Strain identifier
BacDive ID: 13504
Type strain:
Species: Actinomycetospora lutea
Strain Designation: TT00-04
Strain history: KACC 14254 <-- NBRC 103690 <-- T. Tamura TT00-04.
NCBI tax ID(s): 663604 (species)
General
@ref: 18187
BacDive-ID: 13504
DSM-Number: 45773
keywords: genome sequence, 16S sequence, Bacteria, mesophilic
description: Actinomycetospora lutea TT00-04 is a mesophilic bacterium that builds an aerial mycelium and was isolated from vegetable field soil.
NCBI tax id
- NCBI tax id: 663604
- Matching level: species
strain history
@ref | history |
---|---|
18187 | <- S.-W. Kwon, KACC; KACC 14254 <- T. Tamura; TT00-04 |
67770 | KACC 14254 <-- NBRC 103690 <-- T. Tamura TT00-04. |
doi: 10.13145/bacdive13504.20230509.8.1
Name and taxonomic classification
LPSN
- @ref: 20215
- description: domain/bacteria
- keyword: phylum/actinomycetota
- domain: Bacteria
- phylum: Actinomycetota
- class: Actinomycetes
- order: Pseudonocardiales
- family: Pseudonocardiaceae
- genus: Actinomycetospora
- species: Actinomycetospora lutea
- full scientific name: Actinomycetospora lutea Tamura et al. 2011
@ref: 18187
domain: Bacteria
phylum: Actinobacteria
class: Actinobacteria
order: Actinomycetales
family: Pseudonocardiaceae
genus: Actinomycetospora
species: Actinomycetospora lutea
full scientific name: Actinomycetospora lutea Tamura et al. 2011
strain designation: TT00-04
type strain: yes
Morphology
colony morphology
@ref | colony color | medium used |
---|---|---|
69432 | Golden yellow (1004) | ISP 2 |
69432 | Golden yellow (1004) | ISP 6 |
69432 | Dahlia yellow (1033) | ISP 4 |
69432 | Signal yellow (1003) | ISP 3 |
69432 | Signal yellow (1003) | ISP 5 |
69432 | Signal yellow (1003) | ISP 7 |
69432 | Signal yellow (1003) | suter with tyrosine |
69432 | Signal yellow (1003) | suter without tyrosine |
multicellular morphology
@ref | forms multicellular complex | complex name | medium name |
---|---|---|---|
69432 | no | Aerial mycelium | ISP 2 |
69432 | no | Aerial mycelium | ISP 3 |
69432 | yes | Aerial mycelium | ISP 4 |
69432 | no | Aerial mycelium | ISP 5 |
69432 | no | Aerial mycelium | ISP 6 |
69432 | no | Aerial mycelium | ISP 7 |
69432 | no | Aerial mycelium | suter with tyrosine |
69432 | no | Aerial mycelium | suter without tyrosine |
pigmentation
@ref | production | name |
---|---|---|
69432 | no | Melanin |
69432 | no | soluble pigment |
Culture and growth conditions
culture medium
- @ref: 18187
- name: GYM STREPTOMYCES MEDIUM (DSMZ Medium 65)
- growth: yes
- link: https://mediadive.dsmz.de/medium/65
- composition: Name: GYM STREPTOMYCES MEDIUM (DSMZ Medium 65) Composition: Agar 18.0 g/l Malt extract 10.0 g/l Yeast extract 4.0 g/l Glucose 4.0 g/l CaCO3 2.0 g/l Distilled water
culture temp
@ref | growth | type | temperature | range |
---|---|---|---|---|
18187 | positive | growth | 28 | mesophilic |
67770 | positive | growth | 28 | mesophilic |
Physiology and metabolism
halophily
- @ref: 69432
- salt: NaCl
- growth: positive
- tested relation: growth
- concentration: 0-7.5 %
observation
- @ref: 67770
- observation: quinones: MK-8(H4)
metabolite utilization
@ref | Chebi-ID | metabolite | utilization activity | kind of utilization tested |
---|---|---|---|---|
69432 | 22599 | arabinose | +/- | growth |
69432 | 62968 | cellulose | +/- | growth |
69432 | 28757 | fructose | + | growth |
69432 | 17234 | glucose | + | growth |
69432 | 17268 | inositol | +/- | growth |
69432 | 37684 | mannose | + | growth |
69432 | 16634 | raffinose | +/- | growth |
69432 | 26546 | rhamnose | + | growth |
69432 | 17992 | sucrose | + | growth |
69432 | 18222 | xylose | +/- | growth |
68379 | 17632 | nitrate | - | reduction |
