Strain identifier

BacDive ID: 134939

Type strain: No

Species: Gardnerella vaginalis

Strain history: CIP <- 1987, Lab. Ident. Inst. Pasteur, Paris, France <- Mantes la Jolie Hosp., Mantes la Jolie, France

NCBI tax ID(s): 2702 (species)

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General

@ref: 33616

BacDive-ID: 134939

keywords: Bacteria, mesophilic, Gram-negative, rod-shaped

description: Gardnerella vaginalis CIP 102763 is a mesophilic, Gram-negative, rod-shaped bacterium of the family Bifidobacteriaceae.

NCBI tax id

  • NCBI tax id: 2702
  • Matching level: species

strain history

  • @ref: 33616
  • history: CIP <- 1987, Lab. Ident. Inst. Pasteur, Paris, France <- Mantes la Jolie Hosp., Mantes la Jolie, France

doi: 10.13145/bacdive134939.20230509.8.1

Name and taxonomic classification

LPSN

  • @ref: 20215
  • description: domain/bacteria
  • keyword: phylum/actinomycetota
  • domain: Bacteria
  • phylum: Actinomycetota
  • class: Actinomycetes
  • order: Bifidobacteriales
  • family: Bifidobacteriaceae
  • genus: Gardnerella
  • species: Gardnerella vaginalis
  • full scientific name: Gardnerella vaginalis (Gardner and Dukes 1955) Greenwood and Pickett 1980

  • synonyms

    @refsynonym
    20215Corynebacterium vaginale
    20215Haemophilus vaginalis

@ref: 33616

domain: Bacteria

phylum: Actinobacteria

class: Actinobacteria

order: Bifidobacteriales

family: Bifidobacteriaceae

genus: Gardnerella

species: Gardnerella vaginalis

type strain: no

Morphology

cell morphology

  • @ref: 33616
  • gram stain: negative
  • cell shape: rod-shaped
  • motility: no

colony morphology

  • @ref: 33616

Culture and growth conditions

culture medium

@refnamegrowthcompositionlink
33616MEDIUM 26 - for Gardnerella and Propionibacterium lymphophilumyesDistilled water make up to (1000.000 ml);Horse serum (200.000 ml);Brainheart infusion (37.000 g);Maltose 10 % solution - M0173 (200.000 ml)
33616CIP Medium 26yeshttps://catalogue-crbip.pasteur.fr/fiche_milieu.xhtml?crbip=26
33616CIP Medium 252yeshttps://catalogue-crbip.pasteur.fr/fiche_milieu.xhtml?crbip=252

culture temp

@refgrowthtypetemperaturerange
33616positivegrowth37mesophilic
33616positivegrowth30-41
33616nogrowth10psychrophilic
33616nogrowth15psychrophilic
33616nogrowth25mesophilic
33616nogrowth45thermophilic

Physiology and metabolism

halophily

@refsaltgrowthtested relationconcentration
33616NaClpositivegrowth2 %
33616NaClnogrowth0 %
33616NaClnogrowth4 %
33616NaClnogrowth6 %
33616NaClnogrowth8 %
33616NaClnogrowth10 %

metabolite utilization

@refmetaboliteutilization activitykind of utilization testedChebi-ID
68371Potassium 5-ketogluconate+builds acid from
68371Potassium 2-ketogluconate-builds acid from
68371gluconate-builds acid from24265
68371L-arabitol-builds acid from18403
68371D-arabitol-builds acid from18333
68371L-fucose-builds acid from18287
68371D-fucose-builds acid from28847
68371D-tagatose-builds acid from16443
68371D-lyxose-builds acid from62318
68371turanose-builds acid from32528
68371gentiobiose-builds acid from28066
68371xylitol-builds acid from17151
68371glycogen-builds acid from28087
68371starch-builds acid from28017
68371raffinose-builds acid from16634
68371melezitose-builds acid from6731
68371inulin-builds acid from15443
68371trehalose-builds acid from27082
68371sucrose-builds acid from17992
68371melibiose-builds acid from28053
68371lactose-builds acid from17716
68371maltose-builds acid from17306
68371cellobiose-builds acid from17057
68371salicin-builds acid from17814
68371esculin-builds acid from4853
68371arbutin-builds acid from18305
68371amygdalin-builds acid from27613
68371N-acetylglucosamine-builds acid from59640
68371methyl alpha-D-glucopyranoside-builds acid from320061
68371methyl alpha-D-mannoside-builds acid from43943
68371D-sorbitol-builds acid from17924
68371D-mannitol-builds acid from16899
68371myo-inositol-builds acid from17268
68371galactitol-builds acid from16813
68371L-rhamnose-builds acid from62345
68371L-sorbose-builds acid from17266
68371D-mannose-builds acid from16024
68371D-fructose-builds acid from15824
68371D-glucose-builds acid from17634
68371D-galactose-builds acid from12936
68371methyl beta-D-xylopyranoside-builds acid from74863
68371ribitol-builds acid from15963
68371L-xylose-builds acid from65328
68371D-xylose-builds acid from65327
68371D-ribose-builds acid from16988
68371L-arabinose-builds acid from30849
68371D-arabinose-builds acid from17108
68371erythritol-builds acid from17113
68371glycerol-builds acid from17754
33616citrate-carbon source16947
33616esculin-hydrolysis4853
33616hippurate+hydrolysis606565
33616nitrate-reduction17632
33616nitrite-reduction16301

antibiotic resistance

  • @ref: 33616
  • metabolite: 0129 (2,4-Diamino-6,7-di-iso-propylpteridine phosphate)
  • is antibiotic: yes
  • is sensitive: yes
  • is resistant: no

metabolite production

  • @ref: 33616
  • Chebi-ID: 35581
  • metabolite: indole
  • production: no

metabolite tests

@refChebi-IDmetabolitevoges-proskauer-testmethylred-test
3361615688acetoin-
3361617234glucose-

enzymes

@refvalueactivityec
33616oxidase-
33616beta-galactosidase+3.2.1.23
33616alcohol dehydrogenase-1.1.1.1
33616gelatinase-
33616amylase+
33616DNase-
33616caseinase+3.4.21.50
33616catalase+1.11.1.6
33616gamma-glutamyltransferase-2.3.2.2
33616lecithinase-
33616lipase+
33616lysine decarboxylase-4.1.1.18
33616ornithine decarboxylase-4.1.1.17
33616phenylalanine ammonia-lyase-4.3.1.24
33616protease+
33616tryptophan deaminase-
33616urease-3.5.1.5
68382alkaline phosphatase-3.1.3.1
68382esterase (C 4)+
68382esterase lipase (C 8)+
68382lipase (C 14)-
68382leucine arylamidase+3.4.11.1
68382valine arylamidase-
68382cystine arylamidase-3.4.11.3
68382trypsin-3.4.21.4
68382alpha-chymotrypsin-3.4.21.1
68382acid phosphatase+3.1.3.2
68382naphthol-AS-BI-phosphohydrolase+
68382alpha-galactosidase-3.2.1.22
68382beta-galactosidase+3.2.1.23
68382beta-glucuronidase-3.2.1.31
68382alpha-glucosidase+3.2.1.20
68382beta-glucosidase-3.2.1.21
68382N-acetyl-beta-glucosaminidase-3.2.1.52
68382alpha-mannosidase-3.2.1.24
68382alpha-fucosidase-3.2.1.51

API zym

@refControlAlkaline phosphataseEsteraseEsterase LipaseLipaseLeucine arylamidaseValine arylamidaseCystine arylamidaseTrypsinalpha- ChymotrypsinAcid phosphataseNaphthol-AS-BI-phosphohydrolasealpha- Galactosidasebeta- Galactosidasebeta- Glucuronidasealpha- Glucosidasebeta- GlucosidaseN-acetyl-beta- glucosaminidasealpha- Mannosidasealpha- Fucosidase
33616--++-+----++-+-+----

API 50CHac

@refGLYERYDARALARARIBDXYLLXYLADOMDXGALGLUFRUMNESBERHADULINOMANSORMDMMDGNAGAMYARBESCSALCELMALLACMELSACTREINUMLZRAFAMDGLYGXLTGENTURLYXTAGDFUCLFUCDARLLARLGNT2KG5KG
33616------------------------------------------------+

Isolation, sampling and environmental information

isolation

@refgeographic locationcountryorigin.countrycontinentsample typeisolation date
33616Mantes-la-JolieFranceFRAEurope
33616Mantes la JolieFranceFRAEuropeHuman, Spinal fluid1987

Safety information

risk assessment

  • @ref: 33616
  • biosafety level: 2
  • biosafety level comment: Risk group (French classification)

External links

@ref: 33616

culture collection no.: CIP 102763

straininfo link

  • @ref: 92373
  • straininfo: 68620

Reference

@idauthorstitledoi/urlcatalogue
20215Parte, A.C., Sardà Carbasse, J., Meier-Kolthoff, J.P., Reimer, L.C. and Göker, M.List of Prokaryotic names with Standing in Nomenclature (LPSN) moves to the DSMZ10.1099/ijsem.0.004332
33616Curators of the CIPhttps://catalogue-crbip.pasteur.fr/fiche_catalogue.xhtml?crbip=CIP%20102763Collection of Institut Pasteur (CIP 102763)
68371Automatically annotated from API 50CH acid
68382Automatically annotated from API zym
92373Reimer, L.C., Lissin, A.,Schober, I., Witte,J.F., Podstawka, A., Lüken, H., Bunk, B.,Overmann, J.StrainInfo: A central database for resolving microbial strain identifiers10.60712/SI-ID68620.1