Strain identifier
BacDive ID: 134698
Type strain:
Species: Shewanella decolorationis
Strain Designation: S12
Strain history: CIP <- 2005, IAM <- M. Xu, Guangzhou, China: strain S12
NCBI tax ID(s): 256839 (species)
General
@ref: 33262
BacDive-ID: 134698
keywords: 16S sequence, Bacteria, obligate aerobe, mesophilic, Gram-negative, motile, rod-shaped
description: Shewanella decolorationis S12 is an obligate aerobe, mesophilic, Gram-negative bacterium of the family Shewanellaceae.
NCBI tax id
- NCBI tax id: 256839
- Matching level: species
strain history
@ref | history |
---|---|
67770 | IAM 15094 <-- M. Xu S12. |
33262 | CIP <- 2005, IAM <- M. Xu, Guangzhou, China: strain S12 |
doi: 10.13145/bacdive134698.20230509.8.1
Name and taxonomic classification
LPSN
- @ref: 20215
- description: domain/bacteria
- keyword: phylum/pseudomonadota
- domain: Bacteria
- phylum: Pseudomonadota
- class: Gammaproteobacteria
- order: Alteromonadales
- family: Shewanellaceae
- genus: Shewanella
- species: Shewanella decolorationis
- full scientific name: Shewanella decolorationis Xu et al. 2005
@ref: 33262
domain: Bacteria
phylum: Proteobacteria
class: Gammaproteobacteria
order: Alteromonadales
family: Shewanellaceae
genus: Shewanella
species: Shewanella decolorationis
strain designation: S12
type strain: yes
Morphology
cell morphology
- @ref: 33262
- gram stain: negative
- cell shape: rod-shaped
- motility: yes
Culture and growth conditions
culture medium
@ref | name | growth | composition | link |
---|---|---|---|---|
33262 | MEDIUM 72- for trypto casein soja agar | yes | Distilled water make up to (1000.000 ml);Trypto casein soy agar (40.000 g) | |
33262 | CIP Medium 72 | yes | https://catalogue-crbip.pasteur.fr/fiche_milieu.xhtml?crbip=72 |
culture temp
@ref | growth | type | temperature | range |
---|---|---|---|---|
33262 | positive | growth | 25 | mesophilic |
67770 | positive | growth | 30 | mesophilic |
33262 | positive | growth | 25-37 | mesophilic |
33262 | no | growth | 5 | psychrophilic |
33262 | no | growth | 10 | psychrophilic |
33262 | no | growth | 41 | thermophilic |
Physiology and metabolism
oxygen tolerance
- @ref: 33262
- oxygen tolerance: obligate aerobe
halophily
@ref | salt | growth | tested relation | concentration |
---|---|---|---|---|
33262 | NaCl | positive | growth | 0-4 % |
33262 | NaCl | no | growth | 6 % |
33262 | NaCl | no | growth | 8 % |
33262 | NaCl | no | growth | 10 % |
observation
- @ref: 67770
- observation: quinones: MK-7, Q-8, Q-7
metabolite utilization
@ref | Chebi-ID | metabolite | utilization activity | kind of utilization tested |
---|---|---|---|---|
33262 | 16947 | citrate | - | carbon source |
33262 | 4853 | esculin | - | hydrolysis |
33262 | 17632 | nitrate | + | reduction |
33262 | 16301 | nitrite | + | reduction |
33262 | 17632 | nitrate | - | respiration |
antibiotic resistance
- @ref: 33262
- metabolite: 0129 (2,4-Diamino-6,7-di-iso-propylpteridine phosphate)
- is antibiotic: yes
- is sensitive: no
- is resistant: yes
metabolite production
- @ref: 33262
- Chebi-ID: 35581
- metabolite: indole
- production: no
enzymes
@ref | value | activity | ec |
---|---|---|---|
33262 | oxidase | + | |
33262 | beta-galactosidase | + | 3.2.1.23 |
33262 | alcohol dehydrogenase | - | 1.1.1.1 |
33262 | gelatinase | + | |
