Strain identifier

BacDive ID: 135500

Type strain: Yes

Species: Helicobacter bizzozeronii

For citation purpose refer to the digital object identifier (doi) of the current version.
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General

@ref: 34635

BacDive-ID: 135500

keywords: genome sequence, Bacteria, microaerophile, mesophilic, motile

description: Helicobacter bizzozeronii CIP 105233 is a microaerophile, mesophilic, motile bacterium of the family Helicobacteraceae.

NCBI tax id

NCBI tax idMatching level
56877species
1002805strain

doi: 10.13145/bacdive135500.20230509.8.1

Name and taxonomic classification

LPSN

  • @ref: 20215
  • description: domain/bacteria
  • keyword: phylum/pseudomonadota
  • domain: Bacteria
  • phylum: Pseudomonadota
  • class: Epsilonproteobacteria
  • order: Campylobacterales
  • family: Helicobacteraceae
  • genus: Helicobacter
  • species: Helicobacter bizzozeronii
  • full scientific name: Helicobacter bizzozeronii Hänninen et al. 1996

@ref: 34635

domain: Bacteria

phylum: Proteobacteria

class: Epsilonproteobacteria

order: Campylobacterales

family: Helicobacteraceae

genus: Helicobacter

species: Helicobacter bizzozeronii

type strain: yes

Morphology

cell morphology

@refmotilityconfidencegram stain
69480yes91.68
6948099.973negative

colony morphology

  • @ref: 52477
  • incubation period: 2-3 days

Culture and growth conditions

culture medium

  • @ref: 34635
  • name: MEDIUM 250 - for Bartonella bacilliformis and Helicobacter bizzozeronii
  • growth: yes
  • composition: Distilled water make up to (1000.000 ml);Columbia agar (39.000 g);Sheepblood (300.000 ml)

culture temp

@refgrowthtypetemperaturerange
34635positivegrowth37mesophilic
52477positivegrowth37mesophilic

Physiology and metabolism

oxygen tolerance

  • @ref: 52477
  • oxygen tolerance: microaerophile

spore formation

@refspore formationconfidence
69481no100
69480no99.998

Isolation, sampling and environmental information

isolation

@refgeographic locationcountryorigin.countrycontinentsample type
34635HelsinkiFinlandFINEurope
52477HelsinkiFinlandFINEuropeCanine gastic mucosa

isolation source categories

Cat1Cat2Cat3
#Host Body-Site#Gastrointestinal tract#Stomach
#Host#Mammals

Sequence information

Genome sequences

@refdescriptionaccessionassembly leveldatabaseNCBI tax ID
66792Helicobacter bizzozeronii CIP 105233GCA_017979515contigncbi56877
66792Helicobacter bizzozeronii CCUG 355451002805.5wgspatric1002805
66792Helicobacter bizzozeronii strain CIP 10523356877.34wgspatric56877
66792Helicobacter bizzozeronii CCUG 355452534682345draftimg1002805
66792Helicobacter bizzozeronii CCUG 35545GCA_000263275contigncbi1002805

Genome-based predictions

predictions

traitpredictionconfidencetraining_data
spore-formingno100no
motileyes89.498no
flagellatedno62.684no
gram-positiveno99.133no
anaerobicno84.87yes
aerobicno96.774yes
halophileno87.9no
spore-formingno96.253no
thermophileno64.423yes
glucose-utilno76.933no
glucose-fermentno79.558no

External links

@ref: 34635

culture collection no.: CIP 105233, CCUG 35545, CCUG 35045

straininfo link

  • @ref: 92853
  • straininfo: 15852

Reference

@idauthorstitledoi/urlcataloguejournalpubmed
20215Parte, A.C., Sardà Carbasse, J., Meier-Kolthoff, J.P., Reimer, L.C. and Göker, M.List of Prokaryotic names with Standing in Nomenclature (LPSN) moves to the DSMZ10.1099/ijsem.0.004332
34635Curators of the CIPhttps://catalogue-crbip.pasteur.fr/fiche_catalogue.xhtml?crbip=CIP%20105233Collection of Institut Pasteur (CIP 105233)
52477Curators of the CCUGhttps://www.ccug.se/strain?id=35045Culture Collection University of Gothenburg (CCUG) (CCUG 35045)
66792Julia Koblitz, Joaquim Sardà, Lorenz Christian Reimer, Boyke Bunk, Jörg OvermannAutomatically annotated for the DiASPora project (Digital Approaches for the Synthesis of Poorly Accessible Biodiversity Information)https://diaspora-project.de/progress.html#genomes
66794Antje Chang, Lisa Jeske, Sandra Ulbrich, Julia Hofmann, Julia Koblitz, Ida Schomburg, Meina Neumann-Schaal, Dieter Jahn, Dietmar SchomburgBRENDA, the ELIXIR core data resource in 2021: new developments and updates10.1093/nar/gkaa1025Nucleic Acids Res. 49: D498-D508 202033211880
69480Julia Koblitz, Joaquim Sardà, Lorenz Christian Reimer, Boyke Bunk, Jörg OvermannPredictions based on genome sequence made in the Diaspora project (Digital Approaches for the Synthesis of Poorly Accessible Biodiversity Information)https://diaspora-project.de/progress.html#genomes
69481Xiao-Yin To, René Mreches, Martin Binder, Alice C. McHardy, Philipp C. MünchPredictions based on the model GenomeNet Sporulation v. 110.21203/rs.3.rs-2527258/v1
92853Reimer, L.C., Lissin, A.,Schober, I., Witte,J.F., Podstawka, A., Lüken, H., Bunk, B.,Overmann, J.StrainInfo: A central database for resolving microbial strain identifiers10.60712/SI-ID15852.1