Strain identifier

BacDive ID: 135085

Type strain: No

Species: Serratia bockelmannii

Strain Designation: Db1140

Strain history: CIP <- 2003, J. Ewbank, Marseille, France: strain Db1140 <- D. Ferrandon, Strasbourg <- H. Boman, Stockholm

NCBI tax ID(s): 615 (species)

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General

@ref: 33884

BacDive-ID: 135085

keywords: Bacteria, facultative anaerobe, mesophilic, Gram-negative, motile, rod-shaped

description: Serratia bockelmannii Db1140 is a facultative anaerobe, mesophilic, Gram-negative bacterium of the family Yersiniaceae.

NCBI tax id

  • NCBI tax id: 615
  • Matching level: species

strain history

  • @ref: 33884
  • history: CIP <- 2003, J. Ewbank, Marseille, France: strain Db1140 <- D. Ferrandon, Strasbourg <- H. Boman, Stockholm

doi: 10.13145/bacdive135085.20230509.8.1

Name and taxonomic classification

LPSN

  • @ref: 20215
  • description: domain/bacteria
  • keyword: phylum/pseudomonadota
  • domain: Bacteria
  • phylum: Pseudomonadota
  • class: Gammaproteobacteria
  • order: Enterobacterales
  • family: Yersiniaceae
  • genus: Serratia
  • species: Serratia bockelmannii
  • full scientific name: Serratia bockelmannii Cho et al. 2020

@ref: 33884

domain: Bacteria

phylum: Proteobacteria

class: Gammaproteobacteria

order: Enterobacterales

family: Yersiniaceae

genus: Serratia

species: Serratia bockelmannii

strain designation: Db1140

type strain: no

Morphology

cell morphology

  • @ref: 33884
  • gram stain: negative
  • cell shape: rod-shaped
  • motility: yes

Culture and growth conditions

culture medium

@refnamegrowthcompositionlink
33884MEDIUM 72- for trypto casein soja agaryesDistilled water make up to (1000.000 ml);Trypto casein soy agar (40.000 g)
33884CIP Medium 72yeshttps://catalogue-crbip.pasteur.fr/fiche_milieu.xhtml?crbip=72

culture temp

@refgrowthtypetemperaturerange
33884positivegrowth30mesophilic
33884positivegrowth10-37
33884nogrowth5psychrophilic
33884nogrowth41thermophilic

Physiology and metabolism

oxygen tolerance

  • @ref: 33884
  • oxygen tolerance: facultative anaerobe

metabolite utilization

@refChebi-IDmetaboliteutilization activitykind of utilization tested
3388429864mannitol+fermentation
3388416947citrate+carbon source
3388417234glucose+fermentation
3388417716lactose-fermentation
3388417632nitrate+reduction
3388416301nitrite+reduction
3388415792malonate-assimilation
33884132112sodium thiosulfate-builds gas from
3388417234glucose+degradation

antibiotic resistance

  • @ref: 33884
  • metabolite: 0129 (2,4-Diamino-6,7-di-iso-propylpteridine phosphate)
  • is antibiotic: yes
  • is sensitive: no
  • is resistant: yes

metabolite production

  • @ref: 33884
  • Chebi-ID: 35581
  • metabolite: indole
  • production: no

metabolite tests

@refChebi-IDmetabolitevoges-proskauer-testmethylred-test
3388415688acetoin+
3388417234glucose-

enzymes

@refvalueactivityec
33884oxidase-
33884beta-galactosidase+3.2.1.23
33884alcohol dehydrogenase-1.1.1.1
33884gelatinase-
33884catalase+1.11.1.6
33884lysine decarboxylase+4.1.1.18
33884ornithine decarboxylase+4.1.1.17
33884phenylalanine ammonia-lyase-4.3.1.24
33884tryptophan deaminase-
33884urease-3.5.1.5
68382alkaline phosphatase+3.1.3.1
68382esterase (C 4)+
68382esterase lipase (C 8)+
68382lipase (C 14)-
68382leucine arylamidase+3.4.11.1
68382valine arylamidase+
68382cystine arylamidase-3.4.11.3
68382trypsin+3.4.21.4
68382alpha-chymotrypsin-3.4.21.1
68382acid phosphatase+3.1.3.2
68382naphthol-AS-BI-phosphohydrolase+
68382alpha-galactosidase-3.2.1.22
68382beta-galactosidase+3.2.1.23
68382beta-glucuronidase-3.2.1.31
68382alpha-glucosidase+3.2.1.20
68382beta-glucosidase+3.2.1.21
68382N-acetyl-beta-glucosaminidase+3.2.1.52
68382alpha-mannosidase-3.2.1.24
68382alpha-fucosidase-3.2.1.51

API zym

@refControlAlkaline phosphataseEsteraseEsterase LipaseLipaseLeucine arylamidaseValine arylamidaseCystine arylamidaseTrypsinalpha- ChymotrypsinAcid phosphataseNaphthol-AS-BI-phosphohydrolasealpha- Galactosidasebeta- Galactosidasebeta- Glucuronidasealpha- Glucosidasebeta- GlucosidaseN-acetyl-beta- glucosaminidasealpha- Mannosidasealpha- Fucosidase
33884-+++-++-+-++-+-+++--

API biotype100

@refGLUFRUGALTREMNESBEMELSACRAFMTEMALLACLTEMbGaMaGaCELGENMbGuESCRIBARAXYLPLERHAFUCMLZDARLLARLXLTDULTAGGLYINOMANMTLTURSORADOHBGLYXERYMDG3MDGSATMUCLTATDTATMTATDMLTLMLTCATETATETTECITGRTGAT2KG5KGTRYNAGGNTPACPATpOBEQATGTEmOBEBATPPATCMTTGEBETPCEABTHINLATCAPCYTHISSUCFUMGREGYTAVTETNTTNGLNITA3OBUAPTGTTPRODALALALASERMNTPROPTYR2KT
33884+++++--+-++------+++----+--++--+++--++-++------+++++-+++++-+++---+------++-+++-++-+---+--++++++---+

Isolation, sampling and environmental information

isolation

@refcountryorigin.countrycontinentsample typeisolation date
33884SwedenSWEEurope
33884SwedenSWEEuropeMutant strain SmR derivated from Db111980

Safety information

risk assessment

  • @ref: 33884
  • biosafety level: 1
  • biosafety level comment: Risk group (French classification)

External links

@ref: 33884

culture collection no.: CIP 108084

Reference

@idauthorstitledoi/urlcatalogue
20215Parte, A.C., Sardà Carbasse, J., Meier-Kolthoff, J.P., Reimer, L.C. and Göker, M.List of Prokaryotic names with Standing in Nomenclature (LPSN) moves to the DSMZ10.1099/ijsem.0.004332
33884Curators of the CIPhttps://catalogue-crbip.pasteur.fr/fiche_catalogue.xhtml?crbip=CIP%20108084Collection of Institut Pasteur (CIP 108084)
68382Automatically annotated from API zym