Strain identifier
BacDive ID: 135644
Type strain: 
Species: Bifidobacterium longum
Strain Designation: S3
Strain history: CIP <- 1964, Lab. Ident. Inst. Pasteur, Paris, France <- M. Sebald, Inst. Pasteur, Paris, France <- H. Werner <- G. Reuter: strain S3
NCBI tax ID(s): 216816 (species)
version 8.1 (current version)
General
@ref: 34822
BacDive-ID: 135644
keywords: 16S sequence, Bacteria, mesophilic
description: Bifidobacterium longum S3 is a mesophilic bacterium that was isolated from Intestine of infant.
NCBI tax id
- NCBI tax id: 216816
- Matching level: species
strain history
| @ref | history |
|---|---|
| 67770 | T. Mitsuoka IV-54 <-- G. Reuter S3 (Variant b). |
| 34822 | CIP <- 1964, Lab. Ident. Inst. Pasteur, Paris, France <- M. Sebald, Inst. Pasteur, Paris, France <- H. Werner <- G. Reuter: strain S3 |
doi: 10.13145/bacdive135644.20230509.8.1
Name and taxonomic classification
LPSN
- @ref: 20215
- description: domain/bacteria
- keyword: phylum/actinomycetota
- domain: Bacteria
- phylum: Actinomycetota
- class: Actinomycetes
- order: Bifidobacteriales
- family: Bifidobacteriaceae
- genus: Bifidobacterium
- species: Bifidobacterium longum
- full scientific name: Bifidobacterium longum Reuter 1963 (Approved Lists 1980)
@ref: 34822
domain: Bacteria
phylum: Actinobacteria
class: Actinobacteria
order: Bifidobacteriales
family: Bifidobacteriaceae
genus: Bifidobacterium
species: Bifidobacterium longum
strain designation: S3
type strain: no
Culture and growth conditions
culture medium
| @ref | name | growth | composition | link |
|---|---|---|---|---|
| 34822 | MEDIUM 20 - for Anaerobic bacteria | yes | Agar (15.000 g);Glucose (5.000 g);Yeast extract (20.000 g);Tryptone (30.000 g);Cysteine hydrochloride (0.500 g);distilled water (1000.000 ml);Hemin solution -M00149 (25.000 ml) | |
| 34822 | CIP Medium 20 | yes | https://catalogue-crbip.pasteur.fr/fiche_milieu.xhtml?crbip=20 |
culture temp
| @ref | growth | type | temperature | range |
|---|---|---|---|---|
| 34822 | positive | growth | 37 | mesophilic |
| 67770 | positive | growth | 37 | mesophilic |
Isolation, sampling and environmental information
isolation
| @ref | sample type |
|---|---|
| 67770 | Intestine of infant |
| 34822 | Human, Infant, intestine |
Safety information
risk assessment
- @ref: 34822
- biosafety level: 1
- biosafety level comment: Risk group (French classification)
Sequence information
16S sequences
- @ref: 67770
- description: Bifidobacterium longum ATCC 15708 16S ribosomal RNA
- accession: U10152
- length: 1455
- database: ena
- NCBI tax ID: 216816
External links
@ref: 34822
culture collection no.: CIP 64.63, ATCC 15708, JCM 7054, BCRC 14634, LMG 10498
straininfo link
- @ref: 92961
- straininfo: 1253
literature
| topic | Pubmed-ID | title | authors | journal | DOI | year | mesh | topic2 |
|---|---|---|---|---|---|---|---|---|
| Metabolism | 8792277 | Improvement of lactose digestion in humans by ingestion of unfermented milk containing Bifidobacterium longum. | Jiang T, Mustapha A, Savaiano DA | J Dairy Sci | 10.3168/jds.S0022-0302(96)76422-6 | 1996 | Adult, Animals, Bifidobacterium/*metabolism, Breath Tests, *Digestion, Double-Blind Method, Female, Fermentation, Glucose/metabolism, Humans, Hydrogen/metabolism, Lactose/*metabolism, Lactose Intolerance/metabolism/*therapy, Male, Milk/*microbiology, beta-Galactosidase/metabolism | Pathogenicity |
