Strain identifier
BacDive ID: 135629
Type strain: 
Species: Escherichia coli
Strain Designation: E6912
Strain history: CIP <- 1962, L. Le Minor, Inst. Pasteur, Paris, France <- F. Kauffmann, Stat. Ser., Copenhagen, Denmark: strain E6912
NCBI tax ID(s): 562 (species)
version 8.1 (current version)
General
@ref: 34805
BacDive-ID: 135629
keywords: genome sequence, Bacteria, mesophilic, motile
description: Escherichia coli E6912 is a mesophilic, motile bacterium that was isolated from Unknown source.
NCBI tax id
- NCBI tax id: 562
- Matching level: species
strain history
- @ref: 34805
- history: CIP <- 1962, L. Le Minor, Inst. Pasteur, Paris, France <- F. Kauffmann, Stat. Ser., Copenhagen, Denmark: strain E6912
doi: 10.13145/bacdive135629.20230509.8.1
Name and taxonomic classification
LPSN
- @ref: 20215
- description: domain/bacteria
- keyword: phylum/pseudomonadota
- domain: Bacteria
- phylum: Pseudomonadota
- class: Gammaproteobacteria
- order: Enterobacterales
- family: Enterobacteriaceae
- genus: Escherichia
- species: Escherichia coli
- full scientific name: Escherichia coli (Migula 1895) Castellani and Chalmers 1919 (Approved Lists 1980)
synonyms
- @ref: 20215
- synonym: Bacillus coli
@ref: 34805
domain: Bacteria
phylum: Proteobacteria
class: Gammaproteobacteria
order: Enterobacterales
family: Enterobacteriaceae
genus: Escherichia
species: Escherichia coli
strain designation: E6912
type strain: no
Morphology
cell morphology
| @ref | motility | confidence | gram stain |
|---|---|---|---|
| 69480 | yes | 96.297 | |
| 69480 | 99.98 | negative |
Culture and growth conditions
culture medium
| @ref | name | growth | composition | link |
|---|---|---|---|---|
| 34805 | MEDIUM 3 - Columbia agar | yes | Columbia agar (39.000 g);distilled water (1000.000 ml) | |
| 34805 | CIP Medium 3 | yes | https://catalogue-crbip.pasteur.fr/fiche_milieu.xhtml?crbip=3 |
culture temp
- @ref: 34805
- growth: positive
- type: growth
- temperature: 30
- range: mesophilic
Physiology and metabolism
spore formation
| @ref | spore formation | confidence |
|---|---|---|
| 69481 | no | 100 |
| 69480 | no | 99.641 |
Isolation, sampling and environmental information
isolation
- @ref: 34805
- sample type: Unknown source
Safety information
risk assessment
- @ref: 34805
- biosafety level: 2
- biosafety level comment: Risk group (French classification)
Sequence information
Genome sequences
| @ref | description | accession | assembly level | database | NCBI tax ID |
|---|---|---|---|---|---|
| 66792 | Escherichia coli NCTC9855 | GCA_900449155 | contig | ncbi | 562 |
| 66792 | Escherichia coli strain NCTC9855 | 562.34229 | wgs | patric | 562 |
Genome-based predictions
predictions
| trait | prediction | confidence | training_data |
|---|---|---|---|
| spore-forming | no | 100 | no |
| gram-positive | no | 98.315 | no |
| anaerobic | no | 95.195 | no |
| halophile | no | 90.535 | no |
| spore-forming | no | 93.882 | no |
| glucose-util | yes | 93.858 | no |
| thermophile | no | 98.996 | no |
| flagellated | no | 52.565 | no |
| aerobic | yes | 87.975 | no |
| motile | yes | 87.621 | no |
| glucose-ferment | yes | 92.262 | no |
External links
@ref: 34805
culture collection no.: CIP 62.22, NCTC 9855
straininfo link
- @ref: 92950
- straininfo: 68530
Reference
| @id | authors | title | doi/url | catalogue |
|---|---|---|---|---|
| 20215 | Parte, A.C., Sardà Carbasse, J., Meier-Kolthoff, J.P., Reimer, L.C. and Göker, M. | List of Prokaryotic names with Standing in Nomenclature (LPSN) moves to the DSMZ | 10.1099/ijsem.0.004332 | |
| 34805 | Curators of the CIP | https://catalogue-crbip.pasteur.fr/fiche_catalogue.xhtml?crbip=CIP%2062.22 | Collection of Institut Pasteur (CIP 62.22) | |
| 66792 | Julia Koblitz, Joaquim Sardà, Lorenz Christian Reimer, Boyke Bunk, Jörg Overmann | Automatically annotated for the DiASPora project (Digital Approaches for the Synthesis of Poorly Accessible Biodiversity Information) | https://diaspora-project.de/progress.html#genomes | |
| 69480 | Julia Koblitz, Joaquim Sardà, Lorenz Christian Reimer, Boyke Bunk, Jörg Overmann | Predictions based on genome sequence made in the Diaspora project (Digital Approaches for the Synthesis of Poorly Accessible Biodiversity Information) | https://diaspora-project.de/progress.html#genomes | |
| 69481 | Xiao-Yin To, René Mreches, Martin Binder, Alice C. McHardy, Philipp C. Münch | Predictions based on the model GenomeNet Sporulation v. 1 | 10.21203/rs.3.rs-2527258/v1 | |
| 92950 | Reimer, L.C., Lissin, A.,Schober, I., Witte,J.F., Podstawka, A., Lüken, H., Bunk, B.,Overmann, J. | StrainInfo: A central database for resolving microbial strain identifiers | 10.60712/SI-ID68530.1 |