Strain identifier
BacDive ID: 135109
Type strain: 
Species: Streptococcus gordonii
Strain Designation: Challis
Strain history: CIP <- 2015, NCTC <- 1949, RM Fry, PHLS, Cambridge, UK <- 1938, DC Colebrook: strain Challis
NCBI tax ID(s): 1302 (species)
version 8.1 (current version)
General
@ref: 34025
BacDive-ID: 135109
keywords: genome sequence, Bacteria, mesophilic
description: Streptococcus gordonii Challis is a mesophilic bacterium of the family Streptococcaceae.
NCBI tax id
- NCBI tax id: 1302
- Matching level: species
strain history
- @ref: 34025
- history: CIP <- 2015, NCTC <- 1949, RM Fry, PHLS, Cambridge, UK <- 1938, DC Colebrook: strain Challis
doi: 10.13145/bacdive135109.20230509.8.1
Name and taxonomic classification
LPSN
- @ref: 20215
- description: domain/bacteria
- keyword: phylum/bacillota
- domain: Bacteria
- phylum: Bacillota
- class: Bacilli
- order: Lactobacillales
- family: Streptococcaceae
- genus: Streptococcus
- species: Streptococcus gordonii
- full scientific name: Streptococcus gordonii Kilian et al. 1989
@ref: 34025
domain: Bacteria
phylum: Firmicutes
class: Bacilli
order: Lactobacillales
family: Streptococcaceae
genus: Streptococcus
species: Streptococcus gordonii
strain designation: Challis
type strain: no
Morphology
cell morphology
| @ref | motility | confidence | gram stain | cell shape |
|---|---|---|---|---|
| 69480 | no | 94.164 | ||
| 69480 | 100 | positive | ||
| 34025 | no | positive | coccus-shaped |
Culture and growth conditions
culture medium
| @ref | name | growth | composition | link |
|---|---|---|---|---|
| 34025 | MEDIUM 72- for trypto casein soja agar | yes | Distilled water make up to (1000.000 ml);Trypto casein soy agar (40.000 g) | |
| 34025 | CIP Medium 72 | yes | https://catalogue-crbip.pasteur.fr/fiche_milieu.xhtml?crbip=72 |
culture temp
- @ref: 34025
- growth: positive
- type: growth
- temperature: 37
- range: mesophilic
Physiology and metabolism
spore formation
| @ref | spore formation | confidence |
|---|---|---|
| 69481 | no | 100 |
| 69480 | no | 99.961 |
Isolation, sampling and environmental information
isolation
- @ref: 34025
- isolation date: 1938-01-03
Safety information
risk assessment
- @ref: 34025
- biosafety level: 2
- biosafety level comment: Risk group (French classification)
Sequence information
Genome sequences
| @ref | description | accession | assembly level | database | NCBI tax ID |
|---|---|---|---|---|---|
| 66792 | Streptococcus gordonii NCTC7868 | GCA_900636555 | complete | ncbi | 1302 |
| 66792 | Streptococcus gordonii strain NCTC7868 | 1302.214 | complete | patric | 1302 |
Genome-based predictions
predictions
| trait | prediction | confidence | training_data |
|---|---|---|---|
| spore-forming | no | 100 | no |
| flagellated | no | 95.893 | no |
| gram-positive | yes | 94.125 | no |
| anaerobic | no | 97.248 | no |
| aerobic | no | 96.527 | no |
| halophile | yes | 76.053 | no |
| spore-forming | no | 91.336 | no |
| thermophile | no | 99.178 | no |
| glucose-util | yes | 86.647 | no |
| motile | no | 95.962 | no |
| glucose-ferment | yes | 81.566 | no |
External links
@ref: 34025
culture collection no.: CIP 110914, NCTC 7868, NCTC 5337
straininfo link
- @ref: 92525
- straininfo: 61735
literature
- topic: Metabolism
- Pubmed-ID: 2172340
- title: Characterization of the alpha-amylase receptor of Streptococcus gordonii NCTC 7868.
- authors: Douglas CW
- journal: J Dent Res
- DOI: 10.1177/00220345900690110701
- year: 1990
- mesh: Chromatography, Affinity, Chromatography, Agarose, Chromatography, DEAE-Cellulose, Electrophoresis, Polyacrylamide Gel, Phenylmethylsulfonyl Fluoride/metabolism, Protein Binding, Receptors, Cell Surface/*metabolism, Salivary Proteins and Peptides/chemistry/*metabolism, Sodium Dodecyl Sulfate, Streptococcus/*metabolism, alpha-Amylases/chemistry/*metabolism
- topic2: Enzymology
Reference
| @id | authors | title | doi/url | catalogue |
|---|---|---|---|---|
| 20215 | Parte, A.C., Sardà Carbasse, J., Meier-Kolthoff, J.P., Reimer, L.C. and Göker, M. | List of Prokaryotic names with Standing in Nomenclature (LPSN) moves to the DSMZ | 10.1099/ijsem.0.004332 | |
| 34025 | Curators of the CIP | https://catalogue-crbip.pasteur.fr/fiche_catalogue.xhtml?crbip=CIP%20110914 | Collection of Institut Pasteur (CIP 110914) | |
| 66792 | Julia Koblitz, Joaquim Sardà, Lorenz Christian Reimer, Boyke Bunk, Jörg Overmann | Automatically annotated for the DiASPora project (Digital Approaches for the Synthesis of Poorly Accessible Biodiversity Information) | https://diaspora-project.de/progress.html#genomes | |
| 69480 | Julia Koblitz, Joaquim Sardà, Lorenz Christian Reimer, Boyke Bunk, Jörg Overmann | Predictions based on genome sequence made in the Diaspora project (Digital Approaches for the Synthesis of Poorly Accessible Biodiversity Information) | https://diaspora-project.de/progress.html#genomes | |
| 69481 | Xiao-Yin To, René Mreches, Martin Binder, Alice C. McHardy, Philipp C. Münch | Predictions based on the model GenomeNet Sporulation v. 1 | 10.21203/rs.3.rs-2527258/v1 | |
| 92525 | Reimer, L.C., Lissin, A.,Schober, I., Witte,J.F., Podstawka, A., Lüken, H., Bunk, B.,Overmann, J. | StrainInfo: A central database for resolving microbial strain identifiers | 10.60712/SI-ID61735.1 |