Strain identifier

BacDive ID: 135083

Type strain: Yes

Species: Paracoccus kondratievae

Strain Designation: GB

Strain history: CIP <- 2003, N.V. Doronina, VKM, Moscow, Russia: strain GB

NCBI tax ID(s): 135740 (species)

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General

@ref: 33877

BacDive-ID: 135083

keywords: Bacteria, obligate aerobe, thermophilic, Gram-negative, rod-shaped

description: Paracoccus kondratievae GB is an obligate aerobe, thermophilic, Gram-negative bacterium of the family Paracoccaceae.

NCBI tax id

  • NCBI tax id: 135740
  • Matching level: species

strain history

@refhistory
338772003, N.V. Doronina, VKM, Moscow, Russia: strain GB
33877CIP <- 2003, N.V. Doronina, VKM, Moscow, Russia: strain GB

doi: 10.13145/bacdive135083.20230509.8.1

Name and taxonomic classification

LPSN

  • @ref: 20215
  • description: domain/bacteria
  • keyword: phylum/pseudomonadota
  • domain: Bacteria
  • phylum: Pseudomonadota
  • class: Alphaproteobacteria
  • order: Rhodobacterales
  • family: Paracoccaceae
  • genus: Paracoccus
  • species: Paracoccus kondratievae
  • full scientific name: Paracoccus kondratievae Doronina and Trotsenko 2001

@ref: 33877

domain: Bacteria

phylum: Proteobacteria

class: Alphaproteobacteria

order: Rhodobacterales

family: Rhodobacteraceae

genus: Paracoccus

species: Paracoccus kondratievae

strain designation: GB

type strain: yes

Morphology

cell morphology

  • @ref: 33877
  • gram stain: negative
  • cell shape: rod-shaped
  • motility: no

Culture and growth conditions

culture medium

@refnamegrowthcompositionlink
33877MEDIUM 72- for trypto casein soja agaryesDistilled water make up to (1000.000 ml);Trypto casein soy agar (40.000 g)
33877CIP Medium 573yeshttps://catalogue-crbip.pasteur.fr/fiche_milieu.xhtml?crbip=573
33877CIP Medium 72yeshttps://catalogue-crbip.pasteur.fr/fiche_milieu.xhtml?crbip=72

culture temp

@refgrowthtypetemperaturerange
33877positivegrowth40thermophilic
33877positivegrowth25-41
33877nogrowth5psychrophilic
33877nogrowth10psychrophilic

Physiology and metabolism

oxygen tolerance

  • @ref: 33877
  • oxygen tolerance: obligate aerobe

halophily

@refsaltgrowthtested relationconcentration
33877NaClpositivegrowth0-8 %
33877NaClnogrowth10 %

metabolite utilization

@refChebi-IDmetaboliteutilization activitykind of utilization tested
338774853esculin-hydrolysis
3387717632nitrate+reduction
3387716301nitrite+reduction
3387717632nitrate+respiration

antibiotic resistance

  • @ref: 33877
  • metabolite: 0129 (2,4-Diamino-6,7-di-iso-propylpteridine phosphate)
  • is antibiotic: yes
  • is sensitive: no
  • is resistant: yes

metabolite production

  • @ref: 33877
  • Chebi-ID: 35581
  • metabolite: indole
  • production: no

metabolite tests

  • @ref: 33877
  • Chebi-ID: 15688
  • metabolite: acetoin
  • voges-proskauer-test: -

enzymes

@refvalueactivityec
33877oxidase+
33877beta-galactosidase-3.2.1.23
33877alcohol dehydrogenase-1.1.1.1
33877gelatinase-
33877amylase-
33877DNase-
33877caseinase-3.4.21.50
33877catalase+1.11.1.6
33877tween esterase-
33877lecithinase-
33877lipase-
33877lysine decarboxylase-4.1.1.18
33877ornithine decarboxylase-4.1.1.17
33877protease-
33877tryptophan deaminase-
33877urease+3.5.1.5
68382alkaline phosphatase+3.1.3.1
68382esterase (C 4)+
68382esterase lipase (C 8)+
68382lipase (C 14)-
68382leucine arylamidase+3.4.11.1
68382valine arylamidase+
68382cystine arylamidase-3.4.11.3
68382trypsin-3.4.21.4
68382alpha-chymotrypsin-3.4.21.1
68382acid phosphatase+3.1.3.2
68382naphthol-AS-BI-phosphohydrolase+
68382alpha-galactosidase-3.2.1.22
68382beta-galactosidase-3.2.1.23
68382beta-glucuronidase-3.2.1.31
68382alpha-glucosidase-3.2.1.20
68382beta-glucosidase-3.2.1.21
68382N-acetyl-beta-glucosaminidase-3.2.1.52
68382alpha-mannosidase-3.2.1.24
68382alpha-fucosidase-3.2.1.51

