Strain identifier
BacDive ID: 13530
Type strain: 
Species: Rarobacter faecitabidus
Strain Designation: YLM-11
Strain history: S. Sato YLM-11.
NCBI tax ID(s): 13243 (species)
version 8.1 (current version)
General
@ref: 1839
BacDive-ID: 13530
DSM-Number: 4814
keywords: 16S sequence, Bacteria, mesophilic
description: Rarobacter faecitabidus YLM-11 is a mesophilic bacterium that was isolated from waste water treatment system.
NCBI tax id
- NCBI tax id: 13243
- Matching level: species
strain history
| @ref | history |
|---|---|
| 1839 | <- JCM <- S. Sato, YLM-11 |
| 67770 | S. Sato YLM-11. |
doi: 10.13145/bacdive13530.20230509.8.1
Name and taxonomic classification
LPSN
- @ref: 20215
- description: domain/bacteria
- keyword: phylum/actinomycetota
- domain: Bacteria
- phylum: Actinomycetota
- class: Actinomycetes
- order: Micrococcales
- family: Rarobacteraceae
- genus: Rarobacter
- species: Rarobacter faecitabidus
- full scientific name: Rarobacter faecitabidus Yamamoto et al. 1988
@ref: 1839
domain: Bacteria
phylum: Actinobacteria
class: Actinobacteria
order: Actinomycetales
family: Rarobacteraceae
genus: Rarobacter
species: Rarobacter faecitabidus
full scientific name: Rarobacter faecitabidus Yamamoto et al. 1988
strain designation: YLM-11
type strain: no
Culture and growth conditions
culture medium
- @ref: 1839
- name: YM-CATALASE MEDIUM (DSMZ Medium 469)
- growth: yes
- link: https://mediadive.dsmz.de/medium/469
- composition: Name: YM-CATALASE MEDIUM (DSMZ Medium 469) Composition: K2HPO4 5.7 g/l Malt extract 5.0 g/l Yeast extract 5.0 g/l NH4H2PO4 1.2 g/l MgSO4 x 7 H2O 0.2 g/l Catalase 0.06 g/l Distilled water
culture temp
| @ref | growth | type | temperature | range |
|---|---|---|---|---|
| 1839 | positive | growth | 30 | mesophilic |
| 67770 | positive | growth | 30 | mesophilic |
Physiology and metabolism
observation
- @ref: 67770
- observation: quinones: MK-9
Isolation, sampling and environmental information
isolation
| @ref | sample type | country | origin.country | continent |
|---|---|---|---|---|
| 1839 | waste water treatment system | Japan | JPN | Asia |
| 67770 | Activated sludge from a wastewater treatment system of an alcoholic beverage factory |
isolation source categories
| Cat1 | Cat2 | Cat3 |
|---|---|---|
| #Engineered | #Waste | #Wastewater |
| #Engineered | #Waste | #Water treatment plant |
taxonmaps
- @ref: 69479
- File name: preview.99_80705.png
- url: https://microbeatlas.org/index.html?action=taxon&taxon_id=90_9;96_33890;97_42977;98_56165;99_80705&stattab=map
- Last taxonomy: Rarobacter faecitabidus subclade
- 16S sequence: AB056128
- Sequence Identity:
- Total samples: 1102
- soil counts: 315
- aquatic counts: 227
- animal counts: 505
- plant counts: 55
Safety information
risk assessment
- @ref: 1839
- biosafety level: 1
- biosafety level comment: Risk group (German classification)
Sequence information
16S sequences
- @ref: 67770
- description: Rarobacter faecitabidus gene for 16S rRNA, partial sequence, strain:IFO 15223
- accession: AB056128
- length: 1503
- database: ena
- NCBI tax ID: 13243
GC content
- @ref: 1839
- GC-content: 65.8
- method: high performance liquid chromatography (HPLC)
External links
@ref: 1839
culture collection no.: DSM 4814, JCM 6098, ATCC 49629, IFO 15233, NBRC 15233
straininfo link
- @ref: 82721
- straininfo: 46114
Reference
| @id | authors | catalogue | doi/url | title | journal | pubmed |
|---|---|---|---|---|---|---|
| 1839 | Curators of the DSMZ | Leibniz Institut DSMZ-Deutsche Sammlung von Mikroorganismen und Zellkulturen GmbH (DSM 4814) | https://www.dsmz.de/collection/catalogue/details/culture/DSM-4814 | |||
| 20215 | Parte, A.C., Sardà Carbasse, J., Meier-Kolthoff, J.P., Reimer, L.C. and Göker, M. | 10.1099/ijsem.0.004332 | List of Prokaryotic names with Standing in Nomenclature (LPSN) moves to the DSMZ | |||
| 66794 | Antje Chang, Lisa Jeske, Sandra Ulbrich, Julia Hofmann, Julia Koblitz, Ida Schomburg, Meina Neumann-Schaal, Dieter Jahn, Dietmar Schomburg | 10.1093/nar/gkaa1025 | BRENDA, the ELIXIR core data resource in 2021: new developments and updates | Nucleic Acids Res. 49: D498-D508 2020 | 33211880 | |
| 67770 | Curators of the JCM | https://jcm.brc.riken.jp/en/ | ||||
| 69479 | João F Matias Rodrigues, Janko Tackmann,Gregor Rot, Thomas SB Schmidt, Lukas Malfertheiner, Mihai Danaila,Marija Dmitrijeva, Daniela Gaio, Nicolas Näpflin and Christian von Mering. University of Zurich. | https://microbeatlas.org/ | MicrobeAtlas 1.0 beta | |||
| 82721 | Reimer, L.C., Lissin, A.,Schober, I., Witte,J.F., Podstawka, A., Lüken, H., Bunk, B.,Overmann, J. | 10.60712/SI-ID46114.1 | StrainInfo: A central database for resolving microbial strain identifiers |