Strain identifier

BacDive ID: 135098

Type strain: Yes

Species: Devosia neptuniae

Strain history: CIP <- 2004, CECT <- E. Velazquez <- N.S. Subba-Rao

NCBI tax ID(s): 191302 (species)

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General

@ref: 33956

BacDive-ID: 135098

keywords: Bacteria, mesophilic, Gram-negative, motile, rod-shaped

description: Devosia neptuniae CIP 108397 is a mesophilic, Gram-negative, motile bacterium of the family Devosiaceae.

NCBI tax id

  • NCBI tax id: 191302
  • Matching level: species

strain history

  • @ref: 33956
  • history: CIP <- 2004, CECT <- E. Velazquez <- N.S. Subba-Rao

doi: 10.13145/bacdive135098.20230509.8.1

Name and taxonomic classification

LPSN

  • @ref: 20215
  • description: domain/bacteria
  • keyword: phylum/pseudomonadota
  • domain: Bacteria
  • phylum: Pseudomonadota
  • class: Alphaproteobacteria
  • order: Hyphomicrobiales
  • family: Devosiaceae
  • genus: Devosia
  • species: Devosia neptuniae
  • full scientific name: Devosia neptuniae Rivas et al. 2003

@ref: 33956

domain: Bacteria

phylum: Proteobacteria

class: Alphaproteobacteria

order: Hyphomicrobiales

family: Hyphomicrobiaceae

genus: Devosia

species: Devosia neptuniae

type strain: yes

Morphology

cell morphology

  • @ref: 33956
  • gram stain: negative
  • cell shape: rod-shaped
  • motility: yes

colony morphology

  • @ref: 33956

Culture and growth conditions

culture medium

@refnamegrowthcompositionlink
33956MEDIUM 72- for trypto casein soja agaryesDistilled water make up to (1000.000 ml);Trypto casein soy agar (40.000 g)
33956CIP Medium 600yeshttps://catalogue-crbip.pasteur.fr/fiche_milieu.xhtml?crbip=600
33956CIP Medium 72yeshttps://catalogue-crbip.pasteur.fr/fiche_milieu.xhtml?crbip=72

culture temp

@refgrowthtypetemperaturerange
33956positivegrowth30mesophilic
33956positivegrowth5-45

Physiology and metabolism

halophily

@refsaltgrowthtested relationconcentration
33956NaClpositivegrowth0-2 %
33956NaClnogrowth4 %
33956NaClnogrowth6 %
33956NaClnogrowth8 %
33956NaClnogrowth10 %

metabolite utilization

@refChebi-IDmetaboliteutilization activitykind of utilization tested
3395616947citrate-carbon source
339564853esculin+hydrolysis
33956606565hippurate-hydrolysis
3395617632nitrate-builds gas from
3395617632nitrate-reduction
3395616301nitrite-builds gas from
3395616301nitrite-reduction
3395615792malonate-assimilation
3395617632nitrate-respiration

antibiotic resistance

  • @ref: 33956
  • metabolite: 0129 (2,4-Diamino-6,7-di-iso-propylpteridine phosphate)
  • is antibiotic: yes
  • is sensitive: yes
  • is resistant: no

metabolite production

  • @ref: 33956
  • Chebi-ID: 35581
  • metabolite: indole
  • production: no

metabolite tests

@refChebi-IDmetabolitevoges-proskauer-testmethylred-test
3395615688acetoin-
3395617234glucose+

enzymes

@refvalueactivityec
33956oxidase-
33956beta-galactosidase-3.2.1.23
33956alcohol dehydrogenase-1.1.1.1
33956gelatinase-
33956amylase-
33956DNase-
33956caseinase-3.4.21.50
33956catalase+1.11.1.6
33956tween esterase-
33956gamma-glutamyltransferase-2.3.2.2
33956lecithinase-
33956lipase-
33956lysine decarboxylase-4.1.1.18
33956ornithine decarboxylase-4.1.1.17
33956phenylalanine ammonia-lyase+4.3.1.24
33956tryptophan deaminase+
33956urease+3.5.1.5
68382alkaline phosphatase+3.1.3.1
68382esterase (C 4)+
68382esterase lipase (C 8)+
68382lipase (C 14)-
68382leucine arylamidase+3.4.11.1
68382valine arylamidase-
68382cystine arylamidase-3.4.11.3
68382trypsin+3.4.21.4
68382alpha-chymotrypsin-3.4.21.1
68382acid phosphatase+3.1.3.2
68382naphthol-AS-BI-phosphohydrolase+
68382alpha-galactosidase+3.2.1.22
68382beta-galactosidase+3.2.1.23
68382beta-glucuronidase+3.2.1.31
68382alpha-glucosidase-3.2.1.20
68382beta-glucosidase+3.2.1.21
68382N-acetyl-beta-glucosaminidase+3.2.1.52
68382alpha-mannosidase+3.2.1.24
68382alpha-fucosidase-3.2.1.51

