Strain identifier

BacDive ID: 134786

Type strain: No

Species: Delftia acidovorans

Strain history: CIP <- 1964, ATCC <- P.H. Gray, Pseudomonas indoloxidans

NCBI tax ID(s): 80866 (species)

For citation purpose refer to the digital object identifier (doi) of the current version.
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General

@ref: 33431

BacDive-ID: 134786

DSM-Number: 46607

keywords: 16S sequence, Bacteria, mesophilic

description: Delftia acidovorans CIP 64.36 is a mesophilic bacterium that was isolated from Soil.

NCBI tax id

  • NCBI tax id: 80866
  • Matching level: species

strain history

@refhistory
67770J. Tamaoka KS 0080 <-- AJ 2074 <-- ATCC 9355 <-- P. H. H. Gray.
67770J. Tamaoka KS 0089 <-- NCIB 2760 <-- NCTC 2760 <-- P. H. H. Gray.
33431CIP <- 1964, ATCC <- P.H. Gray, Pseudomonas indoloxidans

doi: 10.13145/bacdive134786.20230509.8.1

Name and taxonomic classification

LPSN

  • @ref: 20215
  • description: domain/bacteria
  • keyword: phylum/pseudomonadota
  • domain: Bacteria
  • phylum: Pseudomonadota
  • class: Betaproteobacteria
  • order: Burkholderiales
  • family: Comamonadaceae
  • genus: Delftia
  • species: Delftia acidovorans
  • full scientific name: Delftia acidovorans (den Dooren de Jong 1926) Wen et al. 1999
  • synonyms

    @refsynonym
    20215Pseudomonas acidovorans
    20215Comamonas acidovorans

@ref: 33431

domain: Bacteria

phylum: Proteobacteria

class: Betaproteobacteria

order: Burkholderiales

family: Comamonadaceae

genus: Delftia

species: Delftia acidovorans

type strain: no

Culture and growth conditions

culture medium

@refnamegrowthcompositionlink
33431MEDIUM 3 - Columbia agaryesColumbia agar (39.000 g);distilled water (1000.000 ml)
33431CIP Medium 3yeshttps://catalogue-crbip.pasteur.fr/fiche_milieu.xhtml?crbip=3

culture temp

@refgrowthtypetemperaturerange
33431positivegrowth30mesophilic
67770positivegrowth30mesophilic

Physiology and metabolism

observation

  • @ref: 67770
  • observation: quinones: Q-8

metabolite utilization

@refChebi-IDmetaboliteutilization activitykind of utilization tested
6836925115malate+assimilation
6836917128adipate+assimilation
6836927689decanoate-assimilation
6836924265gluconate+assimilation
6836917306maltose-assimilation
6836959640N-acetylglucosamine-assimilation
6836916899D-mannitol+assimilation
6836916024D-mannose-assimilation
6836930849L-arabinose-assimilation
6836917634D-glucose-assimilation
683695291gelatin-hydrolysis
683694853esculin-hydrolysis
6836916199urea-hydrolysis
6836929016arginine-hydrolysis
6836917634D-glucose-fermentation
6836927897tryptophan-energy source
6836917632nitrate+reduction

metabolite production

  • @ref: 68369
  • Chebi-ID: 35581
  • metabolite: indole
  • production: no

metabolite tests

  • @ref: 68369
  • Chebi-ID: 35581
  • metabolite: indole
  • indole test: -

enzymes

@refvalueactivityec
68369cytochrome oxidase+1.9.3.1
68369gelatinase-
68369beta-glucosidase-3.2.1.21
68369urease-3.5.1.5
68369arginine dihydrolase-3.5.3.6
68382alkaline phosphatase-3.1.3.1
68382esterase (C 4)+
68382esterase lipase (C 8)+
68382lipase (C 14)-
68382leucine arylamidase+3.4.11.1
68382valine arylamidase-
68382cystine arylamidase-3.4.11.3
68382trypsin-3.4.21.4
68382alpha-chymotrypsin-3.4.21.1
68382acid phosphatase+3.1.3.2
68382naphthol-AS-BI-phosphohydrolase-
68382alpha-galactosidase-3.2.1.22
68382beta-galactosidase-3.2.1.23
68382beta-glucuronidase-3.2.1.31
68382alpha-glucosidase-3.2.1.20
68382beta-glucosidase-3.2.1.21
68382N-acetyl-beta-glucosaminidase-3.2.1.52
68382alpha-mannosidase-3.2.1.24
68382alpha-fucosidase-3.2.1.51

