Strain identifier
BacDive ID: 13568
Type strain: 
Species: Kaistia geumhonensis
Strain Designation: B1-1
Strain history: <- K. K. Kim, KAIST; B1-1 <- L. Jin
NCBI tax ID(s): 410839 (species)
version 8.1 (current version)
General
@ref: 7704
BacDive-ID: 13568
DSM-Number: 18799
keywords: genome sequence, 16S sequence, Bacteria, mesophilic
description: Kaistia geumhonensis B1-1 is a mesophilic bacterium that was isolated from river sediment.
NCBI tax id
- NCBI tax id: 410839
- Matching level: species
strain history
- @ref: 7704
- history: <- K. K. Kim, KAIST; B1-1 <- L. Jin
doi: 10.13145/bacdive13568.20230509.8.1
Name and taxonomic classification
LPSN
- @ref: 20215
- description: domain/bacteria
- keyword: phylum/pseudomonadota
- domain: Bacteria
- phylum: Pseudomonadota
- class: Alphaproteobacteria
- order: Hyphomicrobiales
- family: Kaistiaceae
- genus: Kaistia
- species: Kaistia geumhonensis
- full scientific name: Kaistia geumhonensis Jin et al. 2011
@ref: 7704
domain: Bacteria
phylum: Proteobacteria
class: Alphaproteobacteria
order: Rhizobiales
family: Kaistiaceae
genus: Kaistia
species: Kaistia geumhonensis
full scientific name: Kaistia geumhonensis Jin et al. 2011
strain designation: B1-1
type strain: yes
Culture and growth conditions
culture medium
- @ref: 7704
- name: R2A MEDIUM (DSMZ Medium 830)
- growth: yes
- link: https://mediadive.dsmz.de/medium/830
- composition: Name: R2A MEDIUM (DSMZ Medium 830) Composition: Agar 15.0 g/l Casamino acids 0.5 g/l Starch 0.5 g/l Glucose 0.5 g/l Proteose peptone 0.5 g/l Yeast extract 0.5 g/l K2HPO4 0.3 g/l Na-pyruvate 0.3 g/l MgSO4 x 7 H2O 0.05 g/l Distilled water
culture temp
- @ref: 7704
- growth: positive
- type: growth
- temperature: 28
- range: mesophilic
Isolation, sampling and environmental information
isolation
- @ref: 7704
- sample type: river sediment
- geographic location: Geumho River
- country: Republic of Korea
- origin.country: KOR
- continent: Asia
isolation source categories
| Cat1 | Cat2 | Cat3 |
|---|---|---|
| #Environmental | #Aquatic | #River (Creek) |
| #Environmental | #Aquatic | #Sediment |
taxonmaps
- @ref: 69479
- File name: preview.99_70696.png
- url: https://microbeatlas.org/index.html?action=taxon&taxon_id=90_5;96_3060;97_3758;98_4769;99_70696&stattab=map
- Last taxonomy: Kaistia geumhonensis
- 16S sequence: AM409363
- Sequence Identity:
- Total samples: 742
- soil counts: 237
- aquatic counts: 374
- animal counts: 92
- plant counts: 39
Safety information
risk assessment
- @ref: 7704
- biosafety level: 1
- biosafety level comment: Risk group (German classification)
Sequence information
16S sequences
- @ref: 7704
- description: Kaistia geumhonensis partial 16S rRNA gene, strain B1-1
- accession: AM409363
- length: 1449
- database: ena
- NCBI tax ID: 410839
Genome sequences
| @ref | description | accession | assembly level | database | NCBI tax ID |
|---|---|---|---|---|---|
| 66792 | Kaistia geumhonensis DSM 18799 | 2928557508 | draft | img | 410839 |
| 66792 | Kaistia geumhonensis DSM 18799 | GCA_026344055 | contig | ncbi | 410839 |
GC content
- @ref: 7704
- GC-content: 61.6
- method: high performance liquid chromatography (HPLC)
External links
