Strain identifier

BacDive ID: 13501

Type strain: Yes

Species: Actinomycetospora chlora

Strain Designation: TT07I-57

Strain history: KACC 14252 <-- NBRC 105900 <-- T. Tamura TT071-57.

NCBI tax ID(s): 663608 (species)

For citation purpose refer to the digital object identifier (doi) of the current version.
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General

@ref: 18184

BacDive-ID: 13501

DSM-Number: 45770

keywords: 16S sequence, Bacteria

description: Actinomycetospora chlora TT07I-57 is a bacterium that was isolated from rice field soil.

NCBI tax id

  • NCBI tax id: 663608
  • Matching level: species

strain history

@refhistory
18184<- S.-W. Kwon, KACC; KACC 14252 <- T. Tamura; TT07I-57
67770KACC 14252 <-- NBRC 105900 <-- T. Tamura TT071-57.

doi: 10.13145/bacdive13501.20240510.9

Name and taxonomic classification

LPSN

  • @ref: 20215
  • description: domain/bacteria
  • keyword: phylum/actinomycetota
  • domain: Bacteria
  • phylum: Actinomycetota
  • class: Actinomycetes
  • order: Pseudonocardiales
  • family: Pseudonocardiaceae
  • genus: Actinomycetospora
  • species: Actinomycetospora chlora
  • full scientific name: Actinomycetospora chlora Tamura et al. 2011

@ref: 18184

domain: Bacteria

phylum: Actinobacteria

class: Actinobacteria

order: Actinomycetales

family: Pseudonocardiaceae

genus: Actinomycetospora

species: Actinomycetospora chlora

full scientific name: Actinomycetospora chlora Tamura et al. 2011

strain designation: TT07I-57

type strain: yes

Culture and growth conditions

culture medium

@refnamegrowthlinkcomposition
18184ISP2 MEDIUM (DSMZ Medium 987)yeshttps://mediadive.dsmz.de/medium/987Name: ISP 2 MEDIUM (DSMZ Medium 987) Composition: Agar 20.0 g/l Malt extract 10.0 g/l Dextrose 4.0 g/l Yeast extract 4.0 g/l Distilled water
18184GYM STREPTOMYCES MEDIUM (DSMZ Medium 65)yeshttps://mediadive.dsmz.de/medium/65Name: GYM STREPTOMYCES MEDIUM (DSMZ Medium 65) Composition: Agar 18.0 g/l Malt extract 10.0 g/l Yeast extract 4.0 g/l Glucose 4.0 g/l CaCO3 2.0 g/l Distilled water

culture temp

@refgrowthtypetemperature
18184positivegrowth28
67770positivegrowth28

Physiology and metabolism

observation

  • @ref: 67770
  • observation: quinones: MK-8(H4)

Isolation, sampling and environmental information

isolation

@refsample typegeographic locationcountryorigin.countrycontinent
18184rice field soilIriomote Island, OkinawaJapanJPNAsia
67770Paddy soilIriomote Island, Okinawa Pref.JapanJPNAsia

isolation source categories

Cat1Cat2Cat3
#Engineered#Agriculture#Field
#Environmental#Terrestrial#Soil
#Host#Plants#Herbaceous plants (Grass,Crops)

taxonmaps

  • @ref: 69479
  • File name: preview.99_108856.png
  • url: https://microbeatlas.org/index.html?action=taxon&taxon_id=90_10;96_289;97_8757;98_10735;99_108856&stattab=map
  • Last taxonomy: Actinomycetospora chlora
  • 16S sequence: AB514519
  • Sequence Identity:
  • Total samples: 820
  • soil counts: 545
  • aquatic counts: 77
  • animal counts: 110
  • plant counts: 88

Safety information

risk assessment

  • @ref: 18184
  • biosafety level: 1
  • biosafety level comment: Risk group (German classification)

Sequence information

16S sequences

  • @ref: 18184
  • description: Actinomycetospora chlora gene for 16S rRNA, partial sequence, strain: TT07I-57
  • accession: AB514519
  • length: 1487
  • database: nuccore
  • NCBI tax ID: 663608

GC content

@refGC-contentmethod
1818473
6777073high performance liquid chromatography (HPLC)

External links

@ref: 18184

culture collection no.: DSM 45770, KACC 14252, NBRC 105900, JCM 17979

straininfo link

  • @ref: 82693
  • straininfo: 407688

literature

topicPubmed-IDtitleauthorsjournalDOIyearmeshtopic2
Phylogeny20622052Description of Actinomycetospora chibensis sp. nov., Actinomycetospora chlora sp. nov., Actinomycetospora cinnamomea sp. nov., Actinomycetospora corticicola sp. nov., Actinomycetospora lutea sp. nov., Actinomycetospora straminea sp. nov. and Actinomycetospora succinea sp. nov. and emended description of the genus Actinomycetospora.Tamura T, Ishida Y, Hamada M, Otoguro M, Yamamura H, Hayakawa M, Suzuki KIInt J Syst Evol Microbiol10.1099/ijs.0.024166-02010Actinomycetales/chemistry/*classification/genetics/*isolation & purification, Amino Acids/analysis, Base Composition, Carbohydrates/analysis, Cell Wall/chemistry, Cluster Analysis, DNA, Bacterial/chemistry/genetics, DNA, Ribosomal/chemistry/genetics, Fatty Acids/analysis, Japan, Molecular Sequence Data, Nucleic Acid Hybridization, Peptidoglycan/chemistry, Phospholipids/analysis, Phylogeny, Quinones/analysis, RNA, Ribosomal, 16S/genetics, Sequence Analysis, DNAGenetics
Phylogeny25701847Actinomycetospora rhizophila sp. nov., an actinomycete isolated from rhizosphere soil of a peace lily (Spathi phyllum Kochii).He H, Zhang Y, Ma Z, Li C, Liu C, Zhou Y, Li L, Wang X, Xiang WInt J Syst Evol Microbiol10.1099/ijs.0.0001312015Actinomycetales/*classification/genetics/isolation & purification, Bacterial Typing Techniques, Base Composition, China, DNA, Bacterial/genetics, Diaminopimelic Acid/chemistry, Fatty Acids/chemistry, Lilium/*microbiology, Molecular Sequence Data, Nucleic Acid Hybridization, Phospholipids/chemistry, *Phylogeny, RNA, Ribosomal, 16S/genetics, *Rhizosphere, Sequence Analysis, DNA, *Soil Microbiology, Vitamin K 2/analogs & derivatives/chemistryGenetics

Reference

@idauthorscataloguedoi/urltitle
18184Curators of the DSMZLeibniz Institut DSMZ-Deutsche Sammlung von Mikroorganismen und Zellkulturen GmbH (DSM 45770)https://www.dsmz.de/collection/catalogue/details/culture/DSM-45770
20215Parte, A.C., Sardà Carbasse, J., Meier-Kolthoff, J.P., Reimer, L.C. and Göker, M.10.1099/ijsem.0.004332List of Prokaryotic names with Standing in Nomenclature (LPSN) moves to the DSMZ
67770Curators of the JCMhttps://jcm.brc.riken.jp/en/
69479João F Matias Rodrigues, Janko Tackmann,Gregor Rot, Thomas SB Schmidt, Lukas Malfertheiner, Mihai Danaila,Marija Dmitrijeva, Daniela Gaio, Nicolas Näpflin and Christian von Mering. University of Zurich.https://microbeatlas.org/MicrobeAtlas 1.0 beta
82693Reimer, L.C., Lissin, A.,Schober, I., Witte,J.F., Podstawka, A., Lüken, H., Bunk, B.,Overmann, J.10.60712/SI-ID407688.1StrainInfo: A central database for resolving microbial strain identifiers