Strain identifier

BacDive ID: 135095

Type strain: Yes

Species: Parvularcula bermudensis

Strain history: CIP <- 2004, J.C. Cho, Oregon state Univ., Corvallis, Oregon, USA: strain HTCC2503

NCBI tax ID(s): 208216 (species)

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General

@ref: 33927

BacDive-ID: 135095

keywords: Bacteria, mesophilic, Gram-negative, motile, oval-shaped

description: Parvularcula bermudensis CIP 108254 is a mesophilic, Gram-negative, motile bacterium of the family Parvularculaceae.

NCBI tax id

  • NCBI tax id: 208216
  • Matching level: species

strain history

@refhistory
339272004, J.C. Cho, Oregon state Univ., Corvallis, Oregon, USA: strain HTCC2503
33927CIP <- 2004, J.C. Cho, Oregon state Univ., Corvallis, Oregon, USA: strain HTCC2503

doi: 10.13145/bacdive135095.20230509.8.1

Name and taxonomic classification

LPSN

  • @ref: 20215
  • description: domain/bacteria
  • keyword: phylum/pseudomonadota
  • domain: Bacteria
  • phylum: Pseudomonadota
  • class: Alphaproteobacteria
  • order: Parvularculales
  • family: Parvularculaceae
  • genus: Parvularcula
  • species: Parvularcula bermudensis
  • full scientific name: Parvularcula bermudensis Cho and Giovannoni 2003

@ref: 33927

domain: Bacteria

phylum: Proteobacteria

class: Alphaproteobacteria

order: Parvularculales

family: Parvularculaceae

genus: Parvularcula

species: Parvularcula bermudensis

type strain: yes

Morphology

cell morphology

  • @ref: 33927
  • gram stain: negative
  • cell shape: oval-shaped
  • motility: yes

Culture and growth conditions

culture medium

@refnamegrowthcompositionlink
33927Marine agar (MA)yesDistilled water make up to (1000.000 ml);Marine agar (55.100 g)
33927CIP Medium 13yeshttps://catalogue-crbip.pasteur.fr/fiche_milieu.xhtml?crbip=13

culture temp

@refgrowthtypetemperaturerange
33927positivegrowth30mesophilic
33927positivegrowth5-41
33927nogrowth45thermophilic

Physiology and metabolism

halophily

@refsaltgrowthtested relationconcentration
33927NaClnogrowth0 %
33927NaClnogrowth2 %
33927NaClnogrowth4 %
33927NaClnogrowth6 %
33927NaClnogrowth8 %
33927NaClnogrowth10 %

metabolite utilization

@refChebi-IDmetaboliteutilization activitykind of utilization tested
339274853esculin-hydrolysis
33927606565hippurate-hydrolysis
3392717632nitrate+reduction
3392716301nitrite-reduction

metabolite production

  • @ref: 33927
  • Chebi-ID: 35581
  • metabolite: indole
  • production: no

metabolite tests

@refChebi-IDmetabolitevoges-proskauer-testmethylred-test
3392715688acetoin-
3392717234glucose-

enzymes

@refvalueactivityec
33927oxidase+
33927beta-galactosidase-3.2.1.23
33927alcohol dehydrogenase+1.1.1.1
33927gelatinase+
33927amylase-
33927caseinase-3.4.21.50
33927catalase+1.11.1.6
33927tween esterase-
33927gamma-glutamyltransferase-2.3.2.2
33927lecithinase-
33927lipase-
33927lysine decarboxylase-4.1.1.18
33927ornithine decarboxylase-4.1.1.17
33927phenylalanine ammonia-lyase-4.3.1.24
33927tryptophan deaminase-
33927urease+3.5.1.5
68382alkaline phosphatase+3.1.3.1
68382esterase (C 4)+
68382esterase lipase (C 8)+
68382lipase (C 14)-
68382leucine arylamidase+3.4.11.1
68382valine arylamidase+
68382cystine arylamidase-3.4.11.3
68382trypsin+3.4.21.4
68382alpha-chymotrypsin-3.4.21.1
68382acid phosphatase-3.1.3.2
68382naphthol-AS-BI-phosphohydrolase+
68382alpha-galactosidase-3.2.1.22
68382beta-galactosidase-3.2.1.23
68382beta-glucuronidase-3.2.1.31
68382alpha-glucosidase-3.2.1.20
68382beta-glucosidase-3.2.1.21
68382N-acetyl-beta-glucosaminidase-3.2.1.52
68382alpha-mannosidase-3.2.1.24
68382alpha-fucosidase-3.2.1.51

API zym

@refControlAlkaline phosphataseEsteraseEsterase LipaseLipaseLeucine arylamidaseValine arylamidaseCystine arylamidaseTrypsinalpha- ChymotrypsinAcid phosphataseNaphthol-AS-BI-phosphohydrolasealpha- Galactosidasebeta- Galactosidasebeta- Glucuronidasealpha- Glucosidasebeta- GlucosidaseN-acetyl-beta- glucosaminidasealpha- Mannosidasealpha- Fucosidase
33927-+++-++-+--+--------

Isolation, sampling and environmental information

isolation

@refcountrysample type
33927Atlantic ocean
33927Atlantic OceanEnvironment, Marine seawater

Safety information

risk assessment

  • @ref: 33927
  • biosafety level: 1
  • biosafety level comment: Risk group (French classification)

External links

@ref: 33927

culture collection no.: CIP 108254, ATCC BAA 594, KCTC 12087, HTCC 2503

straininfo link

  • @ref: 92516
  • straininfo: 107089

literature

  • topic: Phylogeny
  • Pubmed-ID: 12892122
  • title: Parvularcula bermudensis gen. nov., sp. nov., a marine bacterium that forms a deep branch in the alpha-Proteobacteria.
  • authors: Cho JC, Giovannoni SJ
  • journal: Int J Syst Evol Microbiol
  • DOI: 10.1099/ijs.0.02566-0
  • year: 2003
  • mesh: Alphaproteobacteria/*classification/genetics/isolation & purification/metabolism, Base Composition, Base Sequence, DNA, Bacterial/chemistry/genetics, DNA, Ribosomal/genetics, Microscopy, Electron, Molecular Sequence Data, Phenotype, Phylogeny, RNA, Bacterial/genetics, RNA, Ribosomal, 16S/genetics, Seawater/microbiology
  • topic2: Genetics

Reference

@idauthorstitledoi/urlcatalogue
20215Parte, A.C., Sardà Carbasse, J., Meier-Kolthoff, J.P., Reimer, L.C. and Göker, M.List of Prokaryotic names with Standing in Nomenclature (LPSN) moves to the DSMZ10.1099/ijsem.0.004332
33927Curators of the CIPhttps://catalogue-crbip.pasteur.fr/fiche_catalogue.xhtml?crbip=CIP%20108254Collection of Institut Pasteur (CIP 108254)
68382Automatically annotated from API zym
92516Reimer, L.C., Lissin, A.,Schober, I., Witte,J.F., Podstawka, A., Lüken, H., Bunk, B.,Overmann, J.StrainInfo: A central database for resolving microbial strain identifiers10.60712/SI-ID107089.1