Strain identifier
BacDive ID: 134783
Type strain: 
Species: Acinetobacter baumannii
Strain history: CIP <- 2012, A. Nemec, Inst. Pasteur, Paris, France: strain NIPH 528
NCBI tax ID(s): 1217636 (strain), 470 (species)
version 9.3 (current version)
General
@ref: 33428
BacDive-ID: 134783
keywords: genome sequence, Bacteria, aerobe, mesophilic, Gram-negative
description: Acinetobacter baumannii CIP 110436 is an aerobe, mesophilic, Gram-negative bacterium of the family Moraxellaceae.
NCBI tax id
| NCBI tax id | Matching level |
|---|---|
| 1217636 | strain |
| 470 | species |
strain history
| @ref | history |
|---|---|
| 33428 | 2012, A. Nemec, Inst. Pasteur, Paris, France: strain NIPH 528 |
| 33428 | CIP <- 2012, A. Nemec, Inst. Pasteur, Paris, France: strain NIPH 528 |
doi: 10.13145/bacdive134783.20250331.9.3
Name and taxonomic classification
LPSN
- @ref: 20215
- description: domain/bacteria
- keyword: phylum/pseudomonadota
- domain: Bacteria
- phylum: Pseudomonadota
- class: Gammaproteobacteria
- order: Pseudomonadales
- family: Moraxellaceae
- genus: Acinetobacter
- species: Acinetobacter baumannii
- full scientific name: Acinetobacter baumannii Bouvet and Grimont 1986
@ref: 33428
domain: Bacteria
phylum: Proteobacteria
class: Gammaproteobacteria
order: Pseudomonadales
family: Moraxellaceae
genus: Acinetobacter
species: Acinetobacter baumannii
type strain: no
Morphology
cell morphology
| @ref | gram stain | confidence | cell shape | motility |
|---|---|---|---|---|
| 125438 | negative | 98 | ||
| 33428 | negative | oval-shaped | no |
Culture and growth conditions
culture medium
| @ref | name | growth | composition | link |
|---|---|---|---|---|
| 33428 | MEDIUM 72- for trypto casein soja agar | yes | Distilled water make up to (1000.000 ml);Trypto casein soy agar (40.000 g) | |
| 33428 | CIP Medium 72 | yes | https://catalogue-crbip.pasteur.fr/fiche_milieu.xhtml?crbip=72 |
culture temp
| @ref | growth | type | temperature |
|---|---|---|---|
| 33428 | positive | growth | 30 |
| 62381 | positive | growth | 30-37 |
Physiology and metabolism
oxygen tolerance
| @ref | oxygen tolerance | confidence |
|---|---|---|
| 62381 | aerobe | |
| 125439 | obligate aerobe | 96.6 |
spore formation
| @ref | spore formation | confidence |
|---|---|---|
| 125438 | no | 91.94 |
| 125439 | no | 94.1 |
Isolation, sampling and environmental information
isolation
| @ref | geographic location | country | origin.country | continent | sample type | sampling date | isolation date |
|---|---|---|---|---|---|---|---|
| 33428 | Rotterdam | Netherlands | NLD | Europe | |||
| 62381 | Rotterdam | Netherlands | NLD | Europe | Human urine,nosocomial outbreak (strain no. 9) | 1982 | |
| 33428 | Rotterdam | Netherlands | NLD | Europe | Human, Urine | 1982 |
isolation source categories
| Cat1 | Cat2 | Cat3 |
|---|---|---|
| #Host Body Product | #Fluids | #Urine |
| #Host | #Human | |
| #Infection | #Medical environment |
Safety information
risk assessment
- @ref: 33428
- biosafety level: 1
- biosafety level comment: Risk group (French classification)
Sequence information
Genome sequences
| @ref | description | accession | assembly level | database | NCBI tax ID |
|---|---|---|---|---|---|
