Strain identifier
BacDive ID: 13539
Type strain: 
Species: Agrobacterium luteum
Strain Designation: A61
Strain history: IAM 12619 <-- ATCC 25657 <-- R. Ahrens A61.
NCBI tax ID(s): 285944 (species)
General
@ref: 2347
BacDive-ID: 13539
DSM-Number: 5889
keywords: 16S sequence, mesophilic
description: Agrobacterium luteum A61 is a mesophilic Proteobacterium that was isolated from brackish water.
NCBI tax id
- NCBI tax id: 285944
- Matching level: species
strain history
| @ref | history |
|---|---|
| 2347 | <- ATCC <- R. Ahrens, A61. Shows a high degree of 16S rRNA gene sequence similarity to Sphingorhabdus flavimaris |
| 67770 | IAM 12619 <-- ATCC 25657 <-- R. Ahrens A61. |
doi: 10.13145/bacdive13539.20230509.8.1
Name and taxonomic classification
@ref: 2347
domain: Bacteria
phylum: Proteobacteria
class: Alphaproteobacteria
order: Rhizobiales
family: Rhizobiaceae
genus: Agrobacterium
species: Agrobacterium luteum
full scientific name: Agrobacterium luteum
strain designation: A61
type strain: yes
Culture and growth conditions
culture medium
- @ref: 2347
- name: MARINE AGAR (DSMZ Medium 123)
- growth: yes
- link: https://mediadive.dsmz.de/medium/123
- composition: Name: MARINE AGAR (DSMZ Medium 123) Composition: NaCl 24.0 g/l Agar 15.0 g/l MgCl2 x 6 H2O 11.0 g/l Bacto peptone 5.0 g/l Na2SO4 4.0 g/l CaCl2 x 6 H2O 2.0 g/l Yeast extract 1.0 g/l KCl 0.7 g/l KBr 0.1 g/l SrCl2 x 6 H2O 0.04 g/l H3BO3 0.03 g/l NaSiO3 x 9 H2O 0.005 g/l NaF 0.003 g/l NH4NO3 0.002 g/l Fe(III)PO4 x 4 H2O 0.001 g/l Distilled water
culture temp
| @ref | growth | type | temperature | range |
|---|---|---|---|---|
| 2347 | positive | growth | 26 | mesophilic |
| 67770 | positive | growth | 25 | mesophilic |
Isolation, sampling and environmental information
isolation
| @ref | sample type | geographic location |
|---|---|---|
| 2347 | brackish water | Baltic Sea |
| 67770 | Brackish water | Baltic Sea |
isolation source categories
- Cat1: #Environmental
- Cat2: #Aquatic
- Cat3: #Brackish
taxonmaps
- @ref: 69479
- File name: preview.99_6261.png
- url: https://microbeatlas.org/index.html?action=taxon&taxon_id=90_20;96_1750;97_2092;98_4640;99_6261&stattab=map
- Last taxonomy: Sphingomonadaceae
- 16S sequence: AB680964
- Sequence Identity:
- Total samples: 7031
- soil counts: 436
- aquatic counts: 6142
- animal counts: 308
- plant counts: 145
Sequence information
16S sequences
- @ref: 20218
- description: Agrobacterium luteum gene for 16S rRNA, partial sequence, strain: NBRC 15768
- accession: AB680964
- length: 1414
- database: ena
- NCBI tax ID: 285944
External links
@ref: 2347
culture collection no.: DSM 5889, ATCC 25657, JCM 20690, CECT 4359, IAM 12619, IFO 15768, LMG 135, NBRC 15768, NCIMB 1538
Reference
| @id | authors | catalogue | doi/url | title | journal | pubmed |
|---|---|---|---|---|---|---|
| 2347 | Curators of the DSMZ | Leibniz Institut DSMZ-Deutsche Sammlung von Mikroorganismen und Zellkulturen GmbH (DSM 5889) | https://www.dsmz.de/collection/catalogue/details/culture/DSM-5889 | |||
| 20218 | Verslyppe, B., De Smet, W., De Baets, B., De Vos, P., Dawyndt P. | 10.1016/j.syapm.2013.11.002 | StrainInfo introduces electronic passports for microorganisms. | Syst Appl Microbiol. 37: 42-50 2014 | 24321274 | |
| 67770 | Curators of the JCM | https://jcm.brc.riken.jp/en/ | ||||
| 69479 | João F Matias Rodrigues, Janko Tackmann,Gregor Rot, Thomas SB Schmidt, Lukas Malfertheiner, Mihai Danaila,Marija Dmitrijeva, Daniela Gaio, Nicolas Näpflin and Christian von Mering. University of Zurich. | https://microbeatlas.org/ | MicrobeAtlas 1.0 beta |