33262 | amylase | - | |
33262 | DNase | + | |
33262 | caseinase | + | 3.4.21.50 |
33262 | catalase | + | 1.11.1.6 |
33262 | tween esterase | + | |
33262 | lecithinase | + | |
33262 | lipase | + | |
33262 | lysine decarboxylase | - | 4.1.1.18 |
33262 | ornithine decarboxylase | + | 4.1.1.17 |
33262 | protease | + | |
33262 | tryptophan deaminase | - | |
33262 | urease | + | 3.5.1.5 |
68382 | alkaline phosphatase | + | 3.1.3.1 |
68382 | esterase (C 4) | + | |
68382 | esterase lipase (C 8) | + | |
68382 | lipase (C 14) | - | |
68382 | leucine arylamidase | + | 3.4.11.1 |
68382 | valine arylamidase | + | |
68382 | cystine arylamidase | - | 3.4.11.3 |
68382 | trypsin | + | 3.4.21.4 |
68382 | alpha-chymotrypsin | + | 3.4.21.1 |
68382 | acid phosphatase | + | 3.1.3.2 |
68382 | naphthol-AS-BI-phosphohydrolase | + | |
68382 | alpha-galactosidase | - | 3.2.1.22 |
68382 | beta-galactosidase | - | 3.2.1.23 |
68382 | beta-glucuronidase | - | 3.2.1.31 |
68382 | alpha-glucosidase | + | 3.2.1.20 |
68382 | beta-glucosidase | - | 3.2.1.21 |
68382 | N-acetyl-beta-glucosaminidase | + | 3.2.1.52 |
68382 | alpha-mannosidase | - | 3.2.1.24 |
68382 | alpha-fucosidase | - | 3.2.1.51 |
API zym
@ref | Control | Alkaline phosphatase | Esterase | Esterase Lipase | Lipase | Leucine arylamidase | Valine arylamidase | Cystine arylamidase | Trypsin | alpha- Chymotrypsin | Acid phosphatase | Naphthol-AS-BI-phosphohydrolase | alpha- Galactosidase | beta- Galactosidase | beta- Glucuronidase | alpha- Glucosidase | beta- Glucosidase | N-acetyl-beta- glucosaminidase | alpha- Mannosidase | alpha- Fucosidase |
---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
33262 | - | + | + | + | - | + | + | - | + | + | + | + | - | - | - | + | - | + | - | - |
API biotype100
@ref | GLU | FRU | GAL | TRE | MNE | SBE | MEL | SAC | RAF | MTE | MAL | LAC | LTE | MbGa | MaGa | CEL | GEN | MbGu | ESC | RIB | ARA | XYL | PLE | RHA | FUC | MLZ | DARL | LARL | XLT | DUL | TAG | GLY | INO | MAN | MTL | TUR | SOR | ADO | HBG | LYX | ERY | MDG | 3MDG | SAT | MUC | LTAT | DTAT | MTAT | DMLT | LMLT | CATE | TATE | TTE | CIT | GRT | GAT | 2KG | 5KG | TRY | NAG | GNT | PAC | PAT | pOBE | QAT | GTE | mOBE | BAT | PPAT | CMT | TGE | BET | PCE | ABT | HIN | LAT | CAP | CYT | HIS | SUC | FUM | GRE | GYT | AVT | ETN | TTN | GLN | ITA | 3OBU | APT | GTT | PRO | DALA | LALA | SER | MNT | PROP | TYR | 2KT |
---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
33262 | + | - | - | - | - | - | - | + | - | + | + | - | - | - | - | - | - | - | - | + | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | + | - | + | + | - | - | - | - | - | - | - | - | - | + | - | - | - | - | - | - | - | - | - | - | - | - | + | - | - | + | + | - | + | + | + | - | + | - | - | - | + | - | + | + | + | - | - | + | + | - | + | + | + |
Isolation, sampling and environmental information
isolation
@ref | geographic location | country | origin.country | continent | sample type |
---|---|---|---|---|---|
33262 | Guangzhou | China | CHN | Asia | |
67770 | China | CHN | Asia | Activated sludge of a textile-printing wastewater treatment plant in Guangzhou | |
33262 | Guangzhou | China | CHN | Asia | Environment, Sludge of textile-printing waste-water treatment plant |
taxonmaps
- @ref: 69479
- File name: preview.99_4349.png
