Strain identifier

BacDive ID: 13508

Type strain: Yes

Species: Goodfellowiella coeruleoviolacea

Strain history: IFO 14988 <-- VKM Ac-1083 <-- INA 3564.

NCBI tax ID(s): 334858 (species)

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General

@ref: 11385

BacDive-ID: 13508

DSM-Number: 43935

keywords: genome sequence, 16S sequence, Bacteria, aerobe, spore-forming, mesophilic, Gram-positive, rod-shaped

description: Goodfellowiella coeruleoviolacea DSM 43935 is an aerobe, spore-forming, mesophilic bacterium that builds an aerial mycelium and was isolated from soil.

NCBI tax id

  • NCBI tax id: 334858
  • Matching level: species

strain history

@refhistory
11385<- L.V. Kalakoutskii, VKM <- Preobrazhenskaya, INA
67770IFO 14988 <-- VKM Ac-1083 <-- INA 3564.

doi: 10.13145/bacdive13508.20230509.8.1

Name and taxonomic classification

LPSN

  • @ref: 20215
  • description: domain/bacteria
  • keyword: phylum/actinomycetota
  • domain: Bacteria
  • phylum: Actinomycetota
  • class: Actinomycetes
  • order: Pseudonocardiales
  • family: Pseudonocardiaceae
  • genus: Goodfellowiella
  • species: Goodfellowiella coeruleoviolacea
  • full scientific name: Goodfellowiella coeruleoviolacea (Preobrazhenskaya and Terekhova 1987) Labeda et al. 2008

  • synonyms

    @refsynonym
    20215Actinomadura coeruleoviolacea
    20215Goodfellowia coeruleoviolacea
    20215Saccharothrix coeruleoviolacea

@ref: 11385

domain: Bacteria

phylum: Actinobacteria

class: Actinobacteria

order: Actinomycetales

family: Pseudonocardiaceae

genus: Goodfellowiella

species: Goodfellowiella coeruleoviolacea

full scientific name: Goodfellowiella coeruleoviolacea (Preobrazhenskaya and Terekhova 1987) Labeda et al. 2008 emend. Nouioui et al. 2018

type strain: yes

Morphology

cell morphology

@refgram staincell widthcell shapemotilityconfidence
31745positive0.5 µmrod-shapedno
69480no91.886
69480positive100

colony morphology

@refcolony colorincubation periodmedium used
19839Pastel orange10-14 daysISP 2
19839Traffic purple10-14 daysISP 3
1983910-14 daysISP 4
1983910-14 daysISP 5
19839Purple violet10-14 daysISP 6
1983910-14 daysISP 7

multicellular morphology

@refforms multicellular complexcomplex namecomplex colormedium name
19839yesAerial MyceliumWhiteISP 2
19839yesAerial MyceliumReseda green (6011)ISP 3
19839yesAerial MyceliumReseda green (6011)ISP 4
19839noISP 5
19839noISP 6
19839yesAerial MyceliumReseda green (6011)ISP 7

pigmentation

  • @ref: 31745
  • production: yes

multimedia

@refmultimedia contentintellectual property rightscaption
11385https://www.dsmz.de/microorganisms/photos/DSM_43935-1.jpg© Leibniz-Institut DSMZ
11385https://www.dsmz.de/microorganisms/photos/DSM_43935.jpg© Leibniz-Institut DSMZMedium 65 28°C

