Strain identifier

BacDive ID: 135613

Type strain: No

Species: Pseudomonas aeruginosa

Strain Designation: EML538, 14947/1955-226, A443/1955

Strain history: CIP <- 1959, H. Kleinmaier, Hyg. Inst., Bonn, Germany: strain 14947/1955-226

NCBI tax ID(s): 287 (species)

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General

@ref: 34787

BacDive-ID: 135613

keywords: genome sequence, Bacteria, obligate aerobe, mesophilic, motile

description: Pseudomonas aeruginosa EML538 is an obligate aerobe, mesophilic, motile bacterium that was isolated from Unknown source.

NCBI tax id

  • NCBI tax id: 287
  • Matching level: species

strain history

  • @ref: 34787
  • history: CIP <- 1959, H. Kleinmaier, Hyg. Inst., Bonn, Germany: strain 14947/1955-226

doi: 10.13145/bacdive135613.20230509.8.1

Name and taxonomic classification

LPSN

  • @ref: 20215
  • description: domain/bacteria
  • keyword: phylum/pseudomonadota
  • domain: Bacteria
  • phylum: Pseudomonadota
  • class: Gammaproteobacteria
  • order: Pseudomonadales
  • family: Pseudomonadaceae
  • genus: Pseudomonas
  • species: Pseudomonas aeruginosa
  • full scientific name: Pseudomonas aeruginosa (Schroeter 1872) Migula 1900 (Approved Lists 1980)

  • synonyms

    • @ref: 20215
    • synonym: Bacterium aeruginosum

@ref: 34787

domain: Bacteria

phylum: Proteobacteria

class: Gammaproteobacteria

order: Pseudomonadales

family: Pseudomonadaceae

genus: Pseudomonas

species: Pseudomonas aeruginosa

strain designation: EML538, 14947/1955-226, A443/1955

type strain: no

Morphology

cell morphology

@refmotilityconfidencegram staincell shape
69480yes99.452
6948099.989negative
34787yesnegativerod-shaped

pigmentation

  • @ref: 34787
  • production: yes
  • name: Pyocyanin

Culture and growth conditions

culture medium

@refnamegrowthcompositionlink
34787MEDIUM 3 - Columbia agaryesColumbia agar (39.000 g);distilled water (1000.000 ml)
34787CIP Medium 3yeshttps://catalogue-crbip.pasteur.fr/fiche_milieu.xhtml?crbip=3

culture temp

@refgrowthtypetemperaturerange
34787positivegrowth30mesophilic
34787positivegrowth25-41
34787nogrowth5psychrophilic
34787nogrowth10psychrophilic

Physiology and metabolism

oxygen tolerance

  • @ref: 34787
  • oxygen tolerance: obligate aerobe

spore formation

@refspore formationconfidence
69481no100
69480no99.926

halophily

@refsaltgrowthtested relationconcentration
34787NaClpositivegrowth0-6 %
34787NaClnogrowth8 %
34787NaClnogrowth10 %