68379 | 4853 | esculin | - | hydrolysis |
68379 | 16199 | urea | - | hydrolysis |
68379 | 5291 | gelatin | - | hydrolysis |
68379 | 17634 | D-glucose | - | fermentation |
68379 | 16988 | D-ribose | - | fermentation |
68379 | 65327 | D-xylose | - | fermentation |
68379 | 16899 | D-mannitol | - | fermentation |
68379 | 17306 | maltose | - | fermentation |
68379 | 17716 | lactose | - | fermentation |
68379 | 17992 | sucrose | - | fermentation |
68379 | 28087 | glycogen | - | fermentation |
enzymes
@ref | value | activity | ec |
---|---|---|---|
68379 | gelatinase | - | |
68379 | urease | - | 3.5.1.5 |
68379 | beta-glucosidase | - | 3.2.1.21 |
68379 | N-acetyl-beta-glucosaminidase | - | 3.2.1.52 |
68379 | alpha-glucosidase | + | 3.2.1.20 |
68379 | beta-galactosidase | - | 3.2.1.23 |
68379 | beta-glucuronidase | - | 3.2.1.31 |
68379 | alkaline phosphatase | - | 3.1.3.1 |
68379 | pyrrolidonyl arylamidase | - | 3.4.19.3 |
68379 | pyrazinamidase | - | 3.5.1.B15 |
68382 | alkaline phosphatase | - | 3.1.3.1 |
68382 | esterase (C 4) | + | |
68382 | esterase lipase (C 8) | + | |
68382 | lipase (C 14) | - | |
68382 | leucine arylamidase | + | 3.4.11.1 |
68382 | cystine arylamidase | - | 3.4.11.3 |
68382 | trypsin | - | 3.4.21.4 |
68382 | alpha-chymotrypsin | - | 3.4.21.1 |
68382 | alpha-galactosidase | - | 3.2.1.22 |
68382 | beta-galactosidase | - | 3.2.1.23 |
68382 | beta-glucuronidase | - | 3.2.1.31 |
68382 | beta-glucosidase | - | 3.2.1.21 |
68382 | N-acetyl-beta-glucosaminidase | - | 3.2.1.52 |
68382 | alpha-mannosidase | - | 3.2.1.24 |
68382 | alpha-fucosidase | - | 3.2.1.51 |
API coryne
@ref | NIT | PYZ | PYRA | PAL | beta GUR | beta GAL | alpha GLU | beta NAG | ESC | URE | GEL | GLU | RIB | XYL | MAN | MAL | LAC | SAC | GLYG |
---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
69432 | - | - | - | - | - | - | + | - | - | - | - | - | - | - | - | - | - | - | - |
API zym
@ref | Alkaline phosphatase | Esterase | Esterase Lipase | Lipase | Leucine arylamidase | Valine arylamidase | Cystine arylamidase | Trypsin | alpha- Chymotrypsin | Acid phosphatase | Naphthol-AS-BI-phosphohydrolase | alpha- Galactosidase | beta- Galactosidase | beta- Glucuronidase | alpha- Glucosidase | beta- Glucosidase | N-acetyl-beta- glucosaminidase | alpha- Mannosidase | alpha- Fucosidase |
---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
69432 | - | + | + | - | + | +/- | - | - | - | +/- | +/- | - | - | - | +/- | - | - | - | - |
Isolation, sampling and environmental information
isolation
@ref | sample type | geographic location | country | origin.country | continent |
---|---|---|---|---|---|
18187 | vegetable field soil | Amami Island, Kagoshima | Japan | JPN | Asia |
67770 | Vegetable field soil | Amami Island, Kagoshima Pref. | Japan | JPN | Asia |
isolation source categories
Cat1 | Cat2 | Cat3 |
---|---|---|
#Engineered | #Agriculture | #Field |
#Environmental | #Terrestrial | #Soil |
#Host | #Plants | |
#Host Body-Site | #Plant | #Fruit (Seed) |
Safety information
risk assessment
- @ref: 18187
- biosafety level: 1
- biosafety level comment: Risk group (German classification)
Sequence information
16S sequences
- @ref: 18187
- description: Actinomycetospora lutea gene for 16S rRNA, partial sequence, strain: TT00-04
- accession: AB514515
- length: 1486
- database: ena
- NCBI tax ID: 663604
Genome sequences
- @ref: 66792
- description: Actinomycetospora lutea TBRC 2215
- accession: GCA_028737205
- assembly level: contig
- database: ncbi
- NCBI tax ID: 663604
GC content
@ref | GC-content | method |
---|---|---|
18187 | 73 | |
67770 | 73 | high performance liquid chromatography (HPLC) |
Genome-based predictions
predictions
