Strain identifier

BacDive ID: 134698

Type strain: Yes

Species: Shewanella decolorationis

Strain Designation: S12

Strain history: CIP <- 2005, IAM <- M. Xu, Guangzhou, China: strain S12

NCBI tax ID(s): 256839 (species)

For citation purpose refer to the digital object identifier (doi) of the current version.
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General

@ref: 33262

BacDive-ID: 134698

keywords: 16S sequence, Bacteria, obligate aerobe, mesophilic, Gram-negative, motile, rod-shaped

description: Shewanella decolorationis S12 is an obligate aerobe, mesophilic, Gram-negative bacterium of the family Shewanellaceae.

NCBI tax id

  • NCBI tax id: 256839
  • Matching level: species

strain history

@refhistory
67770IAM 15094 <-- M. Xu S12.
33262CIP <- 2005, IAM <- M. Xu, Guangzhou, China: strain S12

doi: 10.13145/bacdive134698.20230509.8.1

Name and taxonomic classification

LPSN

  • @ref: 20215
  • description: domain/bacteria
  • keyword: phylum/pseudomonadota
  • domain: Bacteria
  • phylum: Pseudomonadota
  • class: Gammaproteobacteria
  • order: Alteromonadales
  • family: Shewanellaceae
  • genus: Shewanella
  • species: Shewanella decolorationis
  • full scientific name: Shewanella decolorationis Xu et al. 2005

@ref: 33262

domain: Bacteria

phylum: Proteobacteria

class: Gammaproteobacteria

order: Alteromonadales

family: Shewanellaceae

genus: Shewanella

species: Shewanella decolorationis

strain designation: S12

type strain: yes

Morphology

cell morphology

  • @ref: 33262
  • gram stain: negative
  • cell shape: rod-shaped
  • motility: yes

Culture and growth conditions

culture medium

@refnamegrowthcompositionlink
33262MEDIUM 72- for trypto casein soja agaryesDistilled water make up to (1000.000 ml);Trypto casein soy agar (40.000 g)
33262CIP Medium 72yeshttps://catalogue-crbip.pasteur.fr/fiche_milieu.xhtml?crbip=72

culture temp

@refgrowthtypetemperaturerange
33262positivegrowth25mesophilic
67770positivegrowth30mesophilic
33262positivegrowth25-37mesophilic
33262nogrowth5psychrophilic
33262nogrowth10psychrophilic
33262nogrowth41thermophilic

Physiology and metabolism

oxygen tolerance

  • @ref: 33262
  • oxygen tolerance: obligate aerobe

halophily

@refsaltgrowthtested relationconcentration
33262NaClpositivegrowth0-4 %
33262NaClnogrowth6 %
33262NaClnogrowth8 %
33262NaClnogrowth10 %

observation

  • @ref: 67770
  • observation: quinones: MK-7, Q-8, Q-7

metabolite utilization

@refChebi-IDmetaboliteutilization activitykind of utilization tested
3326216947citrate-carbon source
332624853esculin-hydrolysis
3326217632nitrate+reduction
3326216301nitrite+reduction
3326217632nitrate-respiration

antibiotic resistance

  • @ref: 33262
  • metabolite: 0129 (2,4-Diamino-6,7-di-iso-propylpteridine phosphate)
  • is antibiotic: yes
  • is sensitive: no
  • is resistant: yes

metabolite production

  • @ref: 33262
  • Chebi-ID: 35581
  • metabolite: indole
  • production: no

enzymes

@refvalueactivityec
33262oxidase+
33262beta-galactosidase+3.2.1.23
33262alcohol dehydrogenase-1.1.1.1
33262gelatinase+
33262amylase-
33262DNase+
33262caseinase+3.4.21.50
33262catalase+1.11.1.6
33262tween esterase+
33262lecithinase+
33262lipase+
33262lysine decarboxylase-4.1.1.18
33262ornithine decarboxylase+4.1.1.17
33262protease+
33262tryptophan deaminase-
33262urease+3.5.1.5
68382alkaline phosphatase+3.1.3.1
68382esterase (C 4)+
68382esterase lipase (C 8)+
68382lipase (C 14)-
68382leucine arylamidase+3.4.11.1
68382valine arylamidase+
68382cystine arylamidase-3.4.11.3
68382trypsin+3.4.21.4
68382alpha-chymotrypsin+3.4.21.1
68382acid phosphatase+3.1.3.2
68382naphthol-AS-BI-phosphohydrolase+
68382alpha-galactosidase-3.2.1.22
68382beta-galactosidase-3.2.1.23
68382beta-glucuronidase-3.2.1.31
68382alpha-glucosidase+3.2.1.20
68382beta-glucosidase-3.2.1.21
68382N-acetyl-beta-glucosaminidase+3.2.1.52
68382alpha-mannosidase-3.2.1.24
68382alpha-fucosidase-3.2.1.51

API zym

@refControlAlkaline phosphataseEsteraseEsterase LipaseLipaseLeucine arylamidaseValine arylamidaseCystine arylamidaseTrypsinalpha- ChymotrypsinAcid phosphataseNaphthol-AS-BI-phosphohydrolasealpha- Galactosidasebeta- Galactosidasebeta- Glucuronidasealpha- Glucosidasebeta- GlucosidaseN-acetyl-beta- glucosaminidasealpha- Mannosidasealpha- Fucosidase
33262-+++-++-++++---+-+--