| Pathogenicity | 8872711 | Growth characteristics of bifidobacteria in infant formulas. | Dubey UK, Mistry VV | J Dairy Sci | 10.3168/jds.S0022-0302(96)76468-8 | 1996 | Acetic Acid/metabolism, Animals, Bifidobacterium/cytology/*growth & development, Buffers, Caseins, Fats/analysis, Humans, Hydrogen-Ion Concentration, Infant Food/analysis/*microbiology, Infant, Newborn, Kinetics, Lactic Acid/biosynthesis, Milk, Protein Hydrolysates, Proteins/analysis, Soybeans | Enzymology |
| Pathogenicity | 8872712 | Effect of bifidogenic factors on growth characteristics of bifidobacteria in infant formulas. | Dubey UK, Mistry VV | J Dairy Sci | 10.3168/jds.S0022-0302(96)76469-X | 1996 | Acetic Acid/metabolism, Bifidobacterium/*drug effects/*growth & development, Caseins, Colony Count, Microbial, Fructose/*pharmacology, Humans, Hydrogen-Ion Concentration, Infant, Infant Food/analysis/*microbiology, Lactic Acid/biosynthesis, Lactulose/*pharmacology, Oligosaccharides/*pharmacology, Protein Hydrolysates, Soybeans | Metabolism |
| Pathogenicity | 11003222 | Viability of microencapsulated bifidobacteria in set yogurt during refrigerated storage. | Adhikari K, Mustapha A, Grun IU, Fernando L | J Dairy Sci | 10.3168/jds.S0022-0302(00)75070-3 | 2000 | Acetic Acid/analysis, Bifidobacterium/*growth & development, Carrageenan, Colony Count, Microbial, Consumer Behavior, Drug Compounding, *Food Preservation, Humans, Hydrogen-Ion Concentration, Lactic Acid/analysis, *Probiotics, *Refrigeration, Taste, Time Factors, Yogurt/*microbiology/standards | |
| Metabolism | 11007114 | Antioxidative effect of intestinal bacteria Bifidobacterium longum ATCC 15708 and Lactobacillus acidophilus ATCC 4356. | Lin MY, Chang FJ | Dig Dis Sci | 10.1023/a:1005577330695 | 2000 | Bifidobacterium/*physiology, Free Radical Scavengers, Intestines/*microbiology, Lactobacillus acidophilus/*physiology, Linoleic Acids/metabolism, Lipid Peroxidation, Nitroquinolines/metabolism, Oxidation-Reduction | |
| Enzymology | 14762068 | Purification and characterization of three different types of bile salt hydrolases from Bifidobacterium strains. | Kim GB, Yi SH, Lee BH | J Dairy Sci | 10.3168/jds.S0022-0302(04)73164-1 | 2004 | Amidohydrolases/chemistry/*isolation & purification/metabolism, Amino Acid Sequence, Bifidobacterium/*enzymology, Chromatography, Ion Exchange, Electrophoresis, Polyacrylamide Gel, Isoelectric Point, Substrate Specificity | Phylogeny |
| 20832691 | The determination of viable counts in probiotic cultures microencapsulated by spray-coating. | Champagne CP, Raymond Y, Tompkins TA | Food Microbiol | 10.1016/j.fm.2010.07.017 | 2010 | Bifidobacterium/chemistry/*growth & development, Colony Count, Microbial/*methods, *Drug Compounding, Freeze Drying, Lactobacillus rhamnosus/chemistry/*growth & development, *Microbial Viability, Particle Size, Probiotics/*chemistry | ||
| Pathogenicity | 20884069 | Exopolysaccharide activities from probiotic bifidobacterium: Immunomodulatory effects (on J774A.1 macrophages) and antimicrobial properties. | Wu MH, Pan TM, Wu YJ, Chang SJ, Chang MS, Hu CY | Int J Food Microbiol | 10.1016/j.ijfoodmicro.2010.09.003 | 2010 | Animals, Anti-Infective Agents/immunology/metabolism/*pharmacology, Bifidobacterium/*chemistry/immunology, Cell Line, Cell Proliferation/drug effects, Gene Expression Regulation/drug effects, Immunologic Factors/*pharmacology, Interleukin-10/immunology, Lipopolysaccharides/pharmacology, Macrophages/*drug effects/immunology, Mice, Polysaccharides, Bacterial/isolation & purification/*pharmacology, *Probiotics, Tumor Necrosis Factor-alpha/immunology | Metabolism |
