Strain identifier
BacDive ID: 13528
Type strain: 
Species: Rarobacter faecitabidus
Strain Designation: YLM-39
Strain history: S. Sato YLM-39.
NCBI tax ID(s): 13243 (species)
version 8.1 (current version)
General
@ref: 1837
BacDive-ID: 13528
DSM-Number: 4811
keywords: Bacteria, mesophilic
description: Rarobacter faecitabidus YLM-39 is a mesophilic bacterium that was isolated from discharged water from alcoholic beverage factory.
NCBI tax id
- NCBI tax id: 13243
- Matching level: species
strain history
| @ref | history |
|---|---|
| 1837 | <- JCM <- S. Sato, YLM-39 |
| 67770 | S. Sato YLM-39. |
doi: 10.13145/bacdive13528.20230509.8.1
Name and taxonomic classification
LPSN
- @ref: 20215
- description: domain/bacteria
- keyword: phylum/actinomycetota
- domain: Bacteria
- phylum: Actinomycetota
- class: Actinomycetes
- order: Micrococcales
- family: Rarobacteraceae
- genus: Rarobacter
- species: Rarobacter faecitabidus
- full scientific name: Rarobacter faecitabidus Yamamoto et al. 1988
@ref: 1837
domain: Bacteria
phylum: Actinobacteria
class: Actinobacteria
order: Actinomycetales
family: Rarobacteraceae
genus: Rarobacter
species: Rarobacter faecitabidus
full scientific name: Rarobacter faecitabidus Yamamoto et al. 1988
strain designation: YLM-39
type strain: no
Culture and growth conditions
culture medium
- @ref: 1837
- name: YM-CATALASE MEDIUM (DSMZ Medium 469)
- growth: yes
- link: https://mediadive.dsmz.de/medium/469
- composition: Name: YM-CATALASE MEDIUM (DSMZ Medium 469) Composition: K2HPO4 5.7 g/l Malt extract 5.0 g/l Yeast extract 5.0 g/l NH4H2PO4 1.2 g/l MgSO4 x 7 H2O 0.2 g/l Catalase 0.06 g/l Distilled water
culture temp
| @ref | growth | type | temperature | range |
|---|---|---|---|---|
| 1837 | positive | growth | 30 | mesophilic |
| 67770 | positive | growth | 30 | mesophilic |
Physiology and metabolism
observation
- @ref: 67770
- observation: quinones: MK-9
Isolation, sampling and environmental information
isolation
| @ref | sample type | country | origin.country | continent |
|---|---|---|---|---|
| 1837 | discharged water from alcoholic beverage factory | Japan | JPN | Asia |
| 67770 | Discharged water from an alcoholic beverage factory |
isolation source categories
| Cat1 | Cat2 | Cat3 |
|---|---|---|
| #Engineered | #Food production | #Fermented |
| #Engineered | #Industrial | #Plant (Factory) |
| #Engineered | #Waste | #Wastewater |
| #Engineered | #Food production | #Beverage |
Safety information
risk assessment
- @ref: 1837
- biosafety level: 1
- biosafety level comment: Risk group (German classification)
Sequence information
GC content
- @ref: 1837
- GC-content: 65.7
- method: high performance liquid chromatography (HPLC)
External links
@ref: 1837
culture collection no.: DSM 4811, JCM 6099
straininfo link
- @ref: 82719
- straininfo: 47872
Reference
| @id | authors | catalogue | doi/url | title | journal | pubmed |
|---|---|---|---|---|---|---|
| 1837 | Curators of the DSMZ | Leibniz Institut DSMZ-Deutsche Sammlung von Mikroorganismen und Zellkulturen GmbH (DSM 4811) | https://www.dsmz.de/collection/catalogue/details/culture/DSM-4811 | |||
| 20215 | Parte, A.C., Sardà Carbasse, J., Meier-Kolthoff, J.P., Reimer, L.C. and Göker, M. | 10.1099/ijsem.0.004332 | List of Prokaryotic names with Standing in Nomenclature (LPSN) moves to the DSMZ | |||
| 66794 | Antje Chang, Lisa Jeske, Sandra Ulbrich, Julia Hofmann, Julia Koblitz, Ida Schomburg, Meina Neumann-Schaal, Dieter Jahn, Dietmar Schomburg | 10.1093/nar/gkaa1025 | BRENDA, the ELIXIR core data resource in 2021: new developments and updates | Nucleic Acids Res. 49: D498-D508 2020 | 33211880 | |
| 67770 | Curators of the JCM | https://jcm.brc.riken.jp/en/ | ||||
| 82719 | Reimer, L.C., Lissin, A.,Schober, I., Witte,J.F., Podstawka, A., Lüken, H., Bunk, B.,Overmann, J. | 10.60712/SI-ID47872.1 | StrainInfo: A central database for resolving microbial strain identifiers |