Culture and growth conditions

culture medium

@refnamegrowthlinkcomposition
11385N-Z-AMINE-MEDIUM (DSMZ Medium 554)yeshttps://mediadive.dsmz.de/medium/554Name: N-Z-AMINE-MEDIUM (DSMZ Medium 554) Composition: Starch 20.0 g/l Agar 20.0 g/l Glucose 10.0 g/l N-Z amine 5.0 g/l Yeast extract 5.0 g/l CaCO3 1.0 g/l Distilled water
11385GYM STREPTOMYCES MEDIUM (DSMZ Medium 65)yeshttps://mediadive.dsmz.de/medium/65Name: GYM STREPTOMYCES MEDIUM (DSMZ Medium 65) Composition: Agar 18.0 g/l Malt extract 10.0 g/l Yeast extract 4.0 g/l Glucose 4.0 g/l CaCO3 2.0 g/l Distilled water
19839ISP 2yesName: ISP 2 / Yeast Malt Agar (5265); 5265 Composition Malt extract 10.0 g/l Yeast extract 4.0 g/l Glucose 4.0 g/l Agar 15.0 g/l Preparation: Sterilisation: 20 minutes at 121°C pH before sterilisation: 7.0 Usage: Maintenance and Taxonomy Organisms: All Actinomycetes
19839ISP 3yesName: ISP 3; 5315 Composition Dog oat flakes 20.0 g/l Trace element solution (5314) 2.5 ml/l Agar 18.0 g/l Preparation: Oat flakes are cooked for 20 minutes, trace element solution and agar are added (in the case of non rolled oat flakes the suspension has to bee filtrated). Sterilisation: 20 minutes at 121°C pH before sterilisation: 7.8 Usage: Maintenance and taxonomy (e.g. SEM As liquid medium for metabolite production) Organisms: All Actinomycetes Trace element solution 5314 Name: Trace element solution 5314; 5314 Composition CaCl2 x H2O 3.0 g/l Fe-III-citrate 1.0 g/l MnSO4 0.2 g/l ZnCl2 0.1 g/l CuSO4 x 5 H2O 0.025 g/l Sodium tetra borate 0.2 g/l CoCl2 x 6 H2O 0.004 g/l Sodium molybdate 0.01 g/l Preparation: Use double destillated water. Sterilisation: 20 minutes at 121°C pH before sterilisation: Usage: Trace element solution for different media Organisms:
19839ISP 4yesName: ISP 4; DSM 547 Solution I: Difco soluble starch, 10.0 g. Make a paste of the starch with a small amount of cold distilled water and bring to a volume of 500 ml. Solution II: CaCO3 2.0 g K2HPO4 (anhydrous) 1.0 g MgSO4 x 7 H2O 1.0 g NaCl 1.0 g (NH4)2SO4 2.0 g Distilled water 500.0 ml Trace salt solution (see below) 1.0 ml The pH should be between 7.0 and 7.4. Do not adjust if it is within this range. Mix solutions I and II together. Add 20.0 g agar. Liquify agar by steaming at 100°C for 10 to 20 min. Trace element solution: FeSO4 x 7 H2O 0.1 g MnCl2 x 4 H2O 0.1 g ZnSO4 x 7 H2O 0.1 g Distilled water 100.0 ml
19839ISP 5yesName: ISP 5 (5323) Composition L-Asparagine 1.0 g/l Glycerol 10.0 g/l K2HPO4 1.0 g/l Salt solution (see preparation) 1.0 ml/l Agar 20.0 g/l Preparation: Salt solution 1.0 g FeSO4 x 7 H2O 1.0 g MnCl2 x 4 H2O 1.0 g ZNSO4 x 7 H2O in 100 ml water Sterilisation: 20 minutes at 121°C pH before sterilisation: 7.2 Usage: Maintenance and taxonomy Organisms: All Actinomycetes
19839ISP 6yesName: ISP 6 (5318) Composition Peptone 15.0 g/l Proteose peptose 5.0 g/l Ferric ammonium citrate 0.5 g/l Sodium glycerophosphate 1.0 g/l Sodium thiosulfate 0.08 g/l Yeast extract 1.0 g/l Agar 15.0 g/l Sterilisation: 20 minutes at 121°C pH before sterilisation: Usage: Production of melanoid pigments Organisms: All Actinomycetes
19839ISP 7yesName: ISP 7 (5322) Composition Glycerol 15.0 g/l L-Tyrosine 0.5 g/l L-Asparagine 1.0 g/l K2HPO4 0.5 g/l NaCl 0.5 g/l FeSO4 x 7 H2O 0.01 g/l Trace element solution 5343 1.0 ml/l Agar 20.0 Sterilisation: 20 minutes at 121°C pH before sterilisation: 7.3 Usage: Production of melanoid pigments Organisms: All Actinomycetes

culture temp

@refgrowthtypetemperaturerange
11385positivegrowth28mesophilic
19839positiveoptimum37mesophilic
31745positivegrowth15-45
31745positiveoptimum30mesophilic
67770positivegrowth28mesophilic

Physiology and metabolism

oxygen tolerance

  • @ref: 31745
  • oxygen tolerance: aerobe

spore formation

@refspore formationconfidence
31745yes
69481yes100
69480yes100

halophily

@refsaltgrowthtested relationconcentration
19839NaClpositivemaximum2.5 %
31745NaClpositivegrowth4 %
31745NaClpositiveoptimum4 %

observation

@refobservation
31745aggregates in chains
67770quinones: MK-9(H4), MK-10(H4)

metabolite utilization

@refChebi-IDmetaboliteutilization activitykind of utilization tested
3174530089acetate+carbon source
3174516947citrate+carbon source
3174525115malate+carbon source
3174517272propionate+carbon source
3174530031succinate+carbon source
317454853esculin+hydrolysis
3174517632nitrate+reduction
6836817632nitrate-reduction
6836830849L-arabinose-fermentation
6836827613amygdalin-fermentation
6836828053melibiose-fermentation
6836817992sucrose-fermentation
6836862345L-rhamnose-fermentation
6836830911sorbitol-fermentation
6836817268myo-inositol-fermentation
6836816899D-mannitol-fermentation
6836817634D-glucose-fermentation
683685291gelatin+hydrolysis
6836827897tryptophan-energy source

metabolite production

@refChebi-IDmetaboliteproduction
6836817997dinitrogenno
6836816301nitriteno
6836815688acetoinyes
6836835581indoleno
6836816136hydrogen sulfideno

metabolite tests

@refChebi-IDmetabolitevoges-proskauer-testindole test
6836815688acetoin+
6836835581indole-

enzymes

@refvalueactivityec
31745catalase+1.11.1.6
68368gelatinase+
68368tryptophan deaminase-4.1.99.1
68368beta-galactosidase+3.2.1.23
68382leucine arylamidase+3.4.11.1
68382valine arylamidase+
68382trypsin+3.4.21.4
68382alpha-chymotrypsin-3.4.21.1
68382acid phosphatase+3.1.3.2
68382alpha-galactosidase+3.2.1.22
68382beta-galactosidase+3.2.1.23
68382beta-glucuronidase-3.2.1.31
68382alpha-glucosidase+3.2.1.20
68382N-acetyl-beta-glucosaminidase+3.2.1.52
68382alpha-fucosidase-3.2.1.51

API zym

@refAlkaline phosphataseEsteraseEsterase LipaseLipaseLeucine arylamidaseValine arylamidaseCystine arylamidaseTrypsinalpha- ChymotrypsinAcid phosphataseNaphthol-AS-BI-phosphohydrolasealpha- Galactosidasebeta- Galactosidasebeta- Glucuronidasealpha- Glucosidasebeta- GlucosidaseN-acetyl-beta- glucosaminidasealpha- Mannosidasealpha- FucosidaseControl
19839-+++++++-+-++-++++-
11385+---+++/-+-++/-++-+-+---

API 20E

@refONPGADH ArgLDC LysODCCITH2SURETDA TrpINDVPGELGLUMANINOSorRHASACMELAMYARANO2N2
19839+++++-+--++
11385+--------++-----------

Isolation, sampling and environmental information

isolation

@refsample typecountryorigin.country
11385soilRussiaRUS
67770Soil

isolation source categories

  • Cat1: #Environmental
  • Cat2: #Terrestrial
  • Cat3: #Soil

taxonmaps

  • @ref: 69479
  • File name: preview.99_37755.png
  • url: https://microbeatlas.org/index.html?action=taxon&taxon_id=90_10;96_14946;97_22095;98_27752;99_37755&stattab=map
  • Last taxonomy: Goodfellowiella coeruleoviolacea subclade
  • 16S sequence: AB297963
  • Sequence Identity:
  • Total samples: 396
  • soil counts: 317
  • aquatic counts: 24
  • animal counts: 21
  • plant counts: 34

Safety information

risk assessment

@refbiosafety levelbiosafety level comment
113851Risk group (German classification)
198391Risk group (German classification)

Sequence information

16S sequences

@refdescriptionaccessionlengthdatabaseNCBI tax ID
20218Goodfellowia coeruleoviolacea gene for 16S rRNA, partial sequenceAB2979631470ena334858
20218Goodfellowia coeruleoviolacea gene for 16S rRNA, partial sequence, strain: NBRC 14988AB3272581470ena334858
11385Goodfellowiella coeruleoviolacea strain NRRL B-24058 16S ribosomal RNA gene, complete sequenceDQ0933491497ena334858

Genome sequences

@refdescriptionaccessionassembly leveldatabaseNCBI tax ID
66792Goodfellowiella coeruleoviolacea DSM 439352596583534draftimg334858
67770Goodfellowiella coeruleoviolacea NRRL B-24058GCA_000715825scaffoldncbi334858
66792Goodfellowiella coeruleoviolacea DSM 43935GCA_024171785scaffoldncbi334858

GC content

@refGC-contentmethod
3174568.2
6777068.2thermal denaturation, midpoint method (Tm)
6777072.4genome sequence analysis

Genome-based predictions

predictions

  • trait: spore-forming
  • prediction: yes
  • confidence: 100
  • training_data: no

External links

@ref: 11385

culture collection no.: DSM 43935, CIP 109303, INA 3564, JCM 9110, NBRC 14988, NRRL B-24058, VKM Ac-1083, CGMCC 4.1709, IFO 14988, IMSNU 20127, KCTC 9390

straininfo link

  • @ref: 82700
  • straininfo: 50461

literature

topicPubmed-IDtitleauthorsjournalDOIyearmeshtopic2
Phylogeny16738092Goodfellowia gen. nov., a new genus of the Pseudonocardineae related to Actinoalloteichus, containing Goodfellowia coeruleoviolacea gen. nov., comb. nov.Labeda DP, Kroppenstedt RMInt J Syst Evol Microbiol10.1099/ijs.0.64170-02006Actinomycetales/*classification/genetics/isolation & purification/physiology/ultrastructure, Chemotaxis, Microscopy, Electron, Scanning, Molecular Sequence Data, PhylogenyGenetics
Phylogeny35212620Solihabitans fulvus gen. nov., sp. nov., a member of the family Pseudonocardiaceae isolated from soil.Jin CZ, Jin L, Liu MJ, Lee JM, Park DJ, Kim CJInt J Syst Evol Microbiol10.1099/ijsem.0.0051102022Actinobacteria/*classification/isolation & purification, Bacterial Typing Techniques, Base Composition, DNA, Bacterial/genetics, Fatty Acids/chemistry, Phospholipids/chemistry, *Phylogeny, RNA, Ribosomal, 16S/genetics, Republic of Korea, Sequence Analysis, DNA, *Soil Microbiology, Vitamin K 2/chemistryTranscriptome

Reference

@idauthorscataloguedoi/urltitlejournalpubmedID_cross_reference
11385Curators of the DSMZLeibniz Institut DSMZ-Deutsche Sammlung von Mikroorganismen und Zellkulturen GmbH (DSM 43935)https://www.dsmz.de/collection/catalogue/details/culture/DSM-43935
19839Wink, J.http://www.dsmz.de/microorganisms/wink_pdf/DSM43935.pdfCompendium of Actinobacteria. HZI-Helmholtz-Centre for Infection Research, Braunschweig
20215Parte, A.C., Sardà Carbasse, J., Meier-Kolthoff, J.P., Reimer, L.C. and Göker, M.10.1099/ijsem.0.004332List of Prokaryotic names with Standing in Nomenclature (LPSN) moves to the DSMZ
20218Verslyppe, B., De Smet, W., De Baets, B., De Vos, P., Dawyndt P.10.1016/j.syapm.2013.11.002StrainInfo introduces electronic passports for microorganisms.Syst Appl Microbiol. 37: 42-50 201424321274
31745Barberan A, Caceres Velazquez H, Jones S, Fierer N.10.1128/mSphere.00237-17Hiding in Plain Sight: Mining Bacterial Species Records for Phenotypic Trait Information2877604128019
66792Julia Koblitz, Joaquim Sardà, Lorenz Christian Reimer, Boyke Bunk, Jörg Overmannhttps://diaspora-project.de/progress.html#genomesAutomatically annotated for the DiASPora project (Digital Approaches for the Synthesis of Poorly Accessible Biodiversity Information)
67770Curators of the JCMhttps://jcm.brc.riken.jp/en/
68368Automatically annotated from API 20E
68382Automatically annotated from API zym
69479João F Matias Rodrigues, Janko Tackmann,Gregor Rot, Thomas SB Schmidt, Lukas Malfertheiner, Mihai Danaila,Marija Dmitrijeva, Daniela Gaio, Nicolas Näpflin and Christian von Mering. University of Zurich.https://microbeatlas.org/MicrobeAtlas 1.0 beta
69480Julia Koblitz, Joaquim Sardà, Lorenz Christian Reimer, Boyke Bunk, Jörg Overmannhttps://diaspora-project.de/progress.html#genomesPredictions based on genome sequence made in the Diaspora project (Digital Approaches for the Synthesis of Poorly Accessible Biodiversity Information)
69481Xiao-Yin To, René Mreches, Martin Binder, Alice C. McHardy, Philipp C. Münch10.21203/rs.3.rs-2527258/v1Predictions based on the model GenomeNet Sporulation v. 1
82700Reimer, L.C., Lissin, A.,Schober, I., Witte,J.F., Podstawka, A., Lüken, H., Bunk, B.,Overmann, J.10.60712/SI-ID50461.1StrainInfo: A central database for resolving microbial strain identifiers