| Metabolism | 24013960 | Utilization of major fucosylated and sialylated human milk oligosaccharides by isolated human gut microbes. | Yu ZT, Chen C, Newburg DS | Glycobiology | 10.1093/glycob/cwt065 | 2013 | Bacterial Proteins/metabolism, Bacteroides/growth & development/isolation & purification/metabolism, Bifidobacterium/growth & development/isolation & purification/metabolism, Clostridium/growth & development/isolation & purification/metabolism, Culture Media, Enterococcus faecalis/growth & development/isolation & purification/metabolism, Escherichia coli K12/growth & development/isolation & purification/metabolism, Fucose/metabolism, Gastrointestinal Tract/*microbiology, Glycosylation, Humans, Hydrogen-Ion Concentration, Lactobacillus delbrueckii/growth & development/isolation & purification/metabolism, *Microbiota, Milk, Human/*metabolism, Oligosaccharides/*metabolism, Sialic Acids/metabolism, Streptococcus thermophilus/growth & development/isolation & purification/metabolism, alpha-L-Fucosidase/metabolism | Phylogeny |
| Phylogeny | 29116036 | Bifidobacterium callitrichidarum sp. nov. from the faeces of the emperor tamarin (Saguinus imperator). | Modesto M, Michelini S, Sansosti MC, De Filippo C, Cavalieri D, Qvirist L, Andlid T, Spiezio C, Sandri C, Pascarelli S, Sgorbati B, Mattarelli P | Int J Syst Evol Microbiol | 10.1099/ijsem.0.002472 | 2017 | Aldehyde-Lyases/chemistry, Animals, Bacterial Typing Techniques, Base Composition, Bifidobacterium/*classification/genetics/isolation & purification, DNA, Bacterial/genetics, Fatty Acids/chemistry, Feces/microbiology, Multilocus Sequence Typing, Peptidoglycan/chemistry, *Phylogeny, RNA, Ribosomal, 16S/genetics, Saguinus/*microbiology, Sequence Analysis, DNA | Transcriptome |
| Phylogeny | 30150092 | Bifidobacterium primatium sp. nov., Bifidobacterium scaligerum sp. nov., Bifidobacterium felsineum sp. nov. and Bifidobacterium simiarum sp. nov.: Four novel taxa isolated from the faeces of the cotton top tamarin (Saguinus oedipus) and the emperor tamarin (Saguinus imperator). | Modesto M, Puglisi E, Bonetti A, Michelini S, Spiezio C, Sandri C, Sgorbati B, Morelli L, Mattarelli P | Syst Appl Microbiol | 10.1016/j.syapm.2018.07.005 | 2018 | Aldehyde-Lyases/genetics, Animals, Animals, Zoo/microbiology, Bacterial Typing Techniques, Bifidobacterium/*classification/genetics/isolation & purification, DNA, Bacterial/genetics, Feces/*microbiology, Italy, Peptidoglycan/chemistry, *Phylogeny, RNA, Ribosomal, 16S/genetics, Saguinus/*microbiology, Sequence Analysis, DNA | Transcriptome |
| 32380678 | Lyophilized Probiotic Lactic Acid Bacteria Viability in Potato Chips and Its Impact on Oil Oxidation. | Mostafa H | Foods | 10.3390/foods9050586 | 2020 |
Reference
| @id | authors | title | doi/url | catalogue |
|---|---|---|---|---|
| 20215 | Parte, A.C., Sardà Carbasse, J., Meier-Kolthoff, J.P., Reimer, L.C. and Göker, M. | List of Prokaryotic names with Standing in Nomenclature (LPSN) moves to the DSMZ | 10.1099/ijsem.0.004332 | |
| 34822 | Curators of the CIP | https://catalogue-crbip.pasteur.fr/fiche_catalogue.xhtml?crbip=CIP%2064.63 | Collection of Institut Pasteur (CIP 64.63) | |
| 67770 | Curators of the JCM | https://jcm.brc.riken.jp/en/ | ||
| 92961 | Reimer, L.C., Lissin, A.,Schober, I., Witte,J.F., Podstawka, A., Lüken, H., Bunk, B.,Overmann, J. | StrainInfo: A central database for resolving microbial strain identifiers | 10.60712/SI-ID1253.1 |