| 66792 | Acinetobacter baumannii NIPH 528 | GCA_000369285 | scaffold | ncbi | 1217636 |
| 66792 | Acinetobacter baumannii NIPH 528 | 1217636.3 | wgs | patric | 1217636 |
| 66792 | Acinetobacter baumannii NIPH 528 | 2529293010 | draft | img | 1217636 |
Genome-based predictions
predictions
| @ref | model | trait | description | prediction | confidence | training_data |
|---|---|---|---|---|---|---|
| 125438 | gram-positive | gram-positive | Positive reaction to Gram-staining | no | 98 | no |
| 125438 | anaerobic | anaerobic | Ability to grow under anoxygenic conditions (including facultative anaerobes) | no | 98.37 | yes |
| 125438 | aerobic | aerobic | Ability to grow under oxygenic conditions (including facultative aerobes) | yes | 89.581 | yes |
| 125438 | spore-forming | spore-forming | Ability to form endo- or exospores | no | 91.94 | no |
| 125438 | thermophile | thermophilic | Ability to grow at temperatures above or equal to 45°C | no | 99.975 | yes |
| 125438 | motile2+ | flagellated | Ability to perform flagellated movement | no | 77.273 | no |
| 125439 | BacteriaNet | spore_formation | Ability to form endo- or exospores | no | 94.1 | |
| 125439 | BacteriaNet | motility | Ability to perform movement | no | 52.1 | |
| 125439 | BacteriaNet | gram_stain | Reaction to gram-staining | negative | 89.8 | |
| 125439 | BacteriaNet | oxygen_tolerance | Oxygenic conditions needed for growth | obligate aerobe | 96.6 |
External links
@ref: 33428
culture collection no.: CIP 110436, NIPH 528, CCM 7290, LMG 10541, RUH 134, CCUG 60612
straininfo link
- @ref: 92244
- straininfo: 188
literature
| topic | Pubmed-ID | title | authors | journal | DOI | year | mesh | topic2 |
|---|---|---|---|---|---|---|---|---|
| Enzymology | 21722261 | Epidemiological characterization and distribution of carbapenem-resistant Acinetobacter baumannii clinical isolates in Italy. | Mezzatesta ML, D'Andrea MM, Migliavacca R, Giani T, Gona F, Nucleo E, Fugazza G, Pagani L, Rossolini GM, Stefani S | Clin Microbiol Infect | 10.1111/j.1469-0691.2011.03527.x | 2011 | Acinetobacter Infections/*epidemiology/*microbiology, Acinetobacter baumannii/*classification/drug effects/*genetics/isolation & purification, Adolescent, Adult, Aged, Aged, 80 and over, Anti-Bacterial Agents/*pharmacology, Carbapenems/*pharmacology, Child, Child, Preschool, Cluster Analysis, DNA Fingerprinting, DNA, Bacterial/genetics, Electrophoresis, Gel, Pulsed-Field, Female, Genotype, Humans, Infant, Italy/epidemiology, Male, Middle Aged, Molecular Epidemiology, Multilocus Sequence Typing, Young Adult, *beta-Lactam Resistance, beta-Lactamases/genetics | Pathogenicity |
| Pathogenicity | 22020138 | Antibiotic resistance islands in A320 (RUH134), the reference strain for Acinetobacter baumannii global clone 2. | Nigro SJ, Hall RM | J Antimicrob Chemother | 10.1093/jac/dkr447 | 2011 | Acinetobacter baumannii/*drug effects/*genetics, DNA Transposable Elements, DNA, Bacterial/chemistry/genetics, Drug Resistance, Bacterial, *Drug Resistance, Multiple, Bacterial, Genes, Bacterial, *Genomic Islands, Genotype, Humans, Integrons, Molecular Sequence Data, Polymerase Chain Reaction, Sequence Analysis, DNA | Genetics |
