Strain identifier

BacDive ID: 13532

Type strain: No

Species: Agrobacterium sp.

Strain Designation: S2

Strain history: <- B.J. Feigel, S2

NCBI tax ID(s): 361 (species)

For citation purpose refer to the digital object identifier (doi) of the current version.
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General

@ref: 2278

BacDive-ID: 13532

DSM-Number: 5681

keywords: genome sequence, Bacteria, mesophilic

description: Agrobacterium sp. S2 is a mesophilic bacterium that was isolated from air.

NCBI tax id

  • NCBI tax id: 361
  • Matching level: species

strain history

  • @ref: 2278
  • history: <- B.J. Feigel, S2

doi: 10.13145/bacdive13532.20230509.8.1

Name and taxonomic classification

LPSN

  • @ref: 20215
  • description: domain/bacteria
  • keyword: phylum/pseudomonadota
  • domain: Bacteria
  • phylum: Pseudomonadota
  • class: Alphaproteobacteria
  • order: Hyphomicrobiales
  • family: Rhizobiaceae
  • genus: Agrobacterium
  • species: Agrobacterium sp.
  • full scientific name: Agrobacterium Conn 1942 (Approved Lists 1980)

@ref: 2278

domain: Bacteria

phylum: Proteobacteria

class: Alphaproteobacteria

order: Rhizobiales

family: Rhizobiaceae

genus: Agrobacterium

species: Agrobacterium sp.

full scientific name: Agrobacterium sp.

strain designation: S2

type strain: no

Culture and growth conditions

culture medium

  • @ref: 2278
  • name: NUTRIENT AGAR (DSMZ Medium 1)
  • growth: yes
  • link: https://mediadive.dsmz.de/medium/1
  • composition: Name: NUTRIENT AGAR (DSMZ Medium 1) Composition: Agar 15.0 g/l Peptone 5.0 g/l Meat extract 3.0 g/l Distilled water

culture temp

  • @ref: 2278
  • growth: positive
  • type: growth
  • temperature: 28
  • range: mesophilic

Isolation, sampling and environmental information

isolation

  • @ref: 2278
  • sample type: air
  • geographic location: Bonn
  • country: Germany
  • origin.country: DEU
  • continent: Europe

isolation source categories

  • Cat1: #Environmental
  • Cat2: #Air

Sequence information

Genome sequences

@refdescriptionaccessionassembly leveldatabaseNCBI tax ID
66792Agrobacterium sp. S2GCA_016906285contigncbi2810068
66792Agrobacterium sp. S22810068.3wgspatric2810068

Genome-based predictions

predictions

traitpredictionconfidencetraining_data
motileyes86.454no
gram-positiveno98.381no
anaerobicno95.667no
halophileno95.456no
spore-formingno96.175no
glucose-utilyes91.398no
flagellatedno76.531no
aerobicyes90.909no
thermophileno99.792yes
glucose-fermentno89.053no

External links

@ref: 2278

culture collection no.: DSM 5681

straininfo link

  • @ref: 82723
  • straininfo: 47979

Reference

@idauthorscataloguedoi/urltitle
2278Curators of the DSMZLeibniz Institut DSMZ-Deutsche Sammlung von Mikroorganismen und Zellkulturen GmbH (DSM 5681)https://www.dsmz.de/collection/catalogue/details/culture/DSM-5681
20215Parte, A.C., Sardà Carbasse, J., Meier-Kolthoff, J.P., Reimer, L.C. and Göker, M.10.1099/ijsem.0.004332List of Prokaryotic names with Standing in Nomenclature (LPSN) moves to the DSMZ
66792Julia Koblitz, Joaquim Sardà, Lorenz Christian Reimer, Boyke Bunk, Jörg Overmannhttps://diaspora-project.de/progress.html#genomesAutomatically annotated for the DiASPora project (Digital Approaches for the Synthesis of Poorly Accessible Biodiversity Information)
82723Reimer, L.C., Lissin, A.,Schober, I., Witte,J.F., Podstawka, A., Lüken, H., Bunk, B.,Overmann, J.10.60712/SI-ID47979.1StrainInfo: A central database for resolving microbial strain identifiers