API zym

@refControlAlkaline phosphataseEsteraseEsterase LipaseLipaseLeucine arylamidaseValine arylamidaseCystine arylamidaseTrypsinalpha- ChymotrypsinAcid phosphataseNaphthol-AS-BI-phosphohydrolasealpha- Galactosidasebeta- Galactosidasebeta- Glucuronidasealpha- Glucosidasebeta- GlucosidaseN-acetyl-beta- glucosaminidasealpha- Mannosidasealpha- Fucosidase
33877-+++-++---++--------

API biotype100

@refGLUFRUGALTREMNESBEMELSACRAFMTEMALLACLTEMbGaMaGaCELGENMbGuESCRIBARAXYLPLERHAFUCMLZDARLLARLXLTDULTAGGLYINOMANMTLTURSORADOHBGLYXERYMDG3MDGSATMUCLTATDTATMTATDMLTLMLTCATETATETTECITGRTGAT2KG5KGTRYNAGGNTPACPATpOBEQATGTEmOBEBATPPATCMTTGEBETPCEABTHINLATCAPCYTHISSUCFUMGREGYTAVTETNTTNGLNITA3OBUAPTGTTPRODALALALASERMNTPROPTYR2KT
33877++--+--------------++-----+++-++++--++-+--------++----++++-++----------+-+-+---++-++----+++++++++--

Isolation, sampling and environmental information

isolation

@refgeographic locationcountryorigin.countrycontinentsample typeisolation date
33877Krasnodar regionRussiaRUSEurope
33877Krasnodar regionRussian FederationRUSEuropePlant, Maize rhizosphere2000

Safety information

risk assessment

  • @ref: 33877
  • biosafety level: 1
  • biosafety level comment: Risk group (French classification)

External links

@ref: 33877

culture collection no.: CIP 108054, VKM B-2222, NCIMB 13773

straininfo link

  • @ref: 92506
  • straininfo: 100844

literature

topicPubmed-IDtitleauthorsjournalDOIyearmeshtopic2
Phylogeny11931183Emended description of Paracoccus kondratievae.Doronina NV, Trotsenko YA, Kuznetzov BB, Tourova TPInt J Syst Evol Microbiol10.1099/00207713-52-2-6792002Genotype, Methanol/metabolism, Molecular Sequence Data, Paracoccus/*classification/isolation & purification/physiology, Phenotype, Phylogeny, Plant Roots/microbiology, RNA, Bacterial/chemistry, RNA, Ribosomal, 16S/chemistry, Zea mays/*microbiologyGenetics
Genetics25752994Maintenance and genetic load of plasmid pKON1 of Paracoccus kondratievae, containing a highly efficient toxin-antitoxin module of the hipAB family.Czarnecki J, Dziewit L, Kowalski L, Ochnio M, Bartosik DPlasmid10.1016/j.plasmid.2015.02.0032015Amino Acid Sequence, Bacterial Toxins/*genetics, Base Composition, Base Sequence, Chromosomes, Bacterial/genetics, Genetic Loci, Molecular Sequence Data, Paracoccus/*genetics, Plasmids/*genetics, Replicon, Sequence Analysis, DNATranscriptome
Phylogeny33774710Paracoccus binzhouensis sp. nov., isolated from activated sludge.Wang F, Gong XF, Meng D, Liu YL, Gu PF, Fan XY, Huang ZS, Du ZJ, Li QArch Microbiol10.1007/s00203-021-02286-72021Bacterial Typing Techniques, China, DNA, Bacterial/genetics, Fatty Acids/analysis, *Paracoccus/classification/genetics/isolation & purification, Phospholipids/analysis, Phylogeny, RNA, Ribosomal, 16S/genetics, Sequence Analysis, DNA, *Sewage/microbiology, Species SpecificityTranscriptome

Reference

@idauthorstitledoi/urlcatalogue
20215Parte, A.C., Sardà Carbasse, J., Meier-Kolthoff, J.P., Reimer, L.C. and Göker, M.List of Prokaryotic names with Standing in Nomenclature (LPSN) moves to the DSMZ10.1099/ijsem.0.004332
33877Curators of the CIPhttps://catalogue-crbip.pasteur.fr/fiche_catalogue.xhtml?crbip=CIP%20108054Collection of Institut Pasteur (CIP 108054)
68382Automatically annotated from API zym
92506Reimer, L.C., Lissin, A.,Schober, I., Witte,J.F., Podstawka, A., Lüken, H., Bunk, B.,Overmann, J.StrainInfo: A central database for resolving microbial strain identifiers10.60712/SI-ID100844.1