Strain identifier
BacDive ID: 135500
Type strain:
Species: Helicobacter bizzozeronii
NCBI tax ID(s): 1002805 (strain), 56877 (species)
version 8.1 (current version)
General
@ref: 34635
BacDive-ID: 135500
keywords: genome sequence, Bacteria, microaerophile, mesophilic, motile
description: Helicobacter bizzozeronii CIP 105233 is a microaerophile, mesophilic, motile bacterium of the family Helicobacteraceae.
NCBI tax id
NCBI tax id | Matching level |
---|---|
56877 | species |
1002805 | strain |
doi: 10.13145/bacdive135500.20230509.8.1
Name and taxonomic classification
LPSN
- @ref: 20215
- description: domain/bacteria
- keyword: phylum/pseudomonadota
- domain: Bacteria
- phylum: Pseudomonadota
- class: Epsilonproteobacteria
- order: Campylobacterales
- family: Helicobacteraceae
- genus: Helicobacter
- species: Helicobacter bizzozeronii
- full scientific name: Helicobacter bizzozeronii Hänninen et al. 1996
@ref: 34635
domain: Bacteria
phylum: Proteobacteria
class: Epsilonproteobacteria
order: Campylobacterales
family: Helicobacteraceae
genus: Helicobacter
species: Helicobacter bizzozeronii
type strain: yes
Morphology
cell morphology
@ref | motility | confidence | gram stain |
---|---|---|---|
69480 | yes | 91.68 | |
69480 | 99.973 | negative |
colony morphology
- @ref: 52477
- incubation period: 2-3 days
Culture and growth conditions
culture medium
- @ref: 34635
- name: MEDIUM 250 - for Bartonella bacilliformis and Helicobacter bizzozeronii
- growth: yes
- composition: Distilled water make up to (1000.000 ml);Columbia agar (39.000 g);Sheepblood (300.000 ml)
culture temp
@ref | growth | type | temperature | range |
---|---|---|---|---|
34635 | positive | growth | 37 | mesophilic |
52477 | positive | growth | 37 | mesophilic |
Physiology and metabolism
oxygen tolerance
- @ref: 52477
- oxygen tolerance: microaerophile
spore formation
@ref | spore formation | confidence |
---|---|---|
69481 | no | 100 |
69480 | no | 99.998 |
Isolation, sampling and environmental information
isolation
@ref | geographic location | country | origin.country | continent | sample type |
---|---|---|---|---|---|
34635 | Helsinki | Finland | FIN | Europe | |
52477 | Helsinki | Finland | FIN | Europe | Canine gastic mucosa |
isolation source categories
Cat1 | Cat2 | Cat3 |
---|---|---|
#Host Body-Site | #Gastrointestinal tract | #Stomach |
#Host | #Mammals |
Sequence information
Genome sequences
@ref | description | accession | assembly level | database | NCBI tax ID |
---|---|---|---|---|---|
66792 | Helicobacter bizzozeronii CIP 105233 | GCA_017979515 | contig | ncbi | 56877 |
66792 | Helicobacter bizzozeronii CCUG 35545 | 1002805.5 | wgs | patric | 1002805 |
66792 | Helicobacter bizzozeronii strain CIP 105233 | 56877.34 | wgs | patric | 56877 |
66792 | Helicobacter bizzozeronii CCUG 35545 | 2534682345 | draft | img | 1002805 |
66792 | Helicobacter bizzozeronii CCUG 35545 | GCA_000263275 | contig | ncbi | 1002805 |
Genome-based predictions
predictions
trait | prediction | confidence | training_data |
---|---|---|---|
spore-forming | no | 100 | no |
motile | yes | 89.498 | no |
flagellated | no | 62.684 | no |
gram-positive | no | 99.133 | no |
anaerobic | no | 84.87 | yes |
aerobic | no | 96.774 | yes |
halophile | no | 87.9 | no |
spore-forming | no | 96.253 | no |
thermophile | no | 64.423 | yes |
glucose-util | no | 76.933 | no |
glucose-ferment | no | 79.558 | no |
External links
@ref: 34635
culture collection no.: CIP 105233, CCUG 35545, CCUG 35045
straininfo link
- @ref: 92853
- straininfo: 15852
Reference
@id | authors | title | doi/url | catalogue | journal | pubmed |
---|---|---|---|---|---|---|
20215 | Parte, A.C., Sardà Carbasse, J., Meier-Kolthoff, J.P., Reimer, L.C. and Göker, M. | List of Prokaryotic names with Standing in Nomenclature (LPSN) moves to the DSMZ | 10.1099/ijsem.0.004332 | |||
34635 | Curators of the CIP | https://catalogue-crbip.pasteur.fr/fiche_catalogue.xhtml?crbip=CIP%20105233 | Collection of Institut Pasteur (CIP 105233) | |||
52477 | Curators of the CCUG | https://www.ccug.se/strain?id=35045 | Culture Collection University of Gothenburg (CCUG) (CCUG 35045) | |||
66792 | Julia Koblitz, Joaquim Sardà, Lorenz Christian Reimer, Boyke Bunk, Jörg Overmann | Automatically annotated for the DiASPora project (Digital Approaches for the Synthesis of Poorly Accessible Biodiversity Information) | https://diaspora-project.de/progress.html#genomes | |||
66794 | Antje Chang, Lisa Jeske, Sandra Ulbrich, Julia Hofmann, Julia Koblitz, Ida Schomburg, Meina Neumann-Schaal, Dieter Jahn, Dietmar Schomburg | BRENDA, the ELIXIR core data resource in 2021: new developments and updates | 10.1093/nar/gkaa1025 | Nucleic Acids Res. 49: D498-D508 2020 | 33211880 | |
69480 | Julia Koblitz, Joaquim Sardà, Lorenz Christian Reimer, Boyke Bunk, Jörg Overmann | Predictions based on genome sequence made in the Diaspora project (Digital Approaches for the Synthesis of Poorly Accessible Biodiversity Information) | https://diaspora-project.de/progress.html#genomes | |||
69481 | Xiao-Yin To, René Mreches, Martin Binder, Alice C. McHardy, Philipp C. Münch | Predictions based on the model GenomeNet Sporulation v. 1 | 10.21203/rs.3.rs-2527258/v1 | |||
92853 | Reimer, L.C., Lissin, A.,Schober, I., Witte,J.F., Podstawka, A., Lüken, H., Bunk, B.,Overmann, J. | StrainInfo: A central database for resolving microbial strain identifiers | 10.60712/SI-ID15852.1 |