Strain identifier
BacDive ID: 134786
Type strain:
Species: Delftia acidovorans
Strain history: CIP <- 1964, ATCC <- P.H. Gray, Pseudomonas indoloxidans
NCBI tax ID(s): 80866 (species)
General
@ref: 33431
BacDive-ID: 134786
DSM-Number: 46607
keywords: 16S sequence, Bacteria, mesophilic
description: Delftia acidovorans CIP 64.36 is a mesophilic bacterium that was isolated from Soil.
NCBI tax id
- NCBI tax id: 80866
- Matching level: species
strain history
@ref | history |
---|---|
67770 | J. Tamaoka KS 0080 <-- AJ 2074 <-- ATCC 9355 <-- P. H. H. Gray. |
67770 | J. Tamaoka KS 0089 <-- NCIB 2760 <-- NCTC 2760 <-- P. H. H. Gray. |
33431 | CIP <- 1964, ATCC <- P.H. Gray, Pseudomonas indoloxidans |
doi: 10.13145/bacdive134786.20230509.8.1
Name and taxonomic classification
LPSN
- @ref: 20215
- description: domain/bacteria
- keyword: phylum/pseudomonadota
- domain: Bacteria
- phylum: Pseudomonadota
- class: Betaproteobacteria
- order: Burkholderiales
- family: Comamonadaceae
- genus: Delftia
- species: Delftia acidovorans
- full scientific name: Delftia acidovorans (den Dooren de Jong 1926) Wen et al. 1999
synonyms
@ref synonym 20215 Pseudomonas acidovorans 20215 Comamonas acidovorans
@ref: 33431
domain: Bacteria
phylum: Proteobacteria
class: Betaproteobacteria
order: Burkholderiales
family: Comamonadaceae
genus: Delftia
species: Delftia acidovorans
type strain: no
Culture and growth conditions
culture medium
@ref | name | growth | composition | link |
---|---|---|---|---|
33431 | MEDIUM 3 - Columbia agar | yes | Columbia agar (39.000 g);distilled water (1000.000 ml) | |
33431 | CIP Medium 3 | yes | https://catalogue-crbip.pasteur.fr/fiche_milieu.xhtml?crbip=3 |
culture temp
@ref | growth | type | temperature | range |
---|---|---|---|---|
33431 | positive | growth | 30 | mesophilic |
67770 | positive | growth | 30 | mesophilic |
Physiology and metabolism
observation
- @ref: 67770
- observation: quinones: Q-8
metabolite utilization
@ref | Chebi-ID | metabolite | utilization activity | kind of utilization tested |
---|---|---|---|---|
68369 | 25115 | malate | + | assimilation |
68369 | 17128 | adipate | + | assimilation |
68369 | 27689 | decanoate | - | assimilation |
68369 | 24265 | gluconate | + | assimilation |
68369 | 17306 | maltose | - | assimilation |
68369 | 59640 | N-acetylglucosamine | - | assimilation |
68369 | 16899 | D-mannitol | + | assimilation |
68369 | 16024 | D-mannose | - | assimilation |
68369 | 30849 | L-arabinose | - | assimilation |
68369 | 17634 | D-glucose | - | assimilation |
68369 | 5291 | gelatin | - | hydrolysis |
68369 | 4853 | esculin | - | hydrolysis |
68369 | 16199 | urea | - | hydrolysis |
68369 | 29016 | arginine | - | hydrolysis |
68369 | 17634 | D-glucose | - | fermentation |
68369 | 27897 | tryptophan | - | energy source |
68369 | 17632 | nitrate | + | reduction |
metabolite production
- @ref: 68369
- Chebi-ID: 35581
- metabolite: indole
- production: no
metabolite tests
- @ref: 68369
- Chebi-ID: 35581
- metabolite: indole
- indole test: -
enzymes
@ref | value | activity | ec |
---|---|---|---|
68369 | cytochrome oxidase | + | 1.9.3.1 |
68369 | gelatinase | - | |
68369 | beta-glucosidase | - | 3.2.1.21 |
68369 | urease | - | 3.5.1.5 |
68369 | arginine dihydrolase | - | 3.5.3.6 |
68382 | alkaline phosphatase | - | 3.1.3.1 |
68382 | esterase (C 4) | + | |
68382 | esterase lipase (C 8) | + | |
68382 | lipase (C 14) | - | |
68382 | leucine arylamidase | + | 3.4.11.1 |
68382 | valine arylamidase | - | |
68382 | cystine arylamidase | - | 3.4.11.3 |
68382 | trypsin | - | 3.4.21.4 |
68382 | alpha-chymotrypsin | - | 3.4.21.1 |
68382 | acid phosphatase | + | 3.1.3.2 |
68382 | naphthol-AS-BI-phosphohydrolase | - | |
68382 | alpha-galactosidase | - | 3.2.1.22 |
68382 | beta-galactosidase | - | 3.2.1.23 |
68382 | beta-glucuronidase | - | 3.2.1.31 |
68382 | alpha-glucosidase | - | 3.2.1.20 |
68382 | beta-glucosidase | - | 3.2.1.21 |
68382 | N-acetyl-beta-glucosaminidase | - | 3.2.1.52 |
68382 | alpha-mannosidase | - | 3.2.1.24 |
68382 | alpha-fucosidase | - | 3.2.1.51 |
API zym
@ref | Control | Alkaline phosphatase | Esterase | Esterase Lipase | Lipase | Leucine arylamidase | Valine arylamidase | Cystine arylamidase | Trypsin | alpha- Chymotrypsin | Acid phosphatase | Naphthol-AS-BI-phosphohydrolase | alpha- Galactosidase | beta- Galactosidase | beta- Glucuronidase | alpha- Glucosidase | beta- Glucosidase | N-acetyl-beta- glucosaminidase | alpha- Mannosidase | alpha- Fucosidase |
---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
44435 | - | - | + | + | - | + | - | - | - | - | + | - | - | - | - | - | - | - | - | - |
API 20NE
@ref | NO3 | TRP | GLU_ Ferm | ADH Arg | URE | ESC | GEL | PNPG | GLU_ Assim | ARA | MNE | MAN | NAG | MAL | GNT | CAP | ADI | MLT | CIT | PAC | OX |
---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
44435 | + | - | - | - | - | - | - | - | - | - | - | + | - | - | + | - | + | + | - | + | + |
Isolation, sampling and environmental information
isolation
@ref | sample type |
---|---|
44435 | Soil |
33431 | Environment, Soil |
isolation source categories
- Cat1: #Environmental
- Cat2: #Terrestrial
- Cat3: #Soil
taxonmaps
- @ref: 69479
- File name: preview.99_701.png
- url: https://microbeatlas.org/index.html?action=taxon&taxon_id=90_1;96_431;97_492;98_563;99_701&stattab=map
- Last taxonomy: Delftia
- 16S sequence: AB020186
- Sequence Identity:
- Total samples: 58111
- soil counts: 6069
- aquatic counts: 15249
- animal counts: 31574
- plant counts: 5219
Safety information
risk assessment
- @ref: 33431
- biosafety level: 1
- biosafety level comment: Risk group (French classification)
Sequence information
16S sequences
- @ref: 67770
- description: Delftia acidovorans gene for 16S rRNA, partial sequence
- accession: AB020186
- length: 1481
- database: ena
- NCBI tax ID: 80866
GC content
@ref | GC-content | method |
---|---|---|
67770 | 66.6 | high performance liquid chromatography (HPLC) |
67770 | 66.3 | high performance liquid chromatography (HPLC) |
External links
@ref: 33431
culture collection no.: CIP 64.36, ATCC 9355, CCM 283, LMG 1801, NCIMB 9153, CCUG 1822, NCTC 2760, IFO 3783, JCM 6218, IAM 14419, IFO 13582, NBRC 13582, JCM 6220, ATCC 13751, DSM 46607, IAM 14421, NCIMB 2760
straininfo link
- @ref: 92247
- straininfo: 34629
literature
- Pubmed-ID: 8514635
- title: Synthesis and antimicrobial activity of sperabillin derivatives.
- authors: Hida T, Tsubotani S, Katayama N, Funabashi Y, Natsugari H, Harada S
- journal: J Antibiot (Tokyo)
- DOI: 10.7164/antibiotics.46.803
- year: 1993
- mesh: Amidines/chemical synthesis/pharmacology, Animals, Anti-Bacterial Agents/*chemical synthesis/pharmacology, Lethal Dose 50, Mice, Microbial Sensitivity Tests, Structure-Activity Relationship
Reference
@id | authors | title | doi/url | catalogue |
---|---|---|---|---|
20215 | Parte, A.C., Sardà Carbasse, J., Meier-Kolthoff, J.P., Reimer, L.C. and Göker, M. | List of Prokaryotic names with Standing in Nomenclature (LPSN) moves to the DSMZ | 10.1099/ijsem.0.004332 | |
33431 | Curators of the CIP | https://catalogue-crbip.pasteur.fr/fiche_catalogue.xhtml?crbip=CIP%2064.36 | Collection of Institut Pasteur (CIP 64.36) | |
44435 | Curators of the CCUG | https://www.ccug.se/strain?id=1822 | Culture Collection University of Gothenburg (CCUG) (CCUG 1822) | |
67770 | Curators of the JCM | https://jcm.brc.riken.jp/en/ | ||
68369 | Automatically annotated from API 20NE | |||
68382 | Automatically annotated from API zym | |||
69479 | João F Matias Rodrigues, Janko Tackmann,Gregor Rot, Thomas SB Schmidt, Lukas Malfertheiner, Mihai Danaila,Marija Dmitrijeva, Daniela Gaio, Nicolas Näpflin and Christian von Mering. University of Zurich. | MicrobeAtlas 1.0 beta | https://microbeatlas.org/ | |
92247 | Reimer, L.C., Lissin, A.,Schober, I., Witte,J.F., Podstawka, A., Lüken, H., Bunk, B.,Overmann, J. | StrainInfo: A central database for resolving microbial strain identifiers | 10.60712/SI-ID34629.1 |