Strain identifier

BacDive ID: 134996

Type strain: Yes

Species: Amaricoccus tamworthensis

Strain Designation: Ben-103

Strain history: CIP <- 2001, M. Dougall, Victoria, Australia: strain Ben-103

NCBI tax ID(s): 57002 (species)

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General

@ref: 33710

BacDive-ID: 134996

DSM-Number: 101596

keywords: Bacteria, mesophilic, Gram-negative, coccus-shaped

description: Amaricoccus tamworthensis Ben-103 is a mesophilic, Gram-negative, coccus-shaped bacterium of the family Paracoccaceae.

NCBI tax id

  • NCBI tax id: 57002
  • Matching level: species

strain history

  • @ref: 33710
  • history: CIP <- 2001, M. Dougall, Victoria, Australia: strain Ben-103

doi: 10.13145/bacdive134996.20230509.8.1

Name and taxonomic classification

LPSN

  • @ref: 20215
  • description: domain/bacteria
  • keyword: phylum/pseudomonadota
  • domain: Bacteria
  • phylum: Pseudomonadota
  • class: Alphaproteobacteria
  • order: Rhodobacterales
  • family: Paracoccaceae
  • genus: Amaricoccus
  • species: Amaricoccus tamworthensis
  • full scientific name: Amaricoccus tamworthensis Maszenan et al. 1997

@ref: 33710

domain: Bacteria

phylum: Proteobacteria

class: Alphaproteobacteria

order: Rhodobacterales

family: Rhodobacteraceae

genus: Amaricoccus

species: Amaricoccus tamworthensis

full scientific name: Amaricoccus tamworthensis Maszenan et al. 1997

strain designation: Ben-103

type strain: yes

Morphology

cell morphology

  • @ref: 33710
  • gram stain: negative
  • cell shape: coccus-shaped
  • motility: no

Culture and growth conditions

culture medium

@refnamegrowthlinkcomposition
68862ISP2 MEDIUM (DSMZ Medium 987)yeshttps://www.dsmz.de/microorganisms/medium/pdf/DSMZ_Medium987.pdf
68862GYM STREPTOMYCES MEDIUM (DSMZ Medium 65)yeshttps://www.dsmz.de/microorganisms/medium/pdf/DSMZ_Medium65.pdf
33710MEDIUM 57 - for Streptomyces, Nocardioides, Lentzea albidocapillata and Streptoverticillium reticulumyesDistilled water make up to (1000.000 ml);Agar (15.000 g);Glucose (4.000g);Yeast extract (4.000 g);Malt extract (10.000 g);Calcium carbonate (2.000 g)
33710CIP Medium 57yeshttps://catalogue-crbip.pasteur.fr/fiche_milieu.xhtml?crbip=57

culture temp

@refgrowthtypetemperaturerange
33710positivegrowth25mesophilic
68862positivegrowth25mesophilic
33710positivegrowth5-30
33710nogrowth37mesophilic
33710nogrowth41thermophilic

Physiology and metabolism

halophily

@refsaltgrowthtested relationconcentration
33710NaClnogrowth0 %
33710NaClnogrowth2 %
33710NaClnogrowth4 %
33710NaClnogrowth6 %
33710NaClnogrowth8 %
33710NaClnogrowth10 %

metabolite utilization

@refChebi-IDmetaboliteutilization activitykind of utilization tested
337104853esculin-hydrolysis
3371017632nitrate-reduction
3371016301nitrite-reduction
3371017632nitrate-respiration

metabolite production

  • @ref: 33710
  • Chebi-ID: 35581
  • metabolite: indole
  • production: no

metabolite tests

  • @ref: 33710
  • Chebi-ID: 15688
  • metabolite: acetoin
  • voges-proskauer-test: -

enzymes

@refvalueactivityec
33710oxidase+
33710beta-galactosidase-3.2.1.23
33710alcohol dehydrogenase-1.1.1.1
33710gelatinase-
33710amylase-
33710DNase-
33710caseinase-3.4.21.50
33710catalase+1.11.1.6
33710tween esterase-
33710lecithinase-
33710lipase-
33710lysine decarboxylase-4.1.1.18
33710ornithine decarboxylase-4.1.1.17
33710protease-
33710tryptophan deaminase-
33710urease+3.5.1.5
68382alkaline phosphatase+3.1.3.1
68382esterase (C 4)+
68382esterase lipase (C 8)+
68382lipase (C 14)-
68382leucine arylamidase+3.4.11.1
68382valine arylamidase-
68382cystine arylamidase-3.4.11.3
68382trypsin-3.4.21.4
68382alpha-chymotrypsin-3.4.21.1
68382acid phosphatase+3.1.3.2
68382naphthol-AS-BI-phosphohydrolase-
68382alpha-galactosidase-3.2.1.22
68382beta-galactosidase-3.2.1.23
68382beta-glucuronidase-3.2.1.31
68382alpha-glucosidase+3.2.1.20
68382beta-glucosidase-3.2.1.21
68382N-acetyl-beta-glucosaminidase-3.2.1.52
68382alpha-mannosidase-3.2.1.24
68382alpha-fucosidase-3.2.1.51

API zym

@refControlAlkaline phosphataseEsteraseEsterase LipaseLipaseLeucine arylamidaseValine arylamidaseCystine arylamidaseTrypsinalpha- ChymotrypsinAcid phosphataseNaphthol-AS-BI-phosphohydrolasealpha- Galactosidasebeta- Galactosidasebeta- Glucuronidasealpha- Glucosidasebeta- GlucosidaseN-acetyl-beta- glucosaminidasealpha- Mannosidasealpha- Fucosidase
33710-+++-+----+----+----

API biotype100

@refGLUFRUGALTREMNESBEMELSACRAFMTEMALLACLTEMbGaMaGaCELGENMbGuESCRIBARAXYLPLERHAFUCMLZDARLLARLXLTDULTAGGLYINOMANMTLTURSORADOHBGLYXERYMDG3MDGSATMUCLTATDTATMTATDMLTLMLTCATETATETTECITGRTGAT2KG5KGTRYNAGGNTPACPATpOBEQATGTEmOBEBATPPATCMTTGEBETPCEABTHINLATCAPCYTHISSUCFUMGREGYTAVTETNTTNGLNITA3OBUAPTGTTPRODALALALASERMNTPROPTYR2KT
33710+++-++-+-++----++-+++++++++++++-++-+++-----+-----++-----++-++---------++-------++-+-----++++++-+--+

Isolation, sampling and environmental information

isolation

@refcountryorigin.countrycontinentsample typegeographic locationisolation date
33710AustraliaAUSAustralia and Oceania
68862AustraliaAUSAustralia and Oceaniaactivated sludgeTamworth
33710AustraliaAUSAustralia and OceaniaEnvironment, Activated sludge1996

Safety information

risk assessment

@refbiosafety levelbiosafety level comment
688621Risk group (German classification)
337101Risk group (French classification)

External links

@ref: 33710

culture collection no.: CIP 107261, ACM 5097, DSM 101596, Ben 103

straininfo link

  • @ref: 92427
  • straininfo: 100497

literature

  • topic: Phylogeny
  • Pubmed-ID: 9226904
  • title: Amaricoccus gen. nov., a gram-negative coccus occurring in regular packages or tetrads, isolated from activated sludge biomass, and descriptions of Amaricoccus veronensis sp. nov., Amaricoccus tamworthensis sp. nov., Amaricoccus macauensis sp. nov., and Amaricoccus kaplicensis sp. nov.
  • authors: Maszenan AM, Seviour RJ, Patel BK, Rees GN, McDougall BM
  • journal: Int J Syst Bacteriol
  • DOI: 10.1099/00207713-47-3-727
  • year: 1997
  • mesh: Carbohydrate Metabolism, Carbon/metabolism, DNA, Bacterial/analysis, Gram-Negative Bacteria/*classification/genetics/*isolation & purification, Molecular Sequence Data, Phylogeny, Sewage/*microbiology
  • topic2: Metabolism

Reference

@idauthorstitledoi/urlcatalogue
20215Parte, A.C., Sardà Carbasse, J., Meier-Kolthoff, J.P., Reimer, L.C. and Göker, M.List of Prokaryotic names with Standing in Nomenclature (LPSN) moves to the DSMZ10.1099/ijsem.0.004332
33710Curators of the CIPhttps://catalogue-crbip.pasteur.fr/fiche_catalogue.xhtml?crbip=CIP%20107261Collection of Institut Pasteur (CIP 107261)
68382Automatically annotated from API zym
68862Curators of the DSMZhttps://www.dsmz.de/collection/catalogue/details/culture/DSM-101596Leibniz Institut DSMZ-Deutsche Sammlung von Mikroorganismen und Zellkulturen GmbH (DSM 101596)
92427Reimer, L.C., Lissin, A.,Schober, I., Witte,J.F., Podstawka, A., Lüken, H., Bunk, B.,Overmann, J.StrainInfo: A central database for resolving microbial strain identifiers10.60712/SI-ID100497.1