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Strain identifier

BacDive ID: 134698

Type strain: Yes

Species: Shewanella decolorationis

Strain history: IAM 15094 <-- M. Xu S12.

NCBI tax ID(s): 256839 (species)

For citation purpose refer to the digital object identifier (doi) of the current version.
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General

@ref: 33262

BacDive-ID: 134698

keywords: 16S sequence, Bacteria, mesophilic

description: Shewanella decolorationis CIP 108688 is a mesophilic bacterium of the family Shewanellaceae.

NCBI tax id

  • NCBI tax id: 256839
  • Matching level: species

strain history: IAM 15094 <-- M. Xu S12.

doi: 10.13145/bacdive134698.20221219.7.1

Name and taxonomic classification

LPSN

  • @ref: 20215
  • description: domain/bacteria
  • keyword: phylum/pseudomonadota
  • domain: Bacteria
  • phylum: Pseudomonadota
  • class: Gammaproteobacteria
  • order: Alteromonadales
  • family: Shewanellaceae
  • genus: Shewanella
  • species: Shewanella decolorationis
  • full scientific name: Shewanella decolorationis Xu et al. 2005

@ref: 33262

domain: Bacteria

phylum: Proteobacteria

class: Gammaproteobacteria

order: Alteromonadales

family: Shewanellaceae

genus: Shewanella

species: Shewanella decolorationis

type strain: yes

Morphology

cell morphology

@refmotilityconfidencegram stain
69480yes88.551
6948099.304negative

Culture and growth conditions

culture medium

  • @ref: 33262
  • name: MEDIUM 72- for trypto casein soja agar
  • growth: yes
  • composition: Distilled water make up to (1000.000 ml);Trypto casein soy agar (40.000 g)

culture temp

@refgrowthtypetemperaturerange
33262positivegrowth25mesophilic
67770positivegrowth30mesophilic

Physiology and metabolism

spore formation

  • @ref: 69480
  • spore formation: no
  • confidence: 95.681

halophily

  • @ref: 69480
  • halophily level: non-halophilic
  • confidence: 96.171

observation

  • @ref: 67770
  • observation: quinones: MK-7, Q-8, Q-7

Isolation, sampling and environmental information

isolation

@refgeographic locationcountryorigin.countrycontinentsample type
33262GuangzhouChinaCHNAsia
67770ChinaCHNAsiaActivated sludge of a textile-printing wastewater treatment plant in Guangzhou

taxonmaps

  • @ref: 69479
  • File name: preview.99_4349.png
  • url: https://microbeatlas.org/index.html?action=taxon&taxon_id=90_59;96_126;97_134;98_151;99_4349&stattab=map
  • Last taxonomy: Shewanella decolorationis
  • 16S sequence: AJ609571
  • Sequence Identity:
  • Total samples: 277
  • soil counts: 8
  • aquatic counts: 83
  • animal counts: 185
  • plant counts: 1

Sequence information

16S sequences

  • @ref: 67770
  • description: Shewanella decolorationis partial 16S rRNA gene, type strain CCTCC M 203093T
  • accession: AJ609571
  • length: 1448
  • database: ena
  • NCBI tax ID: 1353536

GC content

  • @ref: 67770
  • GC-content: 49.3
  • method: thermal denaturation, midpoint method (Tm)

External links

@ref: 33262

culture collection no.: CIP 108688, IAM 15094, CCTCC M 203093, JCM 21555, KCTC 23987, NBRC 103170

straininfo link

@refpassport
20218http://www.straininfo.net/strains/841028
20218http://www.straininfo.net/strains/382830
20218http://www.straininfo.net/strains/374029

literature

topicPubmed-IDtitleauthorsjournalDOIyearmeshtopic2
Phylogeny15653901Shewanella decolorationis sp. nov., a dye-decolorizing bacterium isolated from activated sludge of a waste-water treatment plant.Xu M, Guo J, Cen Y, Zhong X, Cao W, Sun GInt J Syst Evol Microbiol10.1099/ijs.0.63157-02005Bacterial Typing Techniques, China, Coloring Agents/*metabolism, DNA, Bacterial/analysis, DNA, Ribosomal/analysis, Genes, rRNA, Molecular Sequence Data, Phylogeny, RNA, Ribosomal, 16S/genetics, Sewage/*microbiology, Shewanella/*classification/genetics/isolation & purification/physiology, *Textile Industry, Waste Disposal, Fluid/*methodsGenetics
Phylogeny22437441Shewanella seohaensis sp. nov., isolated from a tidal flat sediment.Yoon JH, Park S, Jung YT, Lee JSAntonie Van Leeuwenhoek10.1007/s10482-012-9722-22012Base Composition, Cluster Analysis, Cytosol/chemistry, DNA Gyrase/genetics, DNA, Bacterial/chemistry/genetics, DNA, Ribosomal/chemistry/genetics, Fatty Acids/analysis, Geologic Sediments/*microbiology, Molecular Sequence Data, Nucleic Acid Hybridization, Phylogeny, RNA, Ribosomal, 16S/genetics, Republic of Korea, Sequence Analysis, DNA, Shewanella/chemistry/*classification/genetics/*isolation & purification, Ubiquinone/analysis, Vitamin K 2/analysisGenetics

Reference

@idauthorstitledoi/urljournalpubmedcatalogue
20215Parte, A.C., Sardà Carbasse, J., Meier-Kolthoff, J.P., Reimer, L.C. and Göker, M.List of Prokaryotic names with Standing in Nomenclature (LPSN) moves to the DSMZ10.1099/ijsem.0.004332
20218Verslyppe, B., De Smet, W., De Baets, B., De Vos, P., Dawyndt P.StrainInfo introduces electronic passports for microorganisms.10.1016/j.syapm.2013.11.002Syst Appl Microbiol. 37: 42-50 201424321274
33262Curators of the CIPhttps://brclims.pasteur.fr/brcWeb/souche/detail/1/6344 Collection of Institut Pasteur (CIP 108688)
67770Curators of the JCMhttps://jcm.brc.riken.jp/en/
69479João F Matias Rodrigues, Janko Tackmann,Gregor Rot, Thomas SB Schmidt, Lukas Malfertheiner, Mihai Danaila,Marija Dmitrijeva, Daniela Gaio, Nicolas Näpflin and Christian von Mering. University of Zurich.MicrobeAtlas 1.0 betahttps://microbeatlas.org/
69480Julia Koblitz, Joaquim Sardà, Lorenz Christian Reimer, Boyke Bunk, Jörg OvermannPredictions based on genome sequence made in the Diaspora project (Digital Approaches for the Synthesis of Poorly Accessible Biodiversity Information)https://diaspora-project.de/progress.html#genomes