@ref: 7704
culture collection no.: DSM 18799, KCTC 12849
straininfo link
- @ref: 82756
- straininfo: 397710
literature
| topic | Pubmed-ID | title | authors | journal | DOI | year | mesh | topic2 |
|---|---|---|---|---|---|---|---|---|
| Phylogeny | 21131499 | Kaistia geumhonensis sp. nov. and Kaistia dalseonensis sp. nov., two members of the class Alphaproteobacteria. | Jin L, Kim KK, Baek SH, Lee ST | Int J Syst Evol Microbiol | 10.1099/ijs.0.028894-0 | 2010 | Base Composition, DNA, Bacterial/genetics, Fatty Acids/metabolism, Korea, Molecular Sequence Data, Phylogeny, RNA, Ribosomal, 16S/genetics, Rhizobiaceae/*classification/genetics/*isolation & purification/metabolism, Rivers/*microbiology | Metabolism |
| Phylogeny | 22247212 | Kaistia defluvii sp. nov., isolated from river sediment. | Jin L, Kim KK, Lee HG, Ahn CY, Oh HM | Int J Syst Evol Microbiol | 10.1099/ijs.0.038687-0 | 2012 | Bacterial Typing Techniques, Base Composition, DNA, Bacterial/genetics, Fatty Acids/analysis, Geologic Sediments/*microbiology, Molecular Sequence Data, Nucleic Acid Hybridization, *Phylogeny, RNA, Ribosomal, 16S/genetics, Republic of Korea, Rhizobiaceae/*classification/genetics/isolation & purification, Rivers/*microbiology, Sequence Analysis, DNA, Sewage/microbiology, Ubiquinone/analogs & derivatives/analysis | Genetics |
| Phylogeny | 30063201 | Kaistia algarum sp. nov., isolated from a freshwater green alga Paulinella chromatophora. | Lee Y, Jeon CO | Int J Syst Evol Microbiol | 10.1099/ijsem.0.002943 | 2018 | Bacterial Typing Techniques, Base Composition, Chlorophyta/*microbiology, DNA, Bacterial/genetics, Fatty Acids/chemistry, Fresh Water/microbiology, Nucleic Acid Hybridization, Phospholipids/chemistry, *Phylogeny, RNA, Ribosomal, 16S/genetics, Republic of Korea, Rhizobiaceae/*classification/genetics/isolation & purification, Sequence Analysis, DNA, Ubiquinone/analogs & derivatives/chemistry | Transcriptome |
Reference
| @id | authors | catalogue | doi/url | title |
|---|---|---|---|---|
| 7704 | Curators of the DSMZ | Leibniz Institut DSMZ-Deutsche Sammlung von Mikroorganismen und Zellkulturen GmbH (DSM 18799) | https://www.dsmz.de/collection/catalogue/details/culture/DSM-18799 | |
| 20215 | Parte, A.C., Sardà Carbasse, J., Meier-Kolthoff, J.P., Reimer, L.C. and Göker, M. | 10.1099/ijsem.0.004332 | List of Prokaryotic names with Standing in Nomenclature (LPSN) moves to the DSMZ | |
| 66792 | Julia Koblitz, Joaquim Sardà, Lorenz Christian Reimer, Boyke Bunk, Jörg Overmann | https://diaspora-project.de/progress.html#genomes | Automatically annotated for the DiASPora project (Digital Approaches for the Synthesis of Poorly Accessible Biodiversity Information) | |
| 69479 | João F Matias Rodrigues, Janko Tackmann,Gregor Rot, Thomas SB Schmidt, Lukas Malfertheiner, Mihai Danaila,Marija Dmitrijeva, Daniela Gaio, Nicolas Näpflin and Christian von Mering. University of Zurich. | https://microbeatlas.org/ | MicrobeAtlas 1.0 beta | |
| 82756 | Reimer, L.C., Lissin, A.,Schober, I., Witte,J.F., Podstawka, A., Lüken, H., Bunk, B.,Overmann, J. | 10.60712/SI-ID397710.1 | StrainInfo: A central database for resolving microbial strain identifiers |