Strain identifier
BacDive ID: 135139
Type strain: 
Species: Metamycoplasma auris
Strain Designation: UIA
Strain history: CIP <- 1998, G. Bölske, Nat. Vet. Inst., Uppsala, Sweden <- J.G. Tully: strain UIA
NCBI tax ID(s): 51363 (species)
version 8.1 (current version)
General
@ref: 34083
BacDive-ID: 135139
keywords: genome sequence, Bacteria, mesophilic, Gram-negative
description: Metamycoplasma auris UIA is a mesophilic, Gram-negative bacterium of the family Metamycoplasmataceae.
NCBI tax id
- NCBI tax id: 51363
- Matching level: species
strain history
- @ref: 34083
- history: CIP <- 1998, G. Bölske, Nat. Vet. Inst., Uppsala, Sweden <- J.G. Tully: strain UIA
doi: 10.13145/bacdive135139.20230509.8.1
Name and taxonomic classification
LPSN
- @ref: 20215
- description: domain/bacteria
- keyword: phylum/mycoplasmatota
- domain: Bacteria
- phylum: Mycoplasmatota
- class: Mollicutes
- order: Mycoplasmoidales
- family: Metamycoplasmataceae
- genus: Metamycoplasma
- species: Metamycoplasma auris
- full scientific name: Metamycoplasma auris (Da Massa et al. 1994) Gupta et al. 2018
synonyms
- @ref: 20215
- synonym: Mycoplasma auris
@ref: 34083
domain: Bacteria
phylum: Tenericutes
class: Mollicutes
order: Mycoplasmoidales
family: Metamycoplasmataceae
genus: Mycoplasma
species: Mycoplasma auris
strain designation: UIA
type strain: yes
Morphology
cell morphology
- @ref: 69480
- gram stain: negative
- confidence: 98.585
Culture and growth conditions
culture medium
| @ref | name | growth | composition | link |
|---|---|---|---|---|
| 34083 | MEDIUM 89 - for Mycoplasma | yes | Distilled water make up to (670.000 ml);PPLO broth (17.000 g);Yeast extract solution 25 % - M00263 (100.000 ml);0.1 % Phenol red - M00387 (20.000 ml);Sterile supplement - M00276 (210.000 ml) | |
| 34083 | CIP Medium 89 | yes | https://catalogue-crbip.pasteur.fr/fiche_milieu.xhtml?crbip=89 |
culture temp
- @ref: 34083
- growth: positive
- type: growth
- temperature: 37
- range: mesophilic
Physiology and metabolism
spore formation
| @ref | spore formation | confidence |
|---|---|---|
| 69481 | no | 100 |
| 69480 | no | 99.998 |
Isolation, sampling and environmental information
isolation
| @ref | country | origin.country | continent | sample type |
|---|---|---|---|---|
| 34083 | Australia | AUS | Australia and Oceania | |
| 34083 | Australia | AUS | Australia and Oceania | Goat, external ear canal |
Safety information
risk assessment
- @ref: 34083
- biosafety level: 2
- biosafety level comment: Risk group (French classification)
Sequence information
Genome sequences
| @ref | description | accession | assembly level | database | NCBI tax ID |
|---|---|---|---|---|---|
| 66792 | Metamycoplasma auris ATCC 51348 | GCA_003253435 | scaffold | ncbi | 51363 |
| 66792 | Mycoplasma auris strain ATCC 51348 | 51363.5 | wgs | patric | 51363 |
| 66792 | Mycoplasma auris ATCC 51348 | 2681812810 | draft | img | 51363 |
Genome-based predictions
predictions
| trait | prediction | confidence | training_data |
|---|---|---|---|
| spore-forming | no | 100 | no |
| flagellated | no | 97.668 | no |
| gram-positive | no | 54.811 | no |
| anaerobic | no | 96.71 | no |
| halophile | no | 53.04 | no |
| spore-forming | no | 98.067 | no |
| aerobic | no | 94.084 | no |
| thermophile | no | 98.182 | no |
| glucose-util | yes | 86.349 | no |
| motile | no | 94.596 | no |
| glucose-ferment | yes | 70.964 | no |
External links
@ref: 34083
culture collection no.: CIP 105677, ATCC 51348, NCTC 11731
straininfo link
- @ref: 92551
- straininfo: 46148
Reference
| @id | authors | title | doi/url | catalogue |
|---|---|---|---|---|
| 20215 | Parte, A.C., Sardà Carbasse, J., Meier-Kolthoff, J.P., Reimer, L.C. and Göker, M. | List of Prokaryotic names with Standing in Nomenclature (LPSN) moves to the DSMZ | 10.1099/ijsem.0.004332 | |
| 34083 | Curators of the CIP | https://catalogue-crbip.pasteur.fr/fiche_catalogue.xhtml?crbip=CIP%20105677 | Collection of Institut Pasteur (CIP 105677) | |
| 66792 | Julia Koblitz, Joaquim Sardà, Lorenz Christian Reimer, Boyke Bunk, Jörg Overmann | Automatically annotated for the DiASPora project (Digital Approaches for the Synthesis of Poorly Accessible Biodiversity Information) | https://diaspora-project.de/progress.html#genomes | |
| 69480 | Julia Koblitz, Joaquim Sardà, Lorenz Christian Reimer, Boyke Bunk, Jörg Overmann | Predictions based on genome sequence made in the Diaspora project (Digital Approaches for the Synthesis of Poorly Accessible Biodiversity Information) | https://diaspora-project.de/progress.html#genomes | |
| 69481 | Xiao-Yin To, René Mreches, Martin Binder, Alice C. McHardy, Philipp C. Münch | Predictions based on the model GenomeNet Sporulation v. 1 | 10.21203/rs.3.rs-2527258/v1 | |
| 92551 | Reimer, L.C., Lissin, A.,Schober, I., Witte,J.F., Podstawka, A., Lüken, H., Bunk, B.,Overmann, J. | StrainInfo: A central database for resolving microbial strain identifiers | 10.60712/SI-ID46148.1 |