Strain identifier

BacDive ID: 135168

Type strain: No

Species: Pseudomonas aeruginosa

Strain Designation: 121/1956-231

Strain history: CIP <- 1959, H. Kleinmaier, Hyg. Inst., Bonn, Germany: strain 121/1956-231

NCBI tax ID(s): 287 (species)

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General

@ref: 34133

BacDive-ID: 135168

keywords: genome sequence, Bacteria, obligate aerobe, mesophilic, motile

description: Pseudomonas aeruginosa 121/1956-231 is an obligate aerobe, mesophilic, motile bacterium of the family Pseudomonadaceae.

NCBI tax id

  • NCBI tax id: 287
  • Matching level: species

strain history

  • @ref: 34133
  • history: CIP <- 1959, H. Kleinmaier, Hyg. Inst., Bonn, Germany: strain 121/1956-231

doi: 10.13145/bacdive135168.20230509.8.1

Name and taxonomic classification

LPSN

  • @ref: 20215
  • description: domain/bacteria
  • keyword: phylum/pseudomonadota
  • domain: Bacteria
  • phylum: Pseudomonadota
  • class: Gammaproteobacteria
  • order: Pseudomonadales
  • family: Pseudomonadaceae
  • genus: Pseudomonas
  • species: Pseudomonas aeruginosa
  • full scientific name: Pseudomonas aeruginosa (Schroeter 1872) Migula 1900 (Approved Lists 1980)

  • synonyms

    • @ref: 20215
    • synonym: Bacterium aeruginosum

@ref: 34133

domain: Bacteria

phylum: Proteobacteria

class: Gammaproteobacteria

order: Pseudomonadales

family: Pseudomonadaceae

genus: Pseudomonas

species: Pseudomonas aeruginosa

strain designation: 121/1956-231

type strain: no

Morphology

cell morphology

@refmotilityconfidencegram staincell shape
69480yes99.298
6948099.986negative
34133yesnegativerod-shaped

Culture and growth conditions

culture medium

@refnamegrowthcompositionlink
34133MEDIUM 3 - Columbia agaryesColumbia agar (39.000 g);distilled water (1000.000 ml)
34133CIP Medium 3yeshttps://catalogue-crbip.pasteur.fr/fiche_milieu.xhtml?crbip=3
34133CIP Medium 72yeshttps://catalogue-crbip.pasteur.fr/fiche_milieu.xhtml?crbip=72

culture temp

  • @ref: 34133
  • growth: positive
  • type: growth
  • temperature: 30
  • range: mesophilic

Physiology and metabolism

oxygen tolerance

  • @ref: 34133
  • oxygen tolerance: obligate aerobe

spore formation

@refspore formationconfidence
69481no99
69480no99.924

metabolite utilization

@refChebi-IDmetaboliteutilization activitykind of utilization tested
3413317632nitrate+reduction
3413316301nitrite+reduction

metabolite production

  • @ref: 34133
  • Chebi-ID: 35581
  • metabolite: indole
  • production: no

enzymes

@refvalueactivityec
34133oxidase+
34133catalase+1.11.1.6
34133urease-3.5.1.5
68382alkaline phosphatase+3.1.3.1
68382esterase (C 4)+
68382esterase lipase (C 8)+
68382lipase (C 14)+
68382leucine arylamidase+3.4.11.1
68382valine arylamidase-
68382cystine arylamidase-3.4.11.3
68382trypsin+3.4.21.4
68382alpha-chymotrypsin-3.4.21.1
68382acid phosphatase+3.1.3.2
68382naphthol-AS-BI-phosphohydrolase+
68382alpha-galactosidase-3.2.1.22
68382beta-galactosidase-3.2.1.23
68382beta-glucuronidase-3.2.1.31
68382alpha-glucosidase-3.2.1.20
68382beta-glucosidase-3.2.1.21
68382N-acetyl-beta-glucosaminidase-3.2.1.52
68382alpha-mannosidase-3.2.1.24
68382alpha-fucosidase-3.2.1.51

