Strain identifier

BacDive ID: 135225

Type strain: No

Species: Clostridium septicum

Strain Designation: Cimatsi

Strain history: CIP <- 1960, M. Guillaumie: strain Cimatsi

NCBI tax ID(s): 1504 (species)

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General

@ref: 34195

BacDive-ID: 135225

keywords: Bacteria, anaerobe, mesophilic, Gram-positive, rod-shaped

description: Clostridium septicum Cimatsi is an anaerobe, mesophilic, Gram-positive bacterium that was isolated from Unknown source.

NCBI tax id

  • NCBI tax id: 1504
  • Matching level: species

strain history

@refhistory
341951960, M. Guillaumie: strain Cimatsi
34195CIP <- 1960, M. Guillaumie: strain Cimatsi

doi: 10.13145/bacdive135225.20230509.8.1

Name and taxonomic classification

LPSN

  • @ref: 20215
  • description: domain/bacteria
  • keyword: phylum/bacillota
  • domain: Bacteria
  • phylum: Bacillota
  • class: Clostridia
  • order: Eubacteriales
  • family: Clostridiaceae
  • genus: Clostridium
  • species: Clostridium septicum
  • full scientific name: Clostridium septicum (Macé 1889) Ford 1927 (Approved Lists 1980)

  • synonyms

    • @ref: 20215
    • synonym: Bacillus septicus

@ref: 34195

domain: Bacteria

phylum: Firmicutes

class: Clostridia

order: Eubacteriales

family: Clostridiaceae

genus: Clostridium

species: Clostridium septicum

strain designation: Cimatsi

type strain: no

Morphology

cell morphology

  • @ref: 34195
  • gram stain: positive
  • cell shape: rod-shaped
  • motility: no

colony morphology

  • @ref: 34195

Culture and growth conditions

culture medium

@refnamegrowthcompositionlink
34195MEDIUM 20 - for Anaerobic bacteriayesAgar (15.000 g);Glucose (5.000 g);Yeast extract (20.000 g);Tryptone (30.000 g);Cysteine hydrochloride (0.500 g);distilled water (1000.000 ml);Hemin solution -M00149 (25.000 ml)
34195CIP Medium 20yeshttps://catalogue-crbip.pasteur.fr/fiche_milieu.xhtml?crbip=20

culture temp

  • @ref: 34195
  • growth: positive
  • type: growth
  • temperature: 37
  • range: mesophilic

Physiology and metabolism

oxygen tolerance

  • @ref: 34195
  • oxygen tolerance: anaerobe

metabolite utilization

@refChebi-IDmetaboliteutilization activitykind of utilization tested
3419517108D-arabinose-degradation
3419515824D-fructose+degradation
3419517634D-glucose+degradation
3419565327D-xylose+degradation
3419517057cellobiose-degradation
3419517716lactose+degradation
3419517306maltose+degradation
3419517814salicin+degradation
3419517992sucrose+degradation
341954853esculin+hydrolysis
3419517632nitrate-reduction
3419516301nitrite+reduction
3419517632nitrate+respiration

metabolite production

  • @ref: 34195
  • Chebi-ID: 35581
  • metabolite: indole
  • production: no

enzymes

@refvalueactivityec
34195oxidase-
34195beta-galactosidase+3.2.1.23
34195gelatinase+
34195amylase+
34195DNase-
34195caseinase-3.4.21.50
34195catalase-1.11.1.6
34195tween esterase-
34195lecithinase-
34195lipase-
34195protease-
34195urease-3.5.1.5
68382alkaline phosphatase-3.1.3.1
68382esterase (C 4)-
68382esterase lipase (C 8)+
68382lipase (C 14)-
68382leucine arylamidase-3.4.11.1
68382valine arylamidase-
68382cystine arylamidase-3.4.11.3
68382trypsin-3.4.21.4
68382alpha-chymotrypsin-3.4.21.1
68382acid phosphatase-3.1.3.2
68382naphthol-AS-BI-phosphohydrolase+
68382alpha-galactosidase-3.2.1.22
68382beta-galactosidase-3.2.1.23
68382beta-glucuronidase-3.2.1.31
68382alpha-glucosidase-3.2.1.20
68382beta-glucosidase-3.2.1.21
68382N-acetyl-beta-glucosaminidase+3.2.1.52
68382alpha-mannosidase-3.2.1.24
68382alpha-fucosidase-3.2.1.51

API zym

@refControlAlkaline phosphataseEsteraseEsterase LipaseLipaseLeucine arylamidaseValine arylamidaseCystine arylamidaseTrypsinalpha- ChymotrypsinAcid phosphataseNaphthol-AS-BI-phosphohydrolasealpha- Galactosidasebeta- Galactosidasebeta- Glucuronidasealpha- Glucosidasebeta- GlucosidaseN-acetyl-beta- glucosaminidasealpha- Mannosidasealpha- Fucosidase
34195---+-------+-----+--

Isolation, sampling and environmental information

isolation

  • @ref: 34195
  • sample type: Unknown source

Safety information

risk assessment

  • @ref: 34195
  • biosafety level: 2
  • biosafety level comment: Risk group (French classification)

External links

@ref: 34195

culture collection no.: CIP 60.17

straininfo link

  • @ref: 92622
  • straininfo: 67936

Reference

@idauthorstitledoi/urlcataloguejournalpubmed
20215Parte, A.C., Sardà Carbasse, J., Meier-Kolthoff, J.P., Reimer, L.C. and Göker, M.List of Prokaryotic names with Standing in Nomenclature (LPSN) moves to the DSMZ10.1099/ijsem.0.004332
34195Curators of the CIPhttps://catalogue-crbip.pasteur.fr/fiche_catalogue.xhtml?crbip=CIP%2060.17Collection of Institut Pasteur (CIP 60.17)
66794Antje Chang, Lisa Jeske, Sandra Ulbrich, Julia Hofmann, Julia Koblitz, Ida Schomburg, Meina Neumann-Schaal, Dieter Jahn, Dietmar SchomburgBRENDA, the ELIXIR core data resource in 2021: new developments and updates10.1093/nar/gkaa1025Nucleic Acids Res. 49: D498-D508 202033211880
68382Automatically annotated from API zym
92622Reimer, L.C., Lissin, A.,Schober, I., Witte,J.F., Podstawka, A., Lüken, H., Bunk, B.,Overmann, J.StrainInfo: A central database for resolving microbial strain identifiers10.60712/SI-ID67936.1