API biotype100

@refGLUFRUGALTREMNESBEMELSACRAFMTEMALLACLTEMbGaMaGaCELGENMbGuESCRIBARAXYLPLERHAFUCMLZDARLLARLXLTDULTAGGLYINOMANMTLTURSORADOHBGLYXERYMDG3MDGSATMUCLTATDTATMTATDMLTLMLTCATETATETTECITGRTGAT2KG5KGTRYNAGGNTPACPATpOBEQATGTEmOBEBATPPATCMTTGEBETPCEABTHINLATCAPCYTHISSUCFUMGREGYTAVTETNTTNGLNITA3OBUAPTGTTPRODALALALASERMNTPROPTYR2KT
33262+------+-++--------+--------------------------+-++---------+------------+--++-+++-+---+-+++--++-+++

Isolation, sampling and environmental information

isolation

@refgeographic locationcountryorigin.countrycontinentsample type
33262GuangzhouChinaCHNAsia
67770ChinaCHNAsiaActivated sludge of a textile-printing wastewater treatment plant in Guangzhou
33262GuangzhouChinaCHNAsiaEnvironment, Sludge of textile-printing waste-water treatment plant

taxonmaps

  • @ref: 69479
  • File name: preview.99_4349.png
  • url: https://microbeatlas.org/index.html?action=taxon&taxon_id=90_59;96_126;97_134;98_151;99_4349&stattab=map
  • Last taxonomy: Shewanella decolorationis
  • 16S sequence: AJ609571
  • Sequence Identity:
  • Total samples: 277
  • soil counts: 8
  • aquatic counts: 83
  • animal counts: 185
  • plant counts: 1

Safety information

risk assessment

  • @ref: 33262
  • biosafety level: 1
  • biosafety level comment: Risk group (French classification)

Sequence information

16S sequences

  • @ref: 67770
  • description: Shewanella decolorationis partial 16S rRNA gene, type strain CCTCC M 203093T
  • accession: AJ609571
  • length: 1448
  • database: ena
  • NCBI tax ID: 1353536

GC content

  • @ref: 67770
  • GC-content: 49.3
  • method: thermal denaturation, midpoint method (Tm)

External links

@ref: 33262

culture collection no.: CIP 108688, IAM 15094, CCTCC M 203093, JCM 21555, KCTC 23987, NBRC 103170

straininfo link

  • @ref: 92169
  • straininfo: 129189

literature

topicPubmed-IDtitleauthorsjournalDOIyearmeshtopic2
Phylogeny15653901Shewanella decolorationis sp. nov., a dye-decolorizing bacterium isolated from activated sludge of a waste-water treatment plant.Xu M, Guo J, Cen Y, Zhong X, Cao W, Sun GInt J Syst Evol Microbiol10.1099/ijs.0.63157-02005Bacterial Typing Techniques, China, Coloring Agents/*metabolism, DNA, Bacterial/analysis, DNA, Ribosomal/analysis, Genes, rRNA, Molecular Sequence Data, Phylogeny, RNA, Ribosomal, 16S/genetics, Sewage/*microbiology, Shewanella/*classification/genetics/isolation & purification/physiology, *Textile Industry, Waste Disposal, Fluid/*methodsGenetics
Phylogeny22437441Shewanella seohaensis sp. nov., isolated from a tidal flat sediment.Yoon JH, Park S, Jung YT, Lee JSAntonie Van Leeuwenhoek10.1007/s10482-012-9722-22012Base Composition, Cluster Analysis, Cytosol/chemistry, DNA Gyrase/genetics, DNA, Bacterial/chemistry/genetics, DNA, Ribosomal/chemistry/genetics, Fatty Acids/analysis, Geologic Sediments/*microbiology, Molecular Sequence Data, Nucleic Acid Hybridization, Phylogeny, RNA, Ribosomal, 16S/genetics, Republic of Korea, Sequence Analysis, DNA, Shewanella/chemistry/*classification/genetics/*isolation & purification, Ubiquinone/analysis, Vitamin K 2/analysisGenetics

Reference

@idauthorstitledoi/urlcatalogue
20215Parte, A.C., Sardà Carbasse, J., Meier-Kolthoff, J.P., Reimer, L.C. and Göker, M.List of Prokaryotic names with Standing in Nomenclature (LPSN) moves to the DSMZ10.1099/ijsem.0.004332
33262Curators of the CIPhttps://catalogue-crbip.pasteur.fr/fiche_catalogue.xhtml?crbip=CIP%20108688Collection of Institut Pasteur (CIP 108688)
67770Curators of the JCMhttps://jcm.brc.riken.jp/en/
68382Automatically annotated from API zym
69479João F Matias Rodrigues, Janko Tackmann,Gregor Rot, Thomas SB Schmidt, Lukas Malfertheiner, Mihai Danaila,Marija Dmitrijeva, Daniela Gaio, Nicolas Näpflin and Christian von Mering. University of Zurich.MicrobeAtlas 1.0 betahttps://microbeatlas.org/
92169Reimer, L.C., Lissin, A.,Schober, I., Witte,J.F., Podstawka, A., Lüken, H., Bunk, B.,Overmann, J.StrainInfo: A central database for resolving microbial strain identifiers10.60712/SI-ID129189.1