Strain identifier
BacDive ID: 13532
Type strain:
Species: Agrobacterium sp.
Strain Designation: S2
Strain history: <- B.J. Feigel, S2
NCBI tax ID(s): 361 (species)
version 8.1 (current version)
General
@ref: 2278
BacDive-ID: 13532
DSM-Number: 5681
keywords: genome sequence, Bacteria, mesophilic
description: Agrobacterium sp. S2 is a mesophilic bacterium that was isolated from air.
NCBI tax id
- NCBI tax id: 361
- Matching level: species
strain history
- @ref: 2278
- history: <- B.J. Feigel, S2
doi: 10.13145/bacdive13532.20230509.8.1
Name and taxonomic classification
LPSN
- @ref: 20215
- description: domain/bacteria
- keyword: phylum/pseudomonadota
- domain: Bacteria
- phylum: Pseudomonadota
- class: Alphaproteobacteria
- order: Hyphomicrobiales
- family: Rhizobiaceae
- genus: Agrobacterium
- species: Agrobacterium sp.
- full scientific name: Agrobacterium Conn 1942 (Approved Lists 1980)
@ref: 2278
domain: Bacteria
phylum: Proteobacteria
class: Alphaproteobacteria
order: Rhizobiales
family: Rhizobiaceae
genus: Agrobacterium
species: Agrobacterium sp.
full scientific name: Agrobacterium sp.
strain designation: S2
type strain: no
Culture and growth conditions
culture medium
- @ref: 2278
- name: NUTRIENT AGAR (DSMZ Medium 1)
- growth: yes
- link: https://mediadive.dsmz.de/medium/1
- composition: Name: NUTRIENT AGAR (DSMZ Medium 1) Composition: Agar 15.0 g/l Peptone 5.0 g/l Meat extract 3.0 g/l Distilled water
culture temp
- @ref: 2278
- growth: positive
- type: growth
- temperature: 28
- range: mesophilic
Isolation, sampling and environmental information
isolation
- @ref: 2278
- sample type: air
- geographic location: Bonn
- country: Germany
- origin.country: DEU
- continent: Europe
isolation source categories
- Cat1: #Environmental
- Cat2: #Air
Sequence information
Genome sequences
@ref | description | accession | assembly level | database | NCBI tax ID |
---|---|---|---|---|---|
66792 | Agrobacterium sp. S2 | GCA_016906285 | contig | ncbi | 2810068 |
66792 | Agrobacterium sp. S2 | 2810068.3 | wgs | patric | 2810068 |
Genome-based predictions
predictions
trait | prediction | confidence | training_data |
---|---|---|---|
motile | yes | 86.454 | no |
gram-positive | no | 98.381 | no |
anaerobic | no | 95.667 | no |
halophile | no | 95.456 | no |
spore-forming | no | 96.175 | no |
glucose-util | yes | 91.398 | no |
flagellated | no | 76.531 | no |
aerobic | yes | 90.909 | no |
thermophile | no | 99.792 | yes |
glucose-ferment | no | 89.053 | no |
External links
@ref: 2278
culture collection no.: DSM 5681
straininfo link
- @ref: 82723
- straininfo: 47979
Reference
@id | authors | catalogue | doi/url | title |
---|---|---|---|---|
2278 | Curators of the DSMZ | Leibniz Institut DSMZ-Deutsche Sammlung von Mikroorganismen und Zellkulturen GmbH (DSM 5681) | https://www.dsmz.de/collection/catalogue/details/culture/DSM-5681 | |
20215 | Parte, A.C., Sardà Carbasse, J., Meier-Kolthoff, J.P., Reimer, L.C. and Göker, M. | 10.1099/ijsem.0.004332 | List of Prokaryotic names with Standing in Nomenclature (LPSN) moves to the DSMZ | |
66792 | Julia Koblitz, Joaquim Sardà, Lorenz Christian Reimer, Boyke Bunk, Jörg Overmann | https://diaspora-project.de/progress.html#genomes | Automatically annotated for the DiASPora project (Digital Approaches for the Synthesis of Poorly Accessible Biodiversity Information) | |
82723 | Reimer, L.C., Lissin, A.,Schober, I., Witte,J.F., Podstawka, A., Lüken, H., Bunk, B.,Overmann, J. | 10.60712/SI-ID47979.1 | StrainInfo: A central database for resolving microbial strain identifiers |