metabolite utilization

@refmetaboliteutilization activitykind of utilization testedChebi-ID
68371Potassium 5-ketogluconate-builds acid from
68371Potassium 2-ketogluconate-builds acid from
68371gluconate-builds acid from24265
68371L-arabitol-builds acid from18403
68371D-arabitol-builds acid from18333
68371L-fucose-builds acid from18287
68371D-fucose-builds acid from28847
68371D-tagatose-builds acid from16443
68371D-lyxose-builds acid from62318
68371turanose-builds acid from32528
68371gentiobiose-builds acid from28066
68371xylitol-builds acid from17151
68371glycogen-builds acid from28087
68371starch-builds acid from28017
68371raffinose-builds acid from16634
68371melezitose-builds acid from6731
68371inulin-builds acid from15443
68371trehalose-builds acid from27082
68371sucrose-builds acid from17992
68371melibiose-builds acid from28053
68371lactose-builds acid from17716
68371maltose-builds acid from17306
68371cellobiose-builds acid from17057
68371salicin-builds acid from17814
68371esculin-builds acid from4853
68371arbutin-builds acid from18305
68371amygdalin-builds acid from27613
68371N-acetylglucosamine-builds acid from59640
68371methyl alpha-D-glucopyranoside-builds acid from320061
68371methyl alpha-D-mannoside-builds acid from43943
68371D-sorbitol-builds acid from17924
68371D-mannitol-builds acid from16899
68371myo-inositol-builds acid from17268
68371galactitol-builds acid from16813
68371L-rhamnose-builds acid from62345
68371L-sorbose-builds acid from17266
68371D-mannose-builds acid from16024
68371D-fructose-builds acid from15824
68371D-glucose-builds acid from17634
68371D-galactose-builds acid from12936
68371methyl beta-D-xylopyranoside-builds acid from74863
68371ribitol-builds acid from15963
68371L-xylose-builds acid from65328
68371D-xylose-builds acid from65327
68371D-ribose-builds acid from16988
68371L-arabinose-builds acid from30849
68371D-arabinose-builds acid from17108
68371erythritol-builds acid from17113
68371glycerol-builds acid from17754
34787citrate+carbon source16947
34787esculin-hydrolysis4853
34787nitrate+reduction17632
34787nitrite+reduction16301
34787phenol+degradation15882
34787nitrate+respiration17632

antibiotic resistance

  • @ref: 34787
  • metabolite: 0129 (2,4-Diamino-6,7-di-iso-propylpteridine phosphate)
  • is antibiotic: yes
  • is sensitive: no
  • is resistant: yes

metabolite production

  • @ref: 34787
  • Chebi-ID: 35581
  • metabolite: indole
  • production: no

enzymes

@refvalueactivityec
34787oxidase+
34787beta-galactosidase-3.2.1.23
34787alcohol dehydrogenase+1.1.1.1
34787gelatinase+
34787amylase-
34787DNase-
34787caseinase+3.4.21.50
34787catalase+1.11.1.6
34787tween esterase+
34787lecithinase+
34787lipase+
34787lysine decarboxylase-4.1.1.18
34787ornithine decarboxylase-4.1.1.17
34787tryptophan deaminase-
34787urease-3.5.1.5
68382alkaline phosphatase+3.1.3.1
68382esterase (C 4)+
68382esterase lipase (C 8)+
68382lipase (C 14)+
68382leucine arylamidase+3.4.11.1
68382valine arylamidase-
68382cystine arylamidase-3.4.11.3
68382trypsin+3.4.21.4
68382alpha-chymotrypsin-3.4.21.1
68382acid phosphatase+3.1.3.2
68382naphthol-AS-BI-phosphohydrolase+
68382alpha-galactosidase-3.2.1.22
68382beta-galactosidase-3.2.1.23
68382beta-glucuronidase-3.2.1.31
68382alpha-glucosidase-3.2.1.20
68382beta-glucosidase-3.2.1.21
68382N-acetyl-beta-glucosaminidase-3.2.1.52
68382alpha-mannosidase-3.2.1.24
68382alpha-fucosidase-3.2.1.51

API zym

@refControlAlkaline phosphataseEsteraseEsterase LipaseLipaseLeucine arylamidaseValine arylamidaseCystine arylamidaseTrypsinalpha- ChymotrypsinAcid phosphataseNaphthol-AS-BI-phosphohydrolasealpha- Galactosidasebeta- Galactosidasebeta- Glucuronidasealpha- Glucosidasebeta- GlucosidaseN-acetyl-beta- glucosaminidasealpha- Mannosidasealpha- Fucosidase
34787-+++++--+-++--------

API 50CHac

@refGLYERYDARALARARIBDXYLLXYLADOMDXGALGLUFRUMNESBERHADULINOMANSORMDMMDGNAGAMYARBESCSALCELMALLACMELSACTREINUMLZRAFAMDGLYGXLTGENTURLYXTAGDFUCLFUCDARLLARLGNT2KG5KG
34787-------------------------------------------------

