Strain identifier

BacDive ID: 13506

Type strain: Yes

Species: Actinomycetospora succinea

Strain Designation: TT00-49

Strain history: KACC 14255 <-- NBRC 103691 <-- T. Tamura TT00-49.

NCBI tax ID(s): 663603 (species)

« back to strain detail view
For citation purpose refer to the digital object identifier (doi) of the current version.
Archive
version 8.1 (current version):
version 8:
version 7.1:
version 7:
version 6:
version 5:
version 4.1:
version 4:
version 3:
version 2.1:
version 2:
version 1:
version 8.1 (current version)

General

@ref: 18189

BacDive-ID: 13506

DSM-Number: 45775

keywords: genome sequence, 16S sequence, Bacteria, mesophilic

description: Actinomycetospora succinea TT00-49 is a mesophilic bacterium that builds an aerial mycelium and was isolated from vegetable field soil.

NCBI tax id

  • NCBI tax id: 663603
  • Matching level: species

strain history

@refhistory
18189<- S.-W. Kwon, KACC; KACC 14255 <- T. Tamura; TT00-49
67770KACC 14255 <-- NBRC 103691 <-- T. Tamura TT00-49.

doi: 10.13145/bacdive13506.20230509.8.1

Name and taxonomic classification

LPSN

  • @ref: 20215
  • description: domain/bacteria
  • keyword: phylum/actinomycetota
  • domain: Bacteria
  • phylum: Actinomycetota
  • class: Actinomycetes
  • order: Pseudonocardiales
  • family: Pseudonocardiaceae
  • genus: Actinomycetospora
  • species: Actinomycetospora succinea
  • full scientific name: Actinomycetospora succinea Tamura et al. 2011

@ref: 18189

domain: Bacteria

phylum: Actinobacteria

class: Actinobacteria

order: Actinomycetales

family: Pseudonocardiaceae

genus: Actinomycetospora

species: Actinomycetospora succinea

full scientific name: Actinomycetospora succinea Tamura et al. 2011

strain designation: TT00-49

type strain: yes

Morphology

colony morphology

@refcolony colormedium used
69434Golden yellow (1004)ISP 4
69434Ivory (1014), honey yellow (1005)suter without tyrosine
69434Sand yellow (1002)suter with tyrosine
69434Signal yellow (1003)ISP 2
69434Signal yellow (1003)ISP 3
69434Signal yellow (1003)ISP 5
69434Signal yellow (1003)ISP 6
69434Signal yellow (1003), maize yellow (1006)ISP 7

multicellular morphology

@refforms multicellular complexcomplex namemedium name
69434yesAerial myceliumISP 2
69434noAerial myceliumISP 3
69434noAerial myceliumISP 4
69434noAerial myceliumISP 5
69434noAerial myceliumISP 6
69434noAerial myceliumISP 7
69434noAerial myceliumsuter with tyrosine
69434noAerial myceliumsuter without tyrosine

pigmentation

@refproductionnamecolor
69434yesMelanin
69434yessoluble pigmentSand yellow (1002)

multimedia

@refmultimedia contentcaptionintellectual property rights
69434DSM_45775_image3.jpegPlates (65, ISP2, ISP3, ISP4, ISP5, ISP7)Helmholtz-Zentrum für Infektionsforschung GmbH
69434DSM_45775_image4.jpegPlates (65, ISP2, ISP3, ISP4, ISP5, ISP7)Helmholtz-Zentrum für Infektionsforschung GmbH

Culture and growth conditions

culture medium

  • @ref: 18189
  • name: GYM STREPTOMYCES MEDIUM (DSMZ Medium 65)
  • growth: yes
  • link: https://mediadive.dsmz.de/medium/65
  • composition: Name: GYM STREPTOMYCES MEDIUM (DSMZ Medium 65) Composition: Agar 18.0 g/l Malt extract 10.0 g/l Yeast extract 4.0 g/l Glucose 4.0 g/l CaCO3 2.0 g/l Distilled water

culture temp

@refgrowthtypetemperaturerange
18189positivegrowth28mesophilic
67770positivegrowth28mesophilic

