Strain identifier

BacDive ID: 135349

Type strain: No

Species: Mycobacterium avium subsp. paratuberculosis

Strain Designation: JC31

Strain history: CIP <- 1994, ATCC <- NCTC, Mycobacterium johnei <- H.W. Smith: strain JC31

NCBI tax ID(s): 1770 (subspecies)

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General

@ref: 34445

BacDive-ID: 135349

keywords: Bacteria, mesophilic, rod-shaped

description: Mycobacterium avium subsp. paratuberculosis JC31 is a mesophilic, rod-shaped bacterium that was isolated from Human, With Johne's disease.

NCBI tax id

  • NCBI tax id: 1770
  • Matching level: subspecies

strain history

  • @ref: 34445
  • history: CIP <- 1994, ATCC <- NCTC, Mycobacterium johnei <- H.W. Smith: strain JC31

doi: 10.13145/bacdive135349.20230509.8.1

Name and taxonomic classification

LPSN

  • @ref: 20215
  • description: domain/bacteria
  • keyword: phylum/actinomycetota
  • domain: Bacteria
  • phylum: Actinomycetota
  • class: Actinomycetes
  • order: Mycobacteriales
  • family: Mycobacteriaceae
  • genus: Mycobacterium
  • species: Mycobacterium avium subsp. paratuberculosis
  • full scientific name: Mycobacterium avium subsp. paratuberculosis (Bergey et al. 1923) Thorel et al. 1990

  • synonyms

    • @ref: 20215
    • synonym: Mycobacterium paratuberculosis

@ref: 34445

domain: Bacteria

phylum: Actinobacteria

class: Actinobacteria

order: Mycobacteriales

family: Mycobacteriaceae

genus: Mycobacterium

species: Mycobacterium avium subsp. paratuberculosis

strain designation: JC31

type strain: no

Morphology

cell morphology

  • @ref: 34445
  • cell shape: rod-shaped
  • motility: no

Culture and growth conditions

culture medium

@refnamegrowthcompositionlink
34445MEDIUM 96 - for Mycobacterium avium subsp. paratuberculosisyesTween 80 (0.500 ml);Middlebrook 7H9 broth (4.700 g);Middelbrook OADC enrichment (100.000 ml);Distilled water (900.000 ml);Mycobactine (2.000 ml)
34445CIP Medium 96yeshttps://catalogue-crbip.pasteur.fr/fiche_milieu.xhtml?crbip=96

culture temp

@refgrowthtypetemperaturerange
34445positivegrowth37mesophilic
34445positivegrowth30-37mesophilic
34445nogrowth10psychrophilic
34445nogrowth22psychrophilic
34445nogrowth45thermophilic

Physiology and metabolism

metabolite utilization

@refChebi-IDmetaboliteutilization activitykind of utilization tested
34445606565hippurate-hydrolysis
3444517632nitrate-reduction
3444516301nitrite-reduction

metabolite production

  • @ref: 34445
  • Chebi-ID: 35581
  • metabolite: indole
  • production: no

enzymes

@refvalueactivityec
34445oxidase-
34445beta-galactosidase-3.2.1.23
34445gelatinase-
34445catalase+1.11.1.6
34445gamma-glutamyltransferase+2.3.2.2
34445urease-3.5.1.5
68382alkaline phosphatase-3.1.3.1
68382esterase (C 4)+
68382esterase lipase (C 8)+
68382lipase (C 14)-
68382leucine arylamidase+3.4.11.1
68382valine arylamidase-
68382cystine arylamidase-3.4.11.3
68382trypsin-3.4.21.4
68382alpha-chymotrypsin-3.4.21.1
68382acid phosphatase-3.1.3.2
68382naphthol-AS-BI-phosphohydrolase+
68382alpha-galactosidase-3.2.1.22
68382beta-galactosidase-3.2.1.23
68382beta-glucuronidase-3.2.1.31
68382alpha-glucosidase-3.2.1.20
68382beta-glucosidase-3.2.1.21
68382N-acetyl-beta-glucosaminidase-3.2.1.52
68382alpha-mannosidase-3.2.1.24
68382alpha-fucosidase-3.2.1.51

API zym

@refControlAlkaline phosphataseEsteraseEsterase LipaseLipaseLeucine arylamidaseValine arylamidaseCystine arylamidaseTrypsinalpha- ChymotrypsinAcid phosphataseNaphthol-AS-BI-phosphohydrolasealpha- Galactosidasebeta- Galactosidasebeta- Glucuronidasealpha- Glucosidasebeta- GlucosidaseN-acetyl-beta- glucosaminidasealpha- Mannosidasealpha- Fucosidase
34445--++-+-----+--------

Isolation, sampling and environmental information

isolation

  • @ref: 34445
  • sample type: Human, With Johne's disease

Safety information

risk assessment

  • @ref: 34445
  • biosafety level: 2
  • biosafety level comment: Risk group (French classification)