API biotype100

@refGLUFRUGALTREMNESBEMELSACRAFMTEMALLACLTEMbGaMaGaCELGENMbGuESCRIBARAXYLPLERHAFUCMLZDARLLARLXLTDULTAGGLYINOMANMTLTURSORADOHBGLYXERYMDG3MDGSATMUCLTATDTATMTATDMLTLMLTCATETATETTECITGRTGAT2KG5KGTRYNAGGNTPACPATpOBEQATGTEmOBEBATPPATCMTTGEBETPCEABTHINLATCAPCYTHISSUCFUMGREGYTAVTETNTTNGLNITA3OBUAPTGTTPRODALALALASERMNTPROPTYR2KT
34787++-----------------+------+----+-+--------------+++--+--+--++-++++-+---++++++++++++++--++++++++++++

Isolation, sampling and environmental information

isolation

  • @ref: 34787
  • sample type: Unknown source

Safety information

risk assessment

  • @ref: 34787
  • biosafety level: 2
  • biosafety level comment: Risk group (French classification)

Sequence information

Genome sequences

@refdescriptionaccessionassembly leveldatabaseNCBI tax ID
66792Pseudomonas aeruginosa NCTC11445GCA_900636735completencbi287
66792Pseudomonas aeruginosa ATCC 33353GCA_001444755contigncbi287
66792Pseudomonas aeruginosa strain ATCC 33353287.1983wgspatric287
66792Pseudomonas aeruginosa strain NCTC11445287.8052completepatric287
66792Pseudomonas aeruginosa ATCC 333532671180558draftimg287
66792Pseudomonas aeruginosa sv. Serotype 7 NCTC114452908492839completeimg287

Genome-based predictions

predictions

traitpredictionconfidencetraining_data
spore-formingno100no
flagellatedyes87.925no
gram-positiveno98.543no
anaerobicno98.434no
aerobicyes92.757no
halophileno90.918no
spore-formingno92.926no
thermophileno99.816yes
glucose-utilyes90.373no
motileyes89.669no
glucose-fermentno90.277no

External links

@ref: 34787

culture collection no.: CIP 59.38, ATCC 33353, NCTC 11445

straininfo link

  • @ref: 92937
  • straininfo: 40456

Reference

@idauthorstitledoi/urlcatalogue
20215Parte, A.C., Sardà Carbasse, J., Meier-Kolthoff, J.P., Reimer, L.C. and Göker, M.List of Prokaryotic names with Standing in Nomenclature (LPSN) moves to the DSMZ10.1099/ijsem.0.004332
34787Curators of the CIPhttps://catalogue-crbip.pasteur.fr/fiche_catalogue.xhtml?crbip=CIP%2059.38Collection of Institut Pasteur (CIP 59.38)
66792Julia Koblitz, Joaquim Sardà, Lorenz Christian Reimer, Boyke Bunk, Jörg OvermannAutomatically annotated for the DiASPora project (Digital Approaches for the Synthesis of Poorly Accessible Biodiversity Information)https://diaspora-project.de/progress.html#genomes
68371Automatically annotated from API 50CH acid
68382Automatically annotated from API zym
69480Julia Koblitz, Joaquim Sardà, Lorenz Christian Reimer, Boyke Bunk, Jörg OvermannPredictions based on genome sequence made in the Diaspora project (Digital Approaches for the Synthesis of Poorly Accessible Biodiversity Information)https://diaspora-project.de/progress.html#genomes
69481Xiao-Yin To, René Mreches, Martin Binder, Alice C. McHardy, Philipp C. MünchPredictions based on the model GenomeNet Sporulation v. 110.21203/rs.3.rs-2527258/v1
92937Reimer, L.C., Lissin, A.,Schober, I., Witte,J.F., Podstawka, A., Lüken, H., Bunk, B.,Overmann, J.StrainInfo: A central database for resolving microbial strain identifiers10.60712/SI-ID40456.1