Physiology and metabolism

halophily

  • @ref: 69434
  • salt: NaCl
  • growth: positive
  • tested relation: growth
  • concentration: 0-10 %

observation

  • @ref: 67770
  • observation: quinones: MK-8(H4)

metabolite utilization

@refChebi-IDmetaboliteutilization activitykind of utilization tested
6943422599arabinose+/-growth
6943462968cellulose-growth
6943428757fructose+growth
6943417234glucose+growth
6943417268inositol-growth
6943437684mannose+growth
6943416634raffinose+/-growth
6943426546rhamnose-growth
6943417992sucrose+growth
6943418222xylose+/-growth
6837917632nitrate-reduction
683794853esculin-hydrolysis
6837916199urea-hydrolysis
683795291gelatin-hydrolysis
6837917634D-glucose-fermentation
6837916988D-ribose-fermentation
6837965327D-xylose-fermentation
6837916899D-mannitol-fermentation
6837917306maltose-fermentation
6837917716lactose-fermentation
6837917992sucrose-fermentation
6837928087glycogen-fermentation

enzymes

@refvalueactivityec
68379gelatinase-
68379urease-3.5.1.5
68379beta-glucosidase-3.2.1.21
68379N-acetyl-beta-glucosaminidase-3.2.1.52
68379alpha-glucosidase-3.2.1.20
68379beta-galactosidase-3.2.1.23
68379beta-glucuronidase-3.2.1.31
68379alkaline phosphatase-3.1.3.1
68379pyrrolidonyl arylamidase-3.4.19.3
68379pyrazinamidase-3.5.1.B15
68382alkaline phosphatase-3.1.3.1
68382esterase (C 4)+
68382esterase lipase (C 8)+
68382lipase (C 14)-
68382leucine arylamidase+3.4.11.1
68382valine arylamidase+
68382cystine arylamidase-3.4.11.3
68382trypsin-3.4.21.4
68382alpha-chymotrypsin-3.4.21.1
68382acid phosphatase+3.1.3.2
68382alpha-galactosidase-3.2.1.22
68382beta-galactosidase-3.2.1.23
68382beta-glucuronidase-3.2.1.31
68382beta-glucosidase-3.2.1.21
68382N-acetyl-beta-glucosaminidase-3.2.1.52
68382alpha-mannosidase-3.2.1.24
68382alpha-fucosidase-3.2.1.51

API coryne

@refNITPYZPYRAPALbeta GURbeta GALalpha GLUbeta NAGESCUREGELGLURIBXYLMANMALLACSACGLYG
69434-------------------

API zym

@refAlkaline phosphataseEsteraseEsterase LipaseLipaseLeucine arylamidaseValine arylamidaseCystine arylamidaseTrypsinalpha- ChymotrypsinAcid phosphataseNaphthol-AS-BI-phosphohydrolasealpha- Galactosidasebeta- Galactosidasebeta- Glucuronidasealpha- Glucosidasebeta- GlucosidaseN-acetyl-beta- glucosaminidasealpha- Mannosidasealpha- Fucosidase
69434-++-++---++/----+/-----

Isolation, sampling and environmental information

isolation

@refsample typegeographic locationcountryorigin.countrycontinent
18189vegetable field soilAmami Isalnd, KagoshimaJapanJPNAsia
67770Vegetable field soilAmami Island, Kagoshima Pref.JapanJPNAsia

isolation source categories

Cat1Cat2Cat3
#Engineered#Agriculture#Field
#Environmental#Terrestrial#Soil
#Host#Plants
#Host Body-Site#Plant#Fruit (Seed)

Safety information

risk assessment

  • @ref: 18189
  • biosafety level: 1
  • biosafety level comment: Risk group (German classification)