External links

@ref: 34445

culture collection no.: CIP 103964, ATCC 19851, NCTC 8578

straininfo link

  • @ref: 92723
  • straininfo: 37132

literature

topicPubmed-IDtitleauthorsjournalDOIyearmeshtopic2
Stress10389265Effect of higher pasteurization temperatures, and longer holding times at 72 degrees C, on the inactivation of Mycobacterium paratuberculosis in milk.Grant IR, Ball HJ, Rowe MTLett Appl Microbiol10.1046/j.1365-2672.1999.00557.x1999Animals, Cattle, Colony Count, Microbial, Disinfection, *Hot Temperature, Milk/*microbiology, Mycobacterium avium subsp. paratuberculosis/*growth & development, Time Factors
Pathogenicity11555209Bactericidal effect of chlorine on Mycobacterium paratuberculosis in drinking water.Whan LB, Grant IR, Ball HJ, Scott R, Rowe MTLett Appl Microbiol10.1046/j.1472-765x.2001.00987.x2001Chlorine/*pharmacology, Colony Count, Microbial, Dose-Response Relationship, Drug, Mycobacterium avium subsp. paratuberculosis/*drug effects/growth & development, Serum Albumin, Bovine/pharmacology, Time Factors, *Water Microbiology, *Water Supply
Phylogeny14665738Iodixanol development of a laboratory-scale technique to monitor the persistence of Mycobacterium avium subsp. paratuberculosis in Cheddar cheese.Donaghy JA, Totton NL, Rowe MTScientificWorldJournal10.1100/tsw.2003.1092003Cheese/analysis/*microbiology, Food Microbiology, Humans, Mycobacterium avium/classification/growth & development/*isolation & purification, Mycobacterium avium subsp. paratuberculosis/classification/growth & development/*isolation & purification, *Triiodobenzoic AcidsBiotechnology
Phylogeny15214726Effect of chemical decontamination and refrigerated storage on the isolation of Mycobacterium avium subsp. paratuberculosis from heat-treated milk.Grant IR, Rowe MTLett Appl Microbiol10.1111/j.1472-765x.2004.01498.x2004Animals, Anti-Infective Agents, Local/pharmacology, Cetylpyridinium/pharmacology, Disinfection/*methods, Food Microbiology, *Hot Temperature, Milk/*microbiology, Mycobacterium avium subsp. paratuberculosis/growth & development/*isolation & purification, *RefrigerationBiotechnology
Cultivation15294829Persistence of Mycobacterium paratuberculosis during manufacture and ripening of cheddar cheese.Donaghy JA, Totton NL, Rowe MTAppl Environ Microbiol10.1128/AEM.70.8.4899-4905.20042004Animals, Cheese/analysis/*microbiology, Colony Count, Microbial, Culture Media, Fermentation, *Food Contamination, Food Handling/*methods, Milk/*microbiology, Mycobacterium avium subsp. paratuberculosis/*growth & development
Pathogenicity16839422Interaction between Mycobacterium avium subsp. paratuberculosis and environmental protozoa.Whan L, Grant IR, Rowe MTBMC Microbiol10.1186/1471-2180-6-632006Acanthamoeba/growth & development/*microbiology, Acanthamoeba castellanii/growth & development/*microbiology, Animals, Chlorine/*pharmacology, Coculture Techniques, *Drug Resistance, Bacterial, Microscopy, Electron, Mycobacterium avium subsp. paratuberculosis/*drug effects/*growth & development, Water/parasitology, Water Microbiology
Enzymology18676709Antibacterial activities of naturally occurring compounds against Mycobacterium avium subsp. paratuberculosis.Wong SY, Grant IR, Friedman M, Elliott CT, Situ CAppl Environ Microbiol10.1128/AEM.00981-082008Animals, Antitubercular Agents/chemistry/*isolation & purification/*pharmacology, Biomass, Cattle, Colony Count, Microbial, Culture Media/chemistry, Humans, Microbial Sensitivity Tests, Molecular Structure, Mycobacterium avium subsp. paratuberculosis/*drug effects/growth & development/isolation & purification, Plant Extracts/chemistry/*isolation & purification/*pharmacology, SpectrophotometryPhylogeny

Reference

@idauthorstitledoi/urlcatalogue
20215Parte, A.C., Sardà Carbasse, J., Meier-Kolthoff, J.P., Reimer, L.C. and Göker, M.List of Prokaryotic names with Standing in Nomenclature (LPSN) moves to the DSMZ10.1099/ijsem.0.004332
34445Curators of the CIPhttps://catalogue-crbip.pasteur.fr/fiche_catalogue.xhtml?crbip=CIP%20103964Collection of Institut Pasteur (CIP 103964)
68382Automatically annotated from API zym
92723Reimer, L.C., Lissin, A.,Schober, I., Witte,J.F., Podstawka, A., Lüken, H., Bunk, B.,Overmann, J.StrainInfo: A central database for resolving microbial strain identifiers10.60712/SI-ID37132.1