Strain identifier

BacDive ID: 134668

Type strain: No

Species: Pseudomonas stutzeri

Strain history: CIP <- 2002, CCUG <- J. Ursing, PHL, MAS, Malmö, Sweden

NCBI tax ID(s): 1196835 (strain), 203192 (species), 316 (species)

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General

@ref: 33158

BacDive-ID: 134668

keywords: genome sequence, Bacteria, aerobe, mesophilic, motile

description: Pseudomonas stutzeri CIP 107697 is an aerobe, mesophilic, motile bacterium that was isolated from Marine,naphthalene enrichment.

NCBI tax id

NCBI tax idMatching level
1196835strain
203192species
316species

strain history

  • @ref: 33158
  • history: CIP <- 2002, CCUG <- J. Ursing, PHL, MAS, Malmö, Sweden

doi: 10.13145/bacdive134668.20230509.8.1

Name and taxonomic classification

LPSN

  • @ref: 20215
  • description: domain/bacteria
  • keyword: phylum/pseudomonadota
  • domain: Bacteria
  • phylum: Pseudomonadota
  • class: Gammaproteobacteria
  • order: Pseudomonadales
  • family: Pseudomonadaceae
  • genus: Pseudomonas
  • species: Pseudomonas stutzeri
  • full scientific name: Pseudomonas stutzeri (Lehmann and Neumann 1896) Sijderius 1946 (Approved Lists 1980)

  • synonyms

    @refsynonym
    20215Stutzerimonas chloritidismutans
    20215Pseudomonas perfectomarinus
    20215Bacterium stutzeri
    20215Pseudomonas kunmingensis
    20215Pseudomonas chloritidismutans
    20215Stutzerimonas kunmingensis
    20215Stutzerimonas stutzeri
    20215Stutzerimonas perfectomarina
    20215Pseudomonas perfectomarina

@ref: 33158

domain: Bacteria

phylum: Proteobacteria

class: Gammaproteobacteria

order: Pseudomonadales

family: Pseudomonadaceae

genus: Pseudomonas

species: Pseudomonas stutzeri

type strain: no

Morphology

cell morphology

@refmotilityconfidencegram staincell shape
69480yes98.603
6948099.999negative
33158yesnegativerod-shaped

pigmentation

  • @ref: 33158
  • production: no
  • name: Pyocyanin

Culture and growth conditions

culture medium

@refnamegrowthcompositionlink
33158MEDIUM 72- for trypto casein soja agaryesDistilled water make up to (1000.000 ml);Trypto casein soy agar (40.000 g)
33158CIP Medium 72yeshttps://catalogue-crbip.pasteur.fr/fiche_milieu.xhtml?crbip=72

culture temp

@refgrowthtypetemperaturerange
33158positivegrowth30mesophilic
49551positivegrowth37mesophilic
33158positivegrowth5-41

Physiology and metabolism

oxygen tolerance

@refoxygen tolerance
49551aerobe
33158obligate aerobe

spore formation

@refspore formationconfidence
69481no100
69480no99.992

halophily

  • @ref: 33158
  • salt: NaCl
  • growth: positive
  • tested relation: growth
  • concentration: 0-10 %

metabolite utilization

@refChebi-IDmetaboliteutilization activitykind of utilization tested
6836925115malate+assimilation
6836917128adipate-assimilation
6836927689decanoate+assimilation
6836924265gluconate+assimilation
6836917306maltose+assimilation
6836959640N-acetylglucosamine-assimilation
6836916899D-mannitol+assimilation
6836916024D-mannose-assimilation
6836930849L-arabinose-assimilation
6836917634D-glucose+assimilation
683695291gelatin-hydrolysis
683694853esculin-hydrolysis
6836916199urea-hydrolysis
6836929016arginine-hydrolysis
6836917634D-glucose-fermentation
6836927897tryptophan-energy source
6836917632nitrate+reduction
3315816947citrate+carbon source
331584853esculin-hydrolysis
3315817632nitrate+reduction
3315816301nitrite+reduction
3315817632nitrate+respiration

antibiotic resistance

  • @ref: 33158
  • metabolite: 0129 (2,4-Diamino-6,7-di-iso-propylpteridine phosphate)
  • is antibiotic: yes
  • is sensitive: no
  • is resistant: yes

metabolite production

@refChebi-IDmetaboliteproduction
6836935581indoleno
3315835581indoleno

metabolite tests

  • @ref: 68369
  • Chebi-ID: 35581
  • metabolite: indole
  • indole test: -

enzymes

@refvalueactivityec
68369cytochrome oxidase+1.9.3.1
68369gelatinase-
68369beta-glucosidase-3.2.1.21
68369urease-3.5.1.5
68369arginine dihydrolase-3.5.3.6
33158oxidase+
33158beta-galactosidase-3.2.1.23
33158alcohol dehydrogenase-1.1.1.1
33158gelatinase-
33158amylase+
33158DNase-
33158caseinase-3.4.21.50
33158catalase+1.11.1.6
33158tween esterase+
33158lecithinase-
33158lipase-
33158lysine decarboxylase-4.1.1.18
33158ornithine decarboxylase-4.1.1.17
33158protease+
33158tryptophan deaminase-
33158urease-3.5.1.5
68382alkaline phosphatase+3.1.3.1
68382esterase (C 4)+
68382esterase lipase (C 8)+
68382lipase (C 14)-
68382leucine arylamidase+3.4.11.1
68382valine arylamidase+
68382cystine arylamidase-3.4.11.3
68382trypsin+3.4.21.4
68382alpha-chymotrypsin-3.4.21.1
68382acid phosphatase-3.1.3.2
68382naphthol-AS-BI-phosphohydrolase+
68382alpha-galactosidase-3.2.1.22
68382beta-galactosidase-3.2.1.23
68382beta-glucuronidase-3.2.1.31
68382alpha-glucosidase-3.2.1.20
68382beta-glucosidase-3.2.1.21
68382N-acetyl-beta-glucosaminidase-3.2.1.52
68382alpha-mannosidase-3.2.1.24
68382alpha-fucosidase-3.2.1.51

API zym

@refControlAlkaline phosphataseEsteraseEsterase LipaseLipaseLeucine arylamidaseValine arylamidaseCystine arylamidaseTrypsinalpha- ChymotrypsinAcid phosphataseNaphthol-AS-BI-phosphohydrolasealpha- Galactosidasebeta- Galactosidasebeta- Glucuronidasealpha- Glucosidasebeta- GlucosidaseN-acetyl-beta- glucosaminidasealpha- Mannosidasealpha- Fucosidase
33158-+++-++-+--+--------

API 20NE

@refNO3TRPGLU_ FermADH ArgUREESCGELPNPGGLU_ AssimARAMNEMANNAGMALGNTCAPADIMLTCITPACOX
49551+-------+--+-+++-+--+

API biotype100

@refGLUFRUGALTREMNESBEMELSACRAFMTEMALLACLTEMbGaMaGaCELGENMbGuESCRIBARAXYLPLERHAFUCMLZDARLLARLXLTDULTAGGLYINOMANMTLTURSORADOHBGLYXERYMDG3MDGSATMUCLTATDTATMTATDMLTLMLTCATETATETTECITGRTGAT2KG5KGTRYNAGGNTPACPATpOBEQATGTEmOBEBATPPATCMTTGEBETPCEABTHINLATCAPCYTHISSUCFUMGREGYTAVTETNTTNGLNITA3OBUAPTGTTPRODALALALASERMNTPROPTYR2KT
33158++-------++---------------+----+++---------++----++-++-----++------------+++++-++++---++++++++-+++-

Isolation, sampling and environmental information

isolation

@refsample type
49551Marine,naphthalene enrichment
33158Marine, naphthalene

isolation source categories

Cat1Cat2Cat3
#Engineered#Laboratory#Lab enrichment
#Environmental#Aquatic#Marine

Safety information

risk assessment

  • @ref: 33158
  • biosafety level: 1
  • biosafety level comment: Risk group (French classification)

Sequence information

Genome sequences

@refdescriptionaccessionassembly leveldatabaseNCBI tax ID
66792Stutzerimonas stutzeri CCUG 29243GCA_000267545completencbi1196835
66792Pseudomonas stutzeri AN10, CCUG 292432518645567completeimg1196835

Genome-based predictions

predictions

traitpredictionconfidencetraining_data
spore-formingno100no
motileyes88.788no
flagellatedyes87.166no
gram-positiveno98.685no
anaerobicno97.872no
aerobicyes92.811yes
halophileno79.805no
spore-formingno94.934no
thermophileno99.724yes
glucose-utilyes90.063yes
glucose-fermentno92.428yes

External links

@ref: 33158

culture collection no.: CIP 107697, CCUG 29243

straininfo link

  • @ref: 92150
  • straininfo: 56620

literature

  • topic: Genetics
  • Pubmed-ID: 23144395
  • title: Complete genome sequence of the naphthalene-degrading bacterium Pseudomonas stutzeri AN10 (CCUG 29243).
  • authors: Brunet-Galmes I, Busquets A, Pena A, Gomila M, Nogales B, Garcia-Valdes E, Lalucat J, Bennasar A, Bosch R
  • journal: J Bacteriol
  • DOI: 10.1128/JB.01753-12
  • year: 2012
  • mesh: Aerobiosis, DNA, Bacterial/*chemistry/*genetics, Gene Transfer, Horizontal, *Genome, Bacterial, Metabolic Networks and Pathways/genetics, Molecular Sequence Data, Naphthalenes/metabolism, Pseudomonas stutzeri/*genetics/metabolism, *Sequence Analysis, DNA
  • topic2: Metabolism

Reference

@idauthorstitledoi/urlcatalogue
20215Parte, A.C., Sardà Carbasse, J., Meier-Kolthoff, J.P., Reimer, L.C. and Göker, M.List of Prokaryