Strain identifier

BacDive ID: 134812

Type strain: No

Species: Vibrio metschnikovii

Strain history: CIP <- 1969, M. Véron, Necker Hosp., Paris, France <- NCTC <- 1954, K. Zinnemann: strain Berlin, Vibrio proteus

NCBI tax ID(s): 28172 (species)

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General

@ref: 33462

BacDive-ID: 134812

keywords: genome sequence, Bacteria, facultative anaerobe, mesophilic, motile

description: Vibrio metschnikovii CIP 69.15 is a facultative anaerobe, mesophilic, motile bacterium of the family Vibrionaceae.

NCBI tax id

  • NCBI tax id: 28172
  • Matching level: species

strain history

  • @ref: 33462
  • history: CIP <- 1969, M. Véron, Necker Hosp., Paris, France <- NCTC <- 1954, K. Zinnemann: strain Berlin, Vibrio proteus

doi: 10.13145/bacdive134812.20230509.8.1

Name and taxonomic classification

LPSN

  • @ref: 20215
  • description: domain/bacteria
  • keyword: phylum/pseudomonadota
  • domain: Bacteria
  • phylum: Pseudomonadota
  • class: Gammaproteobacteria
  • order: Vibrionales
  • family: Vibrionaceae
  • genus: Vibrio
  • species: Vibrio metschnikovii
  • full scientific name: Vibrio metschnikovii Gamaleia 1888 (Approved Lists 1980)

@ref: 33462

domain: Bacteria

phylum: Proteobacteria

class: Gammaproteobacteria

order: Vibrionales

family: Vibrionaceae

genus: Vibrio

species: Vibrio metschnikovii

type strain: no

Morphology

cell morphology

@refmotilityconfidencegram staincell shape
69480yes95.738
6948099.975negative
33462yesnegativerod-shaped

Culture and growth conditions

culture medium

@refnamegrowthcompositionlink
33462Marine agar (MA)yesDistilled water make up to (1000.000 ml);Marine agar (55.100 g)
33462CIP Medium 13yeshttps://catalogue-crbip.pasteur.fr/fiche_milieu.xhtml?crbip=13

culture temp

@refgrowthtypetemperaturerange
33462positivegrowth25mesophilic
33462positivegrowth15-41
33462nogrowth5psychrophilic

Physiology and metabolism

oxygen tolerance

  • @ref: 33462
  • oxygen tolerance: facultative anaerobe

spore formation

@refspore formationconfidence
69481no100
69480no99.993

halophily

@refsaltgrowthtested relationconcentration
33462NaClpositivegrowth2-8 %
33462NaClnogrowth0 %
33462NaClnogrowth10 %

metabolite utilization

@refmetaboliteutilization activitykind of utilization testedChebi-ID
68371Potassium 5-ketogluconate-builds acid from
68371Potassium 2-ketogluconate-builds acid from
68371gluconate+builds acid from24265
68371L-arabitol-builds acid from18403
68371D-arabitol-builds acid from18333
68371L-fucose-builds acid from18287
68371D-fucose-builds acid from28847
68371D-tagatose-builds acid from16443
68371D-lyxose-builds acid from62318
68371turanose+builds acid from32528
68371gentiobiose-builds acid from28066
68371xylitol-builds acid from17151
68371glycogen+builds acid from28087
68371starch+builds acid from28017
68371raffinose-builds acid from16634
68371melezitose-builds acid from6731
68371inulin-builds acid from15443
68371trehalose+builds acid from27082
68371sucrose+builds acid from17992
68371melibiose-builds acid from28053
68371lactose-builds acid from17716
68371maltose+builds acid from17306
68371cellobiose-builds acid from17057
68371salicin-builds acid from17814
68371amygdalin-builds acid from27613
68371N-acetylglucosamine+builds acid from59640
68371methyl alpha-D-glucopyranoside-builds acid from320061
68371methyl alpha-D-mannoside-builds acid from43943
68371D-sorbitol-builds acid from17924
68371D-mannitol+builds acid from16899
68371myo-inositol+builds acid from17268
68371galactitol-builds acid from16813
68371L-rhamnose-builds acid from62345
68371L-sorbose-builds acid from17266
68371D-mannose+builds acid from16024
68371D-fructose+builds acid from15824
68371D-glucose+builds acid from17634
68371D-galactose+builds acid from12936
68371methyl beta-D-xylopyranoside-builds acid from74863
68371ribitol-builds acid from15963
68371L-xylose-builds acid from65328
68371D-xylose-builds acid from65327
68371D-ribose+builds acid from16988
68371L-arabinose-builds acid from30849
68371D-arabinose-builds acid from17108
68371erythritol-builds acid from17113
33462citrate+carbon source16947
33462esculin+hydrolysis4853
33462glucose+fermentation17234
33462lactose-fermentation17716
33462nitrate-reduction17632
33462nitrite-reduction16301
33462sodium thiosulfate-builds gas from132112
33462nitrate+respiration17632

antibiotic resistance

  • @ref: 33462
  • metabolite: 0129 (2,4-Diamino-6,7-di-iso-propylpteridine phosphate)
  • is antibiotic: yes
  • is sensitive: yes
  • is resistant: no

metabolite production

  • @ref: 33462
  • Chebi-ID: 35581
  • metabolite: indole
  • production: yes

metabolite tests

@refChebi-IDmetabolitevoges-proskauer-testmethylred-test
3346215688acetoin+
3346217234glucose+

enzymes

@refvalueactivityec
33462oxidase-
33462beta-galactosidase+3.2.1.23
33462alcohol dehydrogenase-1.1.1.1
33462gelatinase+
33462amylase+
33462DNase+
33462caseinase+3.4.21.50
33462catalase+1.11.1.6
33462tween esterase+
33462gamma-glutamyltransferase-2.3.2.2
33462lecithinase+
33462lipase+
33462lysine decarboxylase+4.1.1.18
33462ornithine decarboxylase-4.1.1.17
33462phenylalanine ammonia-lyase-4.3.1.24
33462protease+
33462tryptophan deaminase-
33462urease-3.5.1.5
68382alkaline phosphatase+3.1.3.1
68382esterase (C 4)+
68382esterase lipase (C 8)+
68382lipase (C 14)-
68382leucine arylamidase+3.4.11.1
68382valine arylamidase-
68382cystine arylamidase-3.4.11.3
68382trypsin-3.4.21.4
68382alpha-chymotrypsin-3.4.21.1
68382acid phosphatase+3.1.3.2
68382naphthol-AS-BI-phosphohydrolase+
68382alpha-galactosidase-3.2.1.22
68382beta-galactosidase+3.2.1.23
68382beta-glucuronidase-3.2.1.31
68382alpha-glucosidase+3.2.1.20
68382beta-glucosidase-3.2.1.21
68382N-acetyl-beta-glucosaminidase+3.2.1.52
68382alpha-mannosidase-3.2.1.24
68382alpha-fucosidase-3.2.1.51

API zym

@refControlAlkaline phosphataseEsteraseEsterase LipaseLipaseLeucine arylamidaseValine arylamidaseCystine arylamidaseTrypsinalpha- ChymotrypsinAcid phosphataseNaphthol-AS-BI-phosphohydrolasealpha- Galactosidasebeta- Galactosidasebeta- Glucuronidasealpha- Glucosidasebeta- GlucosidaseN-acetyl-beta- glucosaminidasealpha- Mannosidasealpha- Fucosidase
33462-+++-+----++-+-+-+--

API 50CHac

@refGLYERYDARALARARIBDXYLLXYLADOMDXGALGLUFRUMNESBERHADULINOMANSORMDMMDGNAGAMYARBESCSALCELMALLACMELSACTREINUMLZRAFAMDGLYGXLTGENTURLYXTAGDFUCLFUCDARLLARLGNT2KG5KG
33462+/----+----++++---++---+-+/-+/---+--++---++--+------+--

API biotype100

@refGLUFRUGALTREMNESBEMELSACRAFMTEMALLACLTEMbGaMaGaCELGENMbGuESCRIBARAXYLPLERHAFUCMLZDARLLARLXLTDULTAGGLYINOMANMTLTURSORADOHBGLYXERYMDG3MDGSATMUCLTATDTATMTATDMLTLMLTCATETATETTECITGRTGAT2KG5KGTRYNAGGNTPACPATpOBEQATGTEmOBEBATPPATCMTTGEBETPCEABTHINLATCAPCYTHISSUCFUMGREGYTAVTETNTTNGLNITA3OBUAPTGTTPRODALALALASERMNTPROPTYR2KT
33462+++-+--+-++------+++-----------+++---------------+---+-----++--------------+--+++-----+--++++++----

Safety information

risk assessment

  • @ref: 33462
  • biosafety level: 2
  • biosafety level comment: Risk group (French classification)

Sequence information

Genome sequences

@refdescriptionaccessionassembly leveldatabaseNCBI tax ID
66792Vibrio metschnikovii NCTC8563GCA_900460305contigncbi28172
66792Vibrio metschnikovii strain NCTC856328172.7wgspatric28172
66792Vibrio metschnikovii NCTC 85632806310676draftimg28172

Genome-based predictions

predictions

traitpredictionconfidencetraining_data
spore-formingno100no
motileyes90.054no
gram-positiveno98.659no
anaerobicno93.32no
halophileno50.8no
spore-formingno96.026no
glucose-utilyes94.385no
flagellatedyes86.737no
aerobicyes82.614no
thermophileno98.169yes
glucose-fermentyes87.398no

External links

@ref: 33462

culture collection no.: CIP 69.15, NCTC 8563

straininfo link

  • @ref: 92266
  • straininfo: 5096

Reference

@idauthorstitledoi/urlcatalogue
20215Parte, A.C., Sardà Carbasse, J., Meier-Kolthoff, J.P., Reimer, L.C. and Göker, M.List of Prokaryotic names with Standing in Nomenclature (LPSN) moves to the DSMZ10.1099/ijsem.0.004332
33462Curators of the CIPhttps://catalogue-crbip.pasteur.fr/fiche_catalogue.xhtml?crbip=CIP%2069.15Collection of Institut Pasteur (CIP 69.15)
66792Julia Koblitz, Joaquim Sardà, Lorenz Christian Reimer, Boyke Bunk, Jörg OvermannAutomatically annotated for the DiASPora project (Digital Approaches for the Synthesis of Poorly Accessible Biodiversity Information)https://diaspora-project.de/progress.html#genomes
68371Automatically annotated from API 50CH acid
68382Automatically annotated from API zym
69480Julia Koblitz, Joaquim Sardà, Lorenz Christian Reimer, Boyke Bunk, Jörg OvermannPredictions based on genome sequence made in the Diaspora project (Digital Approaches for the Synthesis of Poorly Accessible Biodiversity Information)https://diaspora-project.de/progress.html#genomes
69481Xiao-Yin To, René Mreches, Martin Binder, Alice C. McHardy, Philipp C. MünchPredictions based on the model GenomeNet Sporulation v. 110.21203/rs.3.rs-2527258/v1
92266Reimer, L.C., Lissin, A.,Schober, I., Witte,J.F., Podstawka, A., Lüken, H., Bunk, B.,Overmann, J.StrainInfo: A central database for resolving microbial strain identifiers10.60712/SI-ID5096.1