Sequence information

16S sequences

  • @ref: 18189
  • description: Actinomycetospora succinea gene for 16S rRNA, partial sequence, strain: TT00-49
  • accession: AB514514
  • length: 1487
  • database: ena
  • NCBI tax ID: 663603

Genome sequences

@refdescriptionaccessionassembly leveldatabaseNCBI tax ID
66792Actinomycetospora succinea strain DSM 45775663603.3wgspatric663603
66792Actinomycetospora succinea DSM 457752795385474draftimg663603
67770Actinomycetospora succinea DSM 45775GCA_004363095scaffoldncbi663603

GC content

@refGC-contentmethod
1818973
6777073high performance liquid chromatography (HPLC)

Genome-based predictions

predictions

traitpredictionconfidencetraining_data
gram-positiveyes89.149no
anaerobicno98.865no
halophileno89.716no
spore-formingyes59.793no
glucose-utilyes85.097no
thermophileno98.448no
flagellatedno98.349no
motileno89.2no
aerobicyes95.191no
glucose-fermentno91.793yes

External links

@ref: 18189

culture collection no.: DSM 45775, KACC 14255, NBRC 103691, JCM 17984

straininfo link

  • @ref: 82698
  • straininfo: 396527

literature

  • topic: Phylogeny
  • Pubmed-ID: 20622052
  • title: Description of Actinomycetospora chibensis sp. nov., Actinomycetospora chlora sp. nov., Actinomycetospora cinnamomea sp. nov., Actinomycetospora corticicola sp. nov., Actinomycetospora lutea sp. nov., Actinomycetospora straminea sp. nov. and Actinomycetospora succinea sp. nov. and emended description of the genus Actinomycetospora.
  • authors: Tamura T, Ishida Y, Hamada M, Otoguro M, Yamamura H, Hayakawa M, Suzuki KI
  • journal: Int J Syst Evol Microbiol
  • DOI: 10.1099/ijs.0.024166-0
  • year: 2010
  • mesh: Actinomycetales/chemistry/*classification/genetics/*isolation & purification, Amino Acids/analysis, Base Composition, Carbohydrates/analysis, Cell Wall/chemistry, Cluster Analysis, DNA, Bacterial/chemistry/genetics, DNA, Ribosomal/chemistry/genetics, Fatty Acids/analysis, Japan, Molecular Sequence Data, Nucleic Acid Hybridization, Peptidoglycan/chemistry, Phospholipids/analysis, Phylogeny, Quinones/analysis, RNA, Ribosomal, 16S/genetics, Sequence Analysis, DNA
  • topic2: Genetics

Reference

@idauthorscataloguedoi/urltitle
18189Curators of the DSMZLeibniz Institut DSMZ-Deutsche Sammlung von Mikroorganismen und Zellkulturen GmbH (DSM 45775)https://www.dsmz.de/collection/catalogue/details/culture/DSM-45775
20215Parte, A.C., Sardà Carbasse, J., Meier-Kolthoff, J.P., Reimer, L.C. and Göker, M.10.1099/ijsem.0.004332List of Prokaryotic names with Standing in Nomenclature (LPSN) moves to the DSMZ
66792Julia Koblitz, Joaquim Sardà, Lorenz Christian Reimer, Boyke Bunk, Jörg Overmannhttps://diaspora-project.de/progress.html#genomesAutomatically annotated for the DiASPora project (Digital Approaches for the Synthesis of Poorly Accessible Biodiversity Information)
67770Curators of the JCMhttps://jcm.brc.riken.jp/en/
68379Automatically annotated from API Coryne
68382Automatically annotated from API zym
69434Wink, J.https://cdn.dsmz.de/wink/DSM%2045775.pdfCompendium of Actinobacteria. HZI-Helmholtz-Centre for Infection Research, Braunschweig
82698Reimer, L.C., Lissin, A.,Schober, I., Witte,J.F., Podstawka, A., Lüken, H., Bunk, B.,Overmann, J.10.60712/SI-ID396527.1StrainInfo: A central database for resolving microbial strain identifiers