Strain identifier
BacDive ID: 134698
Type strain: 
Species: Shewanella decolorationis
Strain history: IAM 15094 <-- M. Xu S12.
NCBI tax ID(s): 256839 (species)
version 7.1 (current version)
General
@ref: 33262
BacDive-ID: 134698
keywords: 16S sequence, Bacteria, mesophilic
description: Shewanella decolorationis CIP 108688 is a mesophilic bacterium of the family Shewanellaceae.
NCBI tax id
- NCBI tax id: 256839
- Matching level: species
strain history: IAM 15094 <-- M. Xu S12.
doi: 10.13145/bacdive134698.20221219.7.1
Name and taxonomic classification
LPSN
- @ref: 20215
- description: domain/bacteria
- keyword: phylum/pseudomonadota
- domain: Bacteria
- phylum: Pseudomonadota
- class: Gammaproteobacteria
- order: Alteromonadales
- family: Shewanellaceae
- genus: Shewanella
- species: Shewanella decolorationis
- full scientific name: Shewanella decolorationis Xu et al. 2005
@ref: 33262
domain: Bacteria
phylum: Proteobacteria
class: Gammaproteobacteria
order: Alteromonadales
family: Shewanellaceae
genus: Shewanella
species: Shewanella decolorationis
type strain: yes
Morphology
cell morphology
| @ref | motility | confidence | gram stain |
|---|---|---|---|
| 69480 | yes | 88.551 | |
| 69480 | 99.304 | negative |
Culture and growth conditions
culture medium
- @ref: 33262
- name: MEDIUM 72- for trypto casein soja agar
- growth: yes
- composition: Distilled water make up to (1000.000 ml);Trypto casein soy agar (40.000 g)
culture temp
| @ref | growth | type | temperature | range |
|---|---|---|---|---|
| 33262 | positive | growth | 25 | mesophilic |
| 67770 | positive | growth | 30 | mesophilic |
Physiology and metabolism
spore formation
- @ref: 69480
- spore formation: no
- confidence: 95.681
halophily
- @ref: 69480
- halophily level: non-halophilic
- confidence: 96.171
observation
- @ref: 67770
- observation: quinones: MK-7, Q-8, Q-7
Isolation, sampling and environmental information
isolation
| @ref | geographic location | country | origin.country | continent | sample type |
|---|---|---|---|---|---|
| 33262 | Guangzhou | China | CHN | Asia | |
| 67770 | China | CHN | Asia | Activated sludge of a textile-printing wastewater treatment plant in Guangzhou |
taxonmaps
- @ref: 69479
- File name: preview.99_4349.png
- url: https://microbeatlas.org/index.html?action=taxon&taxon_id=90_59;96_126;97_134;98_151;99_4349&stattab=map
- Last taxonomy: Shewanella decolorationis
- 16S sequence: AJ609571
- Sequence Identity:
- Total samples: 277
- soil counts: 8
- aquatic counts: 83
- animal counts: 185
- plant counts: 1
Sequence information
16S sequences
- @ref: 67770
- description: Shewanella decolorationis partial 16S rRNA gene, type strain CCTCC M 203093T
- accession: AJ609571
- length: 1448
- database: ena
- NCBI tax ID: 1353536
GC content
- @ref: 67770
- GC-content: 49.3
- method: thermal denaturation, midpoint method (Tm)
External links
@ref: 33262
culture collection no.: CIP 108688, IAM 15094, CCTCC M 203093, JCM 21555, KCTC 23987, NBRC 103170
straininfo link
| @ref | passport |
|---|---|
| 20218 | http://www.straininfo.net/strains/841028 |
| 20218 | http://www.straininfo.net/strains/382830 |
| 20218 | http://www.straininfo.net/strains/374029 |
literature
| topic | Pubmed-ID | title | authors | journal | DOI | year | mesh | topic2 |
|---|---|---|---|---|---|---|---|---|
| Phylogeny | 15653901 | Shewanella decolorationis sp. nov., a dye-decolorizing bacterium isolated from activated sludge of a waste-water treatment plant. | Xu M, Guo J, Cen Y, Zhong X, Cao W, Sun G | Int J Syst Evol Microbiol | 10.1099/ijs.0.63157-0 | 2005 | Bacterial Typing Techniques, China, Coloring Agents/*metabolism, DNA, Bacterial/analysis, DNA, Ribosomal/analysis, Genes, rRNA, Molecular Sequence Data, Phylogeny, RNA, Ribosomal, 16S/genetics, Sewage/*microbiology, Shewanella/*classification/genetics/isolation & purification/physiology, *Textile Industry, Waste Disposal, Fluid/*methods | Genetics |
| Phylogeny | 22437441 | Shewanella seohaensis sp. nov., isolated from a tidal flat sediment. | Yoon JH, Park S, Jung YT, Lee JS | Antonie Van Leeuwenhoek | 10.1007/s10482-012-9722-2 | 2012 | Base Composition, Cluster Analysis, Cytosol/chemistry, DNA Gyrase/genetics, DNA, Bacterial/chemistry/genetics, DNA, Ribosomal/chemistry/genetics, Fatty Acids/analysis, Geologic Sediments/*microbiology, Molecular Sequence Data, Nucleic Acid Hybridization, Phylogeny, RNA, Ribosomal, 16S/genetics, Republic of Korea, Sequence Analysis, DNA, Shewanella/chemistry/*classification/genetics/*isolation & purification, Ubiquinone/analysis, Vitamin K 2/analysis | Genetics |
Reference
| @id | authors | title | doi/url | journal | pubmed | catalogue |
|---|---|---|---|---|---|---|
| 20215 | Parte, A.C., Sardà Carbasse, J., Meier-Kolthoff, J.P., Reimer, L.C. and Göker, M. | List of Prokaryotic names with Standing in Nomenclature (LPSN) moves to the DSMZ | 10.1099/ijsem.0.004332 | |||
| 20218 | Verslyppe, B., De Smet, W., De Baets, B., De Vos, P., Dawyndt P. | StrainInfo introduces electronic passports for microorganisms. | 10.1016/j.syapm.2013.11.002 | Syst Appl Microbiol. 37: 42-50 2014 | 24321274 | |
| 33262 | Curators of the CIP | https://brclims.pasteur.fr/brcWeb/souche/detail/1/6344 | Collection of Institut Pasteur (CIP 108688) | |||
| 67770 | Curators of the JCM | https://jcm.brc.riken.jp/en/ | ||||
| 69479 | João F Matias Rodrigues, Janko Tackmann,Gregor Rot, Thomas SB Schmidt, Lukas Malfertheiner, Mihai Danaila,Marija Dmitrijeva, Daniela Gaio, Nicolas Näpflin and Christian von Mering. University of Zurich. | MicrobeAtlas 1.0 beta | https://microbeatlas.org/ | |||
| 69480 | Julia Koblitz, Joaquim Sardà, Lorenz Christian Reimer, Boyke Bunk, Jörg Overmann | Predictions based on genome sequence made in the Diaspora project (Digital Approaches for the Synthesis of Poorly Accessible Biodiversity Information) | https://diaspora-project.de/progress.html#genomes |