trait | prediction | confidence | training_data |
---|---|---|---|
motile | no | 85.033 | no |
flagellated | no | 97.806 | no |
gram-positive | yes | 65.869 | no |
anaerobic | no | 92.07 | no |
aerobic | yes | 90.494 | no |
halophile | no | 81.015 | no |
spore-forming | no | 71.702 | no |
glucose-ferment | no | 87.724 | no |
thermophile | no | 97.432 | yes |
glucose-util | yes | 84.858 | yes |
External links
@ref: 18187
culture collection no.: DSM 45773, KACC 14254, NBRC 103690, JCM 17982, BCC 49506, TBRC 2215
straininfo link
- @ref: 82696
- straininfo: 405548
literature
topic | Pubmed-ID | title | authors | journal | DOI | year | mesh | topic2 |
---|---|---|---|---|---|---|---|---|
Phylogeny | 20622052 | Description of Actinomycetospora chibensis sp. nov., Actinomycetospora chlora sp. nov., Actinomycetospora cinnamomea sp. nov., Actinomycetospora corticicola sp. nov., Actinomycetospora lutea sp. nov., Actinomycetospora straminea sp. nov. and Actinomycetospora succinea sp. nov. and emended description of the genus Actinomycetospora. | Tamura T, Ishida Y, Hamada M, Otoguro M, Yamamura H, Hayakawa M, Suzuki KI | Int J Syst Evol Microbiol | 10.1099/ijs.0.024166-0 | 2010 | Actinomycetales/chemistry/*classification/genetics/*isolation & purification, Amino Acids/analysis, Base Composition, Carbohydrates/analysis, Cell Wall/chemistry, Cluster Analysis, DNA, Bacterial/chemistry/genetics, DNA, Ribosomal/chemistry/genetics, Fatty Acids/analysis, Japan, Molecular Sequence Data, Nucleic Acid Hybridization, Peptidoglycan/chemistry, Phospholipids/analysis, Phylogeny, Quinones/analysis, RNA, Ribosomal, 16S/genetics, Sequence Analysis, DNA | Genetics |
Phylogeny | 25701847 | Actinomycetospora rhizophila sp. nov., an actinomycete isolated from rhizosphere soil of a peace lily (Spathi phyllum Kochii). | He H, Zhang Y, Ma Z, Li C, Liu C, Zhou Y, Li L, Wang X, Xiang W | Int J Syst Evol Microbiol | 10.1099/ijs.0.000131 | 2015 | Actinomycetales/*classification/genetics/isolation & purification, Bacterial Typing Techniques, Base Composition, China, DNA, Bacterial/genetics, Diaminopimelic Acid/chemistry, Fatty Acids/chemistry, Lilium/*microbiology, Molecular Sequence Data, Nucleic Acid Hybridization, Phospholipids/chemistry, *Phylogeny, RNA, Ribosomal, 16S/genetics, *Rhizosphere, Sequence Analysis, DNA, *Soil Microbiology, Vitamin K 2/analogs & derivatives/chemistry | Genetics |
Reference
@id | authors | catalogue | doi/url | title |
---|---|---|---|---|
18187 | Curators of the DSMZ | Leibniz Institut DSMZ-Deutsche Sammlung von Mikroorganismen und Zellkulturen GmbH (DSM 45773) | https://www.dsmz.de/collection/catalogue/details/culture/DSM-45773 | |
20215 | Parte, A.C., Sardà Carbasse, J., Meier-Kolthoff, J.P., Reimer, L.C. and Göker, M. | 10.1099/ijsem.0.004332 | List of Prokaryotic names with Standing in Nomenclature (LPSN) moves to the DSMZ | |
66792 | Julia Koblitz, Joaquim Sardà, Lorenz Christian Reimer, Boyke Bunk, Jörg Overmann | https://diaspora-project.de/progress.html#genomes | Automatically annotated for the DiASPora project (Digital Approaches for the Synthesis of Poorly Accessible Biodiversity Information) | |
67770 | Curators of the JCM | https://jcm.brc.riken.jp/en/ | ||
68379 | Automatically annotated from API Coryne | |||
68382 | Automatically annotated from API zym | |||
69432 | Wink, J. | https://cdn.dsmz.de/wink/DSM%2045773.pdf | Compendium of Actinobacteria. HZI-Helmholtz-Centre for Infection Research, Braunschweig | |
82696 | Reimer, L.C., Lissin, A.,Schober, I., Witte,J.F., Podstawka, A., Lüken, H., Bunk, B.,Overmann, J. | 10.60712/SI-ID405548.1 | StrainInfo: A central database for resolving microbial strain identifiers |