1970 (Approved Lists 1980)

@ref: 34871

domain: Bacteria

phylum: Proteobacteria

class: Gammaproteobacteria

order: Pseudomonadales

family: Pseudomonadaceae

genus: Pseudomonas

species: Pseudomonas mendocina

strain designation: CH 20

type strain: no

Morphology

cell morphology

@refmotilityconfidencegram staincell shape
69480yes98.404
6948099.997negative
34871yesnegativerod-shaped

pigmentation

  • @ref: 34871
  • production: no
  • name: Pyocyanin

Culture and growth conditions

culture medium

@refnamegrowthcompositionlink
34871MEDIUM 3 - Columbia agaryesColumbia agar (39.000 g);distilled water (1000.000 ml)
34871CIP Medium 3yeshttps://catalogue-crbip.pasteur.fr/fiche_milieu.xhtml?crbip=3

culture temp

@refgrowthtypetemperaturerange
34871positivegrowth30mesophilic
34871positivegrowth30-45
34871nogrowth5psychrophilic

Physiology and metabolism

oxygen tolerance

  • @ref: 34871
  • oxygen tolerance: obligate aerobe

spore formation

@refspore formationconfidence
69481no100
69480no99.993

metabolite utilization

@refmetaboliteutilization activitykind of utilization testedChebi-ID
68371Potassium 5-ketogluconate-builds acid from
68371Potassium 2-ketogluconate-builds acid from
68371gluconate-builds acid from24265
68371L-arabitol-builds acid from18403
68371D-arabitol-builds acid from18333
68371L-fucose-builds acid from18287
68371D-fucose-builds acid from28847
68371D-tagatose-builds acid from16443
68371D-lyxose-builds acid from62318
68371turanose-builds acid from32528
68371gentiobiose-builds acid from28066
68371xylitol-builds acid from17151
68371glycogen-builds acid from28087
68371starch-builds acid from28017
68371raffinose-builds acid from16634
68371melezitose-builds acid from6731
68371inulin-builds acid from15443
68371trehalose+builds acid from27082
68371sucrose-builds acid from17992
68371melibiose-builds acid from28053
68371lactose-builds acid from17716
68371maltose+builds acid from17306
68371cellobiose-builds acid from17057
68371salicin-builds acid from17814
68371esculin-builds acid from4853
68371arbutin-builds acid from18305
68371amygdalin-builds acid from27613
68371N-acetylglucosamine-builds acid from59640
68371methyl alpha-D-glucopyranoside-builds acid from320061
68371methyl alpha-D-mannoside-builds acid from43943
68371D-sorbitol-builds acid from17924
68371D-mannitol+builds acid from16899
68371myo-inositol+builds acid from17268
68371galactitol-builds acid from16813
68371L-rhamnose-builds acid from62345
68371L-sorbose-builds acid from17266
68371D-mannose-builds acid from16024
68371D-fructose-builds acid from15824
68371D-glucose-builds acid from17634
68371D-galactose-builds acid from12936
68371methyl beta-D-xylopyranoside-builds acid from74863
68371ribitol-builds acid from15963
68371L-xylose-builds acid from65328
68371D-xylose-builds acid from65327
68371D-ribose-builds acid from16988
68371L-arabinose-builds acid from30849
68371D-arabinose-builds acid from17108
68371erythritol-builds acid from17113
68371glycerol-builds acid from17754
34871citrate+carbon source16947
34871esculin-hydrolysis4853
34871nitrate+reduction17632
34871nitrite+reduction16301
34871phenol-degradation15882
34871nitrate+respiration17632

enzymes

@refvalueactivityec
34871oxidase+
34871beta-galactosidase-3.2.1.23
34871alcohol dehydrogenase+1.1.1.1
34871gelatinase-
34871amylase-
34871caseinase-3.4.21.50
34871catalase+1.11.1.6
34871tween esterase+
34871lecithinase+
34871lysine decarboxylase-4.1.1.18
34871ornithine decarboxylase-4.1.1.17

API 50CHac

@refGLYERYDARALARARIBDXYLLXYLADOMDXGALGLUFRUMNESBERHADULINOMANSORMDMMDGNAGAMYARBESCSALCELMALLACMELSACTREINUMLZRAFAMDGLYGXLTGENTURLYXTAGDFUCLFUCDARLLARLGNT2KG5KG
34871----------------++---------+---+-----------------

Isolation, sampling and environmental information

isolation

  • @ref: 34871
  • sample type: Environment, Water enrichment with succinate as carbon source

Safety information

risk assessment

  • @ref: 34871
  • biosafety level: 1
  • biosafety level comment: Risk group (French classification)

Sequence information

Genome sequences

@refdescriptionaccessionassembly leveldatabaseNCBI tax ID
66792Pseudomonas mendocina NCTC10898GCA_900455585contigncbi300
66792Pseudomonas mendocina strain NCTC10898300.56wgspatric300

Genome-based predictions

predictions

traitpredictionconfidencetraining_data
spore-formingno100no
gram-positiveno98.856no
anaerobicno97.069no
halophileno86.604no
spore-formingno95.509no
glucose-utilyes91.894no
motileyes91.295no
flagellatedyes91.994no
aerobicyes92.709no
glucose-fermentno90.356no
thermophileno99.784no

External links

@ref: 34871

culture collection no.: CIP 75.19, ATCC 25412, LMG 5941, NCTC 10898, NCIMB 10542

straininfo link

  • @ref: 93002
  • straininfo: 4160

Reference

@idauthorstitledoi/urlcatalogue
20215Parte, A.C., Sardà Carbasse, J., Meier-Kolthoff, J.P., Reimer, L.C. and Göker, M.List of Prokaryotic names with Standing in Nomenclature (LPSN) moves to the DSMZ10.1099/ijsem.0.004332
34871Curators of the CIPhttps://catalogue-crbip.pasteur.fr/fiche_catalogue.xhtml?crbip=CIP%2075.19Collection of Institut Pasteur (CIP 75.19)
66792Julia Koblitz, Joaquim Sardà, Lorenz Christian Reimer, Boyke Bunk, Jörg OvermannAutomatically annotated for the DiASPora project (Digital Approaches for the Synthesis of Poorly Accessible Biodiversity Information)https://diaspora-project.de/progress.html#genomes
68371Automatically annotated from API 50CH acid
69480Julia Koblitz, Joaquim Sardà, Lorenz Christian Reimer, Boyke Bunk, Jörg OvermannPredictions based on genome sequence made in the Diaspora project (Digital Approaches for the Synthesis of Poorly Accessible Biodiversity Information)https://diaspora-project.de/progress.html#genomes
69481Xiao-Yin To, René Mreches, Martin Binder, Alice C. McHardy, Philipp C. MünchPredictions based on the model GenomeNet Sporulation v. 110.21203/rs.3.rs-2527258/v1
93002Reimer, L.C., Lissin, A.,Schober, I., Witte,J.F., Podstawka, A., Lüken, H., Bunk, B.,Overmann, J.StrainInfo: A central database for resolving microbial strain identifiers10.60712/SI-ID4160.1