Strain identifier

BacDive ID: 134675

Type strain: Yes

Species: Giesbergeria anulus

Strain history: CIP <- 2003, NCIMB <- M.A. Williams, Spirillum anulus

NCBI tax ID(s): 180197 (species)

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General

@ref: 33175

BacDive-ID: 134675

keywords: genome sequence, 16S sequence, Bacteria, aerobe, mesophilic, motile

description: Giesbergeria anulus CIP 107877 is an aerobe, mesophilic, motile bacterium that was isolated from Pond water.

NCBI tax id

  • NCBI tax id: 180197
  • Matching level: species

strain history

@refhistory
67770IAM 14948 <-- IFO 14917 <-- Y. Terasaki <-- M. A. Williams.
33175CIP <- 2003, NCIMB <- M.A. Williams, Spirillum anulus

doi: 10.13145/bacdive134675.20230509.8.1

Name and taxonomic classification

LPSN

  • @ref: 20215
  • description: domain/bacteria
  • keyword: phylum/pseudomonadota
  • domain: Bacteria
  • phylum: Pseudomonadota
  • class: Betaproteobacteria
  • order: Burkholderiales
  • family: Comamonadaceae
  • genus: Giesbergeria
  • species: Giesbergeria anulus
  • full scientific name: Giesbergeria anulus (Williams and Rittenberg 1957) Grabovich et al. 2006

  • synonyms

    @refsynonym
    20215Aquaspirillum anulus
    20215Spirillum anulus

@ref: 33175

domain: Bacteria

phylum: Proteobacteria

class: Betaproteobacteria

order: Burkholderiales

family: Comamonadaceae

genus: Giesbergeria

species: Giesbergeria anulus

type strain: yes

Morphology

cell morphology

@refmotilityconfidencegram staincell shape
69480yes97.694
69480100negative
33175yesnegativerod-shaped

colony morphology

  • @ref: 58559
  • incubation period: 2 days

Culture and growth conditions

culture medium

@refnamegrowthcompositionlink
33175MEDIUM 65 - for Prolinoborus fasciculusyesDistilled water make up to (1000.000 ml);Manganese II sulphate monohydrate(2.000 mg);Magnesium sulphate heptahydrate (1.000 g);Agar (15.000 g);Ammonium sulphate (1.000 g);Peptone (10.000 g);Succinic acid (1.680 g);Ferric III chloride hexahydrate (2.000mg)
33175CIP Medium 65yeshttps://catalogue-crbip.pasteur.fr/fiche_milieu.xhtml?crbip=65

culture temp

@refgrowthtypetemperaturerange
33175positivegrowth25mesophilic
58559positivegrowth30mesophilic
67770positivegrowth30mesophilic
33175positivegrowth15-30
33175nogrowth5psychrophilic
33175nogrowth37mesophilic
33175nogrowth41thermophilic

Physiology and metabolism

oxygen tolerance

  • @ref: 58559
  • oxygen tolerance: aerobe

spore formation

@refspore formationconfidence
69481no100
69480no99.998

halophily

@refsaltgrowthtested relationconcentration
33175NaClpositivegrowth0 %
33175NaClnogrowth2 %
33175NaClnogrowth4 %
33175NaClnogrowth6 %
33175NaClnogrowth8 %
33175NaClnogrowth10 %

metabolite utilization

@refChebi-IDmetaboliteutilization activitykind of utilization tested
331754853esculin-hydrolysis
3317517632nitrate-reduction
3317516301nitrite-reduction

metabolite production

  • @ref: 33175
  • Chebi-ID: 35581
  • metabolite: indole
  • production: no

metabolite tests

@refChebi-IDmetabolitevoges-proskauer-testmethylred-test
3317515688acetoin-
3317517234glucose-

enzymes

@refvalueactivityec
33175oxidase+
33175beta-galactosidase-3.2.1.23
33175alcohol dehydrogenase-1.1.1.1
33175gelatinase-
33175catalase+1.11.1.6
33175gamma-glutamyltransferase-2.3.2.2
33175lysine decarboxylase-4.1.1.18
33175ornithine decarboxylase-4.1.1.17
33175phenylalanine ammonia-lyase-4.3.1.24
33175tryptophan deaminase-
33175urease-3.5.1.5
68382alkaline phosphatase+3.1.3.1
68382esterase (C 4)+
68382esterase lipase (C 8)+
68382lipase (C 14)-
68382leucine arylamidase+3.4.11.1
68382valine arylamidase-
68382cystine arylamidase-3.4.11.3
68382trypsin-3.4.21.4
68382alpha-chymotrypsin-3.4.21.1
68382acid phosphatase+3.1.3.2
68382naphthol-AS-BI-phosphohydrolase+
68382alpha-galactosidase-3.2.1.22
68382beta-galactosidase-3.2.1.23
68382beta-glucuronidase-3.2.1.31
68382alpha-glucosidase-3.2.1.20
68382beta-glucosidase-3.2.1.21
68382N-acetyl-beta-glucosaminidase-3.2.1.52
68382alpha-mannosidase-3.2.1.24
68382alpha-fucosidase-3.2.1.51

fatty acid profile

  • fatty acids

    @reffatty acidpercentageECL
    58559C12:04.112
    58559C14:05.114
    58559C15:0515
    58559C16:029.616
    58559C10:0 3OH5.311.423
    58559C16:1 ω7c5115.819
  • type of FA analysis: whole cell analysis
  • method/protocol: CCUG