- url: https://microbeatlas.org/index.html?action=taxon&taxon_id=90_59;96_126;97_134;98_151;99_4349&stattab=map
- Last taxonomy: Shewanella decolorationis
- 16S sequence: AJ609571
- Sequence Identity:
- Total samples: 277
- soil counts: 8
- aquatic counts: 83
- animal counts: 185
- plant counts: 1
Safety information
risk assessment
- @ref: 33262
- biosafety level: 1
- biosafety level comment: Risk group (French classification)
Sequence information
16S sequences
- @ref: 67770
- description: Shewanella decolorationis partial 16S rRNA gene, type strain CCTCC M 203093T
- accession: AJ609571
- length: 1448
- database: ena
- NCBI tax ID: 1353536
GC content
- @ref: 67770
- GC-content: 49.3
- method: thermal denaturation, midpoint method (Tm)
External links
@ref: 33262
culture collection no.: CIP 108688, IAM 15094, CCTCC M 203093, JCM 21555, KCTC 23987, NBRC 103170
straininfo link
- @ref: 92169
- straininfo: 129189
literature
topic | Pubmed-ID | title | authors | journal | DOI | year | mesh | topic2 |
---|---|---|---|---|---|---|---|---|
Phylogeny | 15653901 | Shewanella decolorationis sp. nov., a dye-decolorizing bacterium isolated from activated sludge of a waste-water treatment plant. | Xu M, Guo J, Cen Y, Zhong X, Cao W, Sun G | Int J Syst Evol Microbiol | 10.1099/ijs.0.63157-0 | 2005 | Bacterial Typing Techniques, China, Coloring Agents/*metabolism, DNA, Bacterial/analysis, DNA, Ribosomal/analysis, Genes, rRNA, Molecular Sequence Data, Phylogeny, RNA, Ribosomal, 16S/genetics, Sewage/*microbiology, Shewanella/*classification/genetics/isolation & purification/physiology, *Textile Industry, Waste Disposal, Fluid/*methods | Genetics |
Phylogeny | 22437441 | Shewanella seohaensis sp. nov., isolated from a tidal flat sediment. | Yoon JH, Park S, Jung YT, Lee JS | Antonie Van Leeuwenhoek | 10.1007/s10482-012-9722-2 | 2012 | Base Composition, Cluster Analysis, Cytosol/chemistry, DNA Gyrase/genetics, DNA, Bacterial/chemistry/genetics, DNA, Ribosomal/chemistry/genetics, Fatty Acids/analysis, Geologic Sediments/*microbiology, Molecular Sequence Data, Nucleic Acid Hybridization, Phylogeny, RNA, Ribosomal, 16S/genetics, Republic of Korea, Sequence Analysis, DNA, Shewanella/chemistry/*classification/genetics/*isolation & purification, Ubiquinone/analysis, Vitamin K 2/analysis | Genetics |
Reference
@id | authors | title | doi/url | catalogue |
---|---|---|---|---|
20215 | Parte, A.C., Sardà Carbasse, J., Meier-Kolthoff, J.P., Reimer, L.C. and Göker, M. | List of Prokaryotic names with Standing in Nomenclature (LPSN) moves to the DSMZ | 10.1099/ijsem.0.004332 | |
33262 | Curators of the CIP | https://catalogue-crbip.pasteur.fr/fiche_catalogue.xhtml?crbip=CIP%20108688 | Collection of Institut Pasteur (CIP 108688) | |
67770 | Curators of the JCM | https://jcm.brc.riken.jp/en/ | ||
68382 | Automatically annotated from API zym | |||
69479 | João F Matias Rodrigues, Janko Tackmann,Gregor Rot, Thomas SB Schmidt, Lukas Malfertheiner, Mihai Danaila,Marija Dmitrijeva, Daniela Gaio, Nicolas Näpflin and Christian von Mering. University of Zurich. | MicrobeAtlas 1.0 beta | https://microbeatlas.org/ | |
92169 | Reimer, L.C., Lissin, A.,Schober, I., Witte,J.F., Podstawka, A., Lüken, H., Bunk, B.,Overmann, J. | StrainInfo: A central database for resolving microbial strain identifiers | 10.60712/SI-ID129189.1 |