| Pathogenicity | 22347396 | Differences in Acinetobacter baumannii strains and host innate immune response determine morbidity and mortality in experimental pneumonia. | de Breij A, Eveillard M, Dijkshoorn L, van den Broek PJ, Nibbering PH, Joly-Guillou ML | PLoS One | 10.1371/journal.pone.0030673 | 2012 | Acinetobacter Infections/immunology/mortality, Acinetobacter baumannii/*immunology/pathogenicity, Animals, Cytokines/analysis/blood, *Immunity, Innate, Inflammation, Lung/immunology, Mice, Morbidity, Mortality, Pneumonia/immunology/*microbiology/mortality | |
| Pathogenicity | 22351684 | Tn6167, an antibiotic resistance island in an Australian carbapenem-resistant Acinetobacter baumannii GC2, ST92 isolate. | Nigro SJ, Hall RM | J Antimicrob Chemother | 10.1093/jac/dks037 | 2012 | Acinetobacter Infections/*microbiology, Acinetobacter baumannii/classification/*drug effects/*genetics/isolation & purification, Anti-Bacterial Agents/*pharmacology, Australia, Carbapenems/*pharmacology, Cluster Analysis, *DNA Transposable Elements, DNA, Bacterial/chemistry/genetics, Gene Order, Genes, Bacterial, Genomic Islands, Humans, Molecular Sequence Data, Multilocus Sequence Typing, Sequence Analysis, DNA, *beta-Lactam Resistance | Phylogeny |
| Pathogenicity | 26666934 | Evolution of AbGRI2-0, the Progenitor of the AbGRI2 Resistance Island in Global Clone 2 of Acinetobacter baumannii. | Blackwell GA, Nigro SJ, Hall RM | Antimicrob Agents Chemother | 10.1128/AAC.02662-15 | 2015 | Acinetobacter baumannii/*drug effects/*genetics, Chromosome Inversion, Chromosomes, Bacterial, Drug Resistance, Multiple, Bacterial/*genetics, *Evolution, Molecular, Genes, Bacterial, *Genomic Islands, Integrons |
Reference
| @id | authors | title | doi/url | catalogue |
|---|---|---|---|---|
| 20215 | Parte, A.C., Sardà Carbasse, J., Meier-Kolthoff, J.P., Reimer, L.C. and Göker, M. | List of Prokaryotic names with Standing in Nomenclature (LPSN) moves to the DSMZ | 10.1099/ijsem.0.004332 | |
| 33428 | Curators of the CIP | https://catalogue-crbip.pasteur.fr/fiche_catalogue.xhtml?crbip=CIP%20110436 | Collection of Institut Pasteur (CIP 110436) | |
| 62381 | Curators of the CCUG | https://www.ccug.se/strain?id=60612 | Culture Collection University of Gothenburg (CCUG) (CCUG 60612) | |
| 66792 | Julia Koblitz, Joaquim Sardà, Lorenz Christian Reimer, Boyke Bunk, Jörg Overmann | Automatically annotated for the DiASPora project (Digital Approaches for the Synthesis of Poorly Accessible Biodiversity Information) | https://diaspora-project.de/progress.html#genomes | |
| 92244 | Reimer, L.C., Lissin, A.,Schober, I., Witte,J.F., Podstawka, A., Lüken, H., Bunk, B.,Overmann, J. | StrainInfo: A central database for resolving microbial strain identifiers | 10.60712/SI-ID188.1 | |
| 125438 | Julia Koblitz, Lorenz Christian Reimer, Rüdiger Pukall, Jörg Overmann | Predicting bacterial phenotypic traits through improved machine learning using high-quality, curated datasets | 10.1101/2024.08.12.607695 | |
| 125439 | Philipp Münch, René Mreches, Martin Binder, Hüseyin Anil Gündüz, Xiao-Yin To, Alice McHardy | deepG: Deep Learning for Genome Sequence Data. R package version 0.3.1 | https://github.com/GenomeNet/deepG |