API zym

@refControlAlkaline phosphataseEsteraseEsterase LipaseLipaseLeucine arylamidaseValine arylamidaseCystine arylamidaseTrypsinalpha- ChymotrypsinAcid phosphataseNaphthol-AS-BI-phosphohydrolasealpha- Galactosidasebeta- Galactosidasebeta- Glucuronidasealpha- Glucosidasebeta- GlucosidaseN-acetyl-beta- glucosaminidasealpha- Mannosidasealpha- Fucosidase
34133-+++++--+-++--------

Safety information

risk assessment

  • @ref: 34133
  • biosafety level: 2
  • biosafety level comment: Risk group (French classification)

Sequence information

Genome sequences

@refdescriptionaccessionassembly leveldatabaseNCBI tax ID
66792Pseudomonas aeruginosa NCTC11450GCA_900455165contigncbi287
66792Pseudomonas aeruginosa ATCC 33358GCA_001444955scaffoldncbi287
66792Pseudomonas aeruginosa strain ATCC 33358287.1992wgspatric287
66792Pseudomonas aeruginosa strain NCTC11450287.9412wgspatric287
66792Pseudomonas aeruginosa ATCC 333582660238005draftimg287

Genome-based predictions

predictions

traitpredictionconfidencetraining_data
spore-formingno99no
flagellatedyes84.468no
gram-positiveno98.342no
anaerobicno98.511no
aerobicyes93.082no
halophileno92.103no
spore-formingno92.068no
glucose-utilyes89.612no
motileyes89.405no
thermophileno99.782no
glucose-fermentno89.891no

External links

@ref: 34133

culture collection no.: CIP 59.44, ATCC 33358, NCTC 11450

straininfo link

  • @ref: 92575
  • straininfo: 7947

literature

  • topic: Genetics
  • Pubmed-ID: 7511985
  • title: Analysis by the reductive-cleavage method of a polysaccharide containing 2-acetamido-2,6-dideoxy-D- and -L-galactopyranosyl residues.
  • authors: D'Ambra AJ, Gray GR
  • journal: Carbohydr Res
  • DOI: 10.1016/0008-6215(94)84281-7
  • year: 1994
  • mesh: Benzoates/chemistry, Butanols/chemistry, Carbohydrate Sequence, Fucose/*analogs & derivatives/analysis, Magnetic Resonance Spectroscopy, Methanol/chemistry, Methylation, Molecular Sequence Data, O Antigens, Oxidation-Reduction, Polysaccharides, Bacterial/*chemistry/isolation & purification, Protons, Pseudomonas aeruginosa/*chemistry
  • topic2: Enzymology

Reference

@idauthorstitledoi/urlcatalogue
20215Parte, A.C., Sardà Carbasse, J., Meier-Kolthoff, J.P., Reimer, L.C. and Göker, M.List of Prokaryotic names with Standing in Nomenclature (LPSN) moves to the DSMZ10.1099/ijsem.0.004332
34133Curators of the CIPhttps://catalogue-crbip.pasteur.fr/fiche_catalogue.xhtml?crbip=CIP%2059.44Collection of Institut Pasteur (CIP 59.44)
66792Julia Koblitz, Joaquim Sardà, Lorenz Christian Reimer, Boyke Bunk, Jörg OvermannAutomatically annotated for the DiASPora project (Digital Approaches for the Synthesis of Poorly Accessible Biodiversity Information)https://diaspora-project.de/progress.html#genomes
68382Automatically annotated from API zym
69480Julia Koblitz, Joaquim Sardà, Lorenz Christian Reimer, Boyke Bunk, Jörg OvermannPredictions based on genome sequence made in the Diaspora project (Digital Approaches for the Synthesis of Poorly Accessible Biodiversity Information)https://diaspora-project.de/progress.html#genomes
69481Xiao-Yin To, René Mreches, Martin Binder, Alice C. McHardy, Philipp C. MünchPredictions based on the model GenomeNet Sporulation v. 110.21203/rs.3.rs-2527258/v1
92575Reimer, L.C., Lissin, A.,Schober, I., Witte,J.F., Podstawka, A., Lüken, H., Bunk, B.,Overmann, J.StrainInfo: A central database for resolving microbial strain identifiers10.60712/SI-ID7947.1