API zym

@refControlAlkaline phosphataseEsteraseEsterase LipaseLipaseLeucine arylamidaseValine arylamidaseCystine arylamidaseTrypsinalpha- ChymotrypsinAcid phosphataseNaphthol-AS-BI-phosphohydrolasealpha- Galactosidasebeta- Galactosidasebeta- Glucuronidasealpha- Glucosidasebeta- GlucosidaseN-acetyl-beta- glucosaminidasealpha- Mannosidasealpha- Fucosidase
44435--++-+----+---------

API 20NE

@refNO3TRPGLU_ FermADH ArgUREESCGELPNPGGLU_ AssimARAMNEMANNAGMALGNTCAPADIMLTCITPACOX
44435+----------+--+-++-++

Isolation, sampling and environmental information

isolation

@refsample type
44435Soil
33431Environment, Soil

isolation source categories

  • Cat1: #Environmental
  • Cat2: #Terrestrial
  • Cat3: #Soil

taxonmaps

  • @ref: 69479
  • File name: preview.99_701.png
  • url: https://microbeatlas.org/index.html?action=taxon&taxon_id=90_1;96_431;97_492;98_563;99_701&stattab=map
  • Last taxonomy: Delftia
  • 16S sequence: AB020186
  • Sequence Identity:
  • Total samples: 58111
  • soil counts: 6069
  • aquatic counts: 15249
  • animal counts: 31574
  • plant counts: 5219

Safety information

risk assessment

  • @ref: 33431
  • biosafety level: 1
  • biosafety level comment: Risk group (French classification)

Sequence information

16S sequences

  • @ref: 67770
  • description: Delftia acidovorans gene for 16S rRNA, partial sequence
  • accession: AB020186
  • length: 1481
  • database: ena
  • NCBI tax ID: 80866

GC content

@refGC-contentmethod
6777066.6high performance liquid chromatography (HPLC)
6777066.3high performance liquid chromatography (HPLC)

External links

@ref: 33431

culture collection no.: CIP 64.36, ATCC 9355, CCM 283, LMG 1801, NCIMB 9153, CCUG 1822, NCTC 2760, IFO 3783, JCM 6218, IAM 14419, IFO 13582, NBRC 13582, JCM 6220, ATCC 13751, DSM 46607, IAM 14421, NCIMB 2760

straininfo link

  • @ref: 92247
  • straininfo: 34629

literature

  • Pubmed-ID: 8514635
  • title: Synthesis and antimicrobial activity of sperabillin derivatives.
  • authors: Hida T, Tsubotani S, Katayama N, Funabashi Y, Natsugari H, Harada S
  • journal: J Antibiot (Tokyo)
  • DOI: 10.7164/antibiotics.46.803
  • year: 1993
  • mesh: Amidines/chemical synthesis/pharmacology, Animals, Anti-Bacterial Agents/*chemical synthesis/pharmacology, Lethal Dose 50, Mice, Microbial Sensitivity Tests, Structure-Activity Relationship

Reference

@idauthorstitledoi/urlcatalogue
20215Parte, A.C., Sardà Carbasse, J., Meier-Kolthoff, J.P., Reimer, L.C. and Göker, M.List of Prokaryotic names with Standing in Nomenclature (LPSN) moves to the DSMZ10.1099/ijsem.0.004332
33431Curators of the CIPhttps://catalogue-crbip.pasteur.fr/fiche_catalogue.xhtml?crbip=CIP%2064.36Collection of Institut Pasteur (CIP 64.36)
44435Curators of the CCUGhttps://www.ccug.se/strain?id=1822Culture Collection University of Gothenburg (CCUG) (CCUG 1822)
67770Curators of the JCMhttps://jcm.brc.riken.jp/en/
68369Automatically annotated from API 20NE
68382Automatically annotated from API zym
69479João F Matias Rodrigues, Janko Tackmann,Gregor Rot, Thomas SB Schmidt, Lukas Malfertheiner, Mihai Danaila,Marija Dmitrijeva, Daniela Gaio, Nicolas Näpflin and Christian von Mering. University of Zurich.MicrobeAtlas 1.0 betahttps://microbeatlas.org/
92247Reimer, L.C., Lissin, A.,Schober, I., Witte,J.F., Podstawka, A., Lüken, H., Bunk, B.,Overmann, J.StrainInfo: A central database for resolving microbial strain identifiers10.60712/SI-ID34629.1