API zym

@refControlAlkaline phosphataseEsteraseEsterase LipaseLipaseLeucine arylamidaseValine arylamidaseCystine arylamidaseTrypsinalpha- ChymotrypsinAcid phosphataseNaphthol-AS-BI-phosphohydrolasealpha- Galactosidasebeta- Galactosidasebeta- Glucuronidasealpha- Glucosidasebeta- GlucosidaseN-acetyl-beta- glucosaminidasealpha- Mannosidasealpha- Fucosidase
33956-+++-+--+-+++++-+++-

API biotype100

@refGLUFRUGALTREMNESBEMELSACRAFMTEMALLACLTEMbGaMaGaCELGENMbGuESCRIBARAXYLPLERHAFUCMLZDARLLARLXLTDULTAGGLYINOMANMTLTURSORADOHBGLYXERYMDG3MDGSATMUCLTATDTATMTATDMLTLMLTCATETATETTECITGRTGAT2KG5KGTRYNAGGNTPACPATpOBEQATGTEmOBEBATPPATCMTTGEBETPCEABTHINLATCAPCYTHISSUCFUMGREGYTAVTETNTTNGLNITA3OBUAPTGTTPRODALALALASERMNTPROPTYR2KT
33956----------+----------------------------------------------------------------------------------------

Isolation, sampling and environmental information

isolation

@refcountryorigin.countrycontinentsample typeisolation date
33956IndiaINDAsia
33956IndiaINDAsiaNeptunia natans1995

Safety information

risk assessment

  • @ref: 33956
  • biosafety level: 1
  • biosafety level comment: Risk group (French classification)

External links

@ref: 33956

culture collection no.: CIP 108397, CECT 5650, LMG 21357

straininfo link

  • @ref: 92519
  • straininfo: 94677

literature

topicPubmed-IDtitleauthorsjournalDOIyearmeshtopic2
Phylogeny12747409Description of Devosia neptuniae sp. nov. that nodulates and fixes nitrogen in symbiosis with Neptunia natans, an aquatic legume from India.Rivas R, Willems A, Subba-Rao NS, Mateos PF, Dazzo FB, Kroppenstedt RM, Martinez-Molina E, Gillis M, Velazquez ESyst Appl Microbiol10.1078/0723202033223373082003Alphaproteobacteria/*classification/genetics/metabolism/ultrastructure, DNA Probes, Electrophoresis, Polyacrylamide Gel, Fabaceae/classification/*microbiology, Fatty Acids/analysis/chemistry, India, Molecular Sequence Data, *Nitrogen Fixation, Phenotype, Plant Roots/microbiology, Polymorphism, Restriction Fragment Length, Random Amplified Polymorphic DNA Technique, Symbiosis, *Water MicrobiologyEnzymology
Phylogeny19654342Devosia yakushimensis sp. nov., isolated from root nodules of Pueraria lobata (Willd.) Ohwi.Bautista VV, Monsalud RG, Yokota AInt J Syst Evol Microbiol10.1099/ijs.0.011254-02009DNA, Bacterial/genetics, DNA, Ribosomal/genetics, Fatty Acids/chemistry/metabolism, Hyphomicrobiaceae/*classification/genetics/*isolation & purification/metabolism, Molecular Sequence Data, Phylogeny, Pueraria/*microbiology, RNA, Ribosomal, 16S/genetics, Root Nodules, Plant/*microbiologyMetabolism

Reference

@idauthorstitledoi/urlcatalogue
20215Parte, A.C., Sardà Carbasse, J., Meier-Kolthoff, J.P., Reimer, L.C. and Göker, M.List of Prokaryotic names with Standing in Nomenclature (LPSN) moves to the DSMZ10.1099/ijsem.0.004332
33956Curators of the CIPhttps://catalogue-crbip.pasteur.fr/fiche_catalogue.xhtml?crbip=CIP%20108397Collection of Institut Pasteur (CIP 108397)
68382Automatically annotated from API zym
92519Reimer, L.C., Lissin, A.,Schober, I., Witte,J.F., Podstawka, A., Lüken, H., Bunk, B.,Overmann, J.StrainInfo: A central database for resolving microbial strain identifiers10.60712/SI-ID94677.1