API zym

@refControlAlkaline phosphataseEsteraseEsterase LipaseLipaseLeucine arylamidaseValine arylamidaseCystine arylamidaseTrypsinalpha- ChymotrypsinAcid phosphataseNaphthol-AS-BI-phosphohydrolasealpha- Galactosidasebeta- Galactosidasebeta- Glucuronidasealpha- Glucosidasebeta- GlucosidaseN-acetyl-beta- glucosaminidasealpha- Mannosidasealpha- Fucosidase
33175-+++-+----++--------

Isolation, sampling and environmental information

isolation

@refsample type
58559Pond water
67770Pond water
33175Environment, Pond water

isolation source categories

  • Cat1: #Environmental
  • Cat2: #Aquatic
  • Cat3: #Pond (small)

taxonmaps

  • @ref: 69479
  • File name: preview.99_23441.png
  • url: https://microbeatlas.org/index.html?action=taxon&taxon_id=90_1;96_9748;97_11746;98_17657;99_23441&stattab=map
  • Last taxonomy: Giesbergeria
  • 16S sequence: AB074527
  • Sequence Identity:
  • Total samples: 4040
  • soil counts: 266
  • aquatic counts: 2847
  • animal counts: 810
  • plant counts: 117

Safety information

risk assessment

  • @ref: 33175
  • biosafety level: 1
  • biosafety level comment: Risk group (French classification)

Sequence information

16S sequences

  • @ref: 67770
  • description: Aquaspirillum anulus gene for 16S rRNA, partial sequence
  • accession: AB074527
  • length: 1475
  • database: ena
  • NCBI tax ID: 180197

Genome sequences

@refdescriptionaccessionassembly leveldatabaseNCBI tax ID
66792Giesbergeria anulus strain ATCC 35958180197.3wgspatric180197
66792Giesbergeria anulus ATCC 359582597490351draftimg180197
67770Giesbergeria anulus ATCC 35958GCA_900111115scaffoldncbi180197

Genome-based predictions

predictions

traitpredictionconfidencetraining_data
spore-formingno100no
motileyes83.593no
gram-positiveno98.574no
anaerobicno93.789yes
aerobicyes81.521yes
halophileno97.129no
spore-formingno93.116no
glucose-utilno85.195no
flagellatedyes70.561no
thermophileno96.228yes
glucose-fermentno89.397no

External links

@ref: 33175

culture collection no.: CIP 107877, ATCC 35958, NCIMB 9012, NRRL B-2067, CCUG 49446, IAM 14948, IFO 14917, ATCC 11879, ATCC 19259, JCM 21430, NBRC 14917

straininfo link

  • @ref: 92156
  • straininfo: 890

Reference

@idauthorstitledoi/urlcataloguejournalpubmed
20215Parte, A.C., Sardà Carbasse, J., Meier-Kolthoff, J.P., Reimer, L.C. and Göker, M.List of Prokaryotic names with Standing in Nomenclature (LPSN) moves to the DSMZ10.1099/ijsem.0.004332
33175Curators of the CIPhttps://catalogue-crbip.pasteur.fr/fiche_catalogue.xhtml?crbip=CIP%20107877Collection of Institut Pasteur (CIP 107877)
58559Curators of the CCUGhttps://www.ccug.se/strain?id=49446Culture Collection University of Gothenburg (CCUG) (CCUG 49446)
66792Julia Koblitz, Joaquim Sardà, Lorenz Christian Reimer, Boyke Bunk, Jörg OvermannAutomatically annotated for the DiASPora project (Digital Approaches for the Synthesis of Poorly Accessible Biodiversity Information)https://diaspora-project.de/progress.html#genomes
66794Antje Chang, Lisa Jeske, Sandra Ulbrich, Julia Hofmann, Julia Koblitz, Ida Schomburg, Meina Neumann-Schaal, Dieter Jahn, Dietmar SchomburgBRENDA, the ELIXIR core data resource in 2021: new developments and updates10.1093/nar/gkaa1025Nucleic Acids Res. 49: D498-D508 202033211880
67770Curators of the JCMhttps://jcm.brc.riken.jp/en/
68382Automatically annotated from API zym
69479João F Matias Rodrigues, Janko Tackmann,Gregor Rot, Thomas SB Schmidt, Lukas Malfertheiner, Mihai Danaila,Marija Dmitrijeva, Daniela Gaio, Nicolas Näpflin and Christian von Mering. University of Zurich.MicrobeAtlas 1.0 betahttps://microbeatlas.org/
69480Julia Koblitz, Joaquim Sardà, Lorenz Christian Reimer, Boyke Bunk, Jörg OvermannPredictions based on genome sequence made in the Diaspora project (Digital Approaches for the Synthesis of Poorly Accessible Biodiversity Information)https://diaspora-project.de/progress.html#genomes
69481Xiao-Yin To, René Mreches, Martin Binder, Alice C. McHardy, Philipp C. MünchPredictions based on the model GenomeNet Sporulation v. 110.21203/rs.3.rs-2527258/v1
92156Reimer, L.C., Lissin, A.,Schober, I., Witte,J.F., Podstawka, A., Lüken, H., Bunk, B.,Overmann, J.StrainInfo: A central database for resolving microbial strain identifiers10.60712/SI-ID890.1