Strain identifier
BacDive ID: 13507
Type strain: 
Species: Actinomycetospora iriomotensis
Strain Designation: IR73-Li102
Strain history: <- T Tamura, NBRC <- M Hayakawa, Univ. Yamanashi
NCBI tax ID(s): 878213 (species)
version 8.1 (current version)
General
@ref: 18277
BacDive-ID: 13507
DSM-Number: 45811
keywords: 16S sequence, Bacteria, aerobe, mesophilic, Gram-positive
description: Actinomycetospora iriomotensis IR73-Li102 is an aerobe, mesophilic, Gram-positive bacterium that was isolated from crustose lichen sample.
NCBI tax id
- NCBI tax id: 878213
- Matching level: species
strain history
| @ref | history |
|---|---|
| 18277 | <- KCTC; KCTC 19783 <- T. Tamura, NBRC <- M. Hayakawa, Univ. Yamanashi |
| 67771 | <- T Tamura, NBRC <- M Hayakawa, Univ. Yamanashi |
doi: 10.13145/bacdive13507.20230509.8.1
Name and taxonomic classification
LPSN
- @ref: 20215
- description: domain/bacteria
- keyword: phylum/actinomycetota
- domain: Bacteria
- phylum: Actinomycetota
- class: Actinomycetes
- order: Pseudonocardiales
- family: Pseudonocardiaceae
- genus: Actinomycetospora
- species: Actinomycetospora iriomotensis
- full scientific name: Actinomycetospora iriomotensis Yamamura et al. 2011
@ref: 18277
domain: Bacteria
phylum: Actinobacteria
class: Actinobacteria
order: Actinomycetales
family: Pseudonocardiaceae
genus: Actinomycetospora
species: Actinomycetospora iriomotensis
full scientific name: Actinomycetospora iriomotensis Yamamura et al. 2011
strain designation: IR73-Li102
type strain: yes
Morphology
cell morphology
- @ref: 67771
- gram stain: positive
Culture and growth conditions
culture medium
- @ref: 18277
- name: GYM STREPTOMYCES MEDIUM (DSMZ Medium 65)
- growth: yes
- link: https://mediadive.dsmz.de/medium/65
- composition: Name: GYM STREPTOMYCES MEDIUM (DSMZ Medium 65) Composition: Agar 18.0 g/l Malt extract 10.0 g/l Yeast extract 4.0 g/l Glucose 4.0 g/l CaCO3 2.0 g/l Distilled water
culture temp
| @ref | growth | type | temperature | range |
|---|---|---|---|---|
| 18277 | positive | growth | 28 | mesophilic |
| 67771 | positive | growth | 28 | mesophilic |
Physiology and metabolism
oxygen tolerance
- @ref: 67771
- oxygen tolerance: aerobe
Isolation, sampling and environmental information
isolation
| @ref | sample type | geographic location | country | origin.country | continent |
|---|---|---|---|---|---|
| 18277 | crustose lichen sample | Hokkaido, Rishiri | Japan | JPN | Asia |
| 67771 | From lichen | Rishiri, Hokkaido | Japan | JPN | Asia |
isolation source categories
- Cat1: #Host
- Cat2: #Other
- Cat3: #Lichen
taxonmaps
- @ref: 69479
- File name: preview.99_130073.png
- url: https://microbeatlas.org/index.html?action=taxon&taxon_id=90_10;96_289;97_319;98_76753;99_130073&stattab=map
- Last taxonomy: Actinomycetospora iriomotensis
- 16S sequence: AB581531
- Sequence Identity:
- Total samples: 190
- soil counts: 92
- aquatic counts: 51
- animal counts: 33
- plant counts: 14
Safety information
risk assessment
- @ref: 18277
- biosafety level: 1
- biosafety level comment: Risk group (German classification)
Sequence information
16S sequences
- @ref: 18277
- description: Actinomycetospora iriomotensis gene for 16S ribosomal RNA, partial sequence
- accession: AB581531
- length: 1428
- database: ena
- NCBI tax ID: 878213
GC content
- @ref: 18277
- GC-content: 74
- method: high performance liquid chromatography (HPLC)
External links
@ref: 18277
culture collection no.: DSM 45811, KCTC 19783, NBRC 106365
straininfo link
- @ref: 82699
- straininfo: 399084
literature
| topic | Pubmed-ID | title | authors | journal | DOI | year | mesh | topic2 |
|---|---|---|---|---|---|---|---|---|
| Phylogeny | 21386850 | Actinomycetospora iriomotensis sp. nov., a novel actinomycete isolated from a lichen sample. | Yamamura H, Ashizawa H, Nakagawa Y, Hamada M, Ishida Y, Otoguro M, Tamura T, Hayakawa M | J Antibiot (Tokyo) | 10.1038/ja.2011.15 | 2011 | Actinobacteria/*classification/genetics/isolation & purification, *DNA, Bacterial, Japan, Lichens/*microbiology, Molecular Sequence Data, Nucleic Acid Hybridization/methods, Phenotype, Phylogeny, RNA, Bacterial, *RNA, Ribosomal, 16S, Sequence Analysis, RNA | Genetics |
| Phylogeny | 24573328 | Actinomycetospora atypica sp. nov., a novel soil actinomycete and emended description of the genus Actinomycetospora. | Zhang Y, Liu C, Zhang J, Shen Y, Li C, He H, Wang X, Xiang W | Antonie Van Leeuwenhoek | 10.1007/s10482-014-0143-2 | 2014 | Actinomycetales/*classification/genetics/*isolation & purification/physiology, Bacterial Typing Techniques, China, Cluster Analysis, DNA, Bacterial/chemistry/genetics, DNA, Ribosomal/chemistry/genetics, Microscopy, Electron, Scanning, Molecular Sequence Data, Nucleic Acid Hybridization, Peptidoglycan/chemistry, Phospholipids/analysis, Phylogeny, Quinones/analysis, RNA, Ribosomal, 16S/genetics, Sequence Analysis, DNA, *Soil Microbiology | Genetics |
Reference
| @id | authors | catalogue | doi/url | title |
|---|---|---|---|---|
| 18277 | Curators of the DSMZ | Leibniz Institut DSMZ-Deutsche Sammlung von Mikroorganismen und Zellkulturen GmbH (DSM 45811) | https://www.dsmz.de/collection/catalogue/details/culture/DSM-45811 | |
| 20215 | Parte, A.C., Sardà Carbasse, J., Meier-Kolthoff, J.P., Reimer, L.C. and Göker, M. | 10.1099/ijsem.0.004332 | List of Prokaryotic names with Standing in Nomenclature (LPSN) moves to the DSMZ | |
| 67771 | Curators of the KCTC | https://kctc.kribb.re.kr/En/Kctc | ||
| 69479 | João F Matias Rodrigues, Janko Tackmann,Gregor Rot, Thomas SB Schmidt, Lukas Malfertheiner, Mihai Danaila,Marija Dmitrijeva, Daniela Gaio, Nicolas Näpflin and Christian von Mering. University of Zurich. | https://microbeatlas.org/ | MicrobeAtlas 1.0 beta | |
| 82699 | Reimer, L.C., Lissin, A.,Schober, I., Witte,J.F., Podstawka, A., Lüken, H., Bunk, B.,Overmann, J. | 10.60712/SI-ID399084.1 | StrainInfo: A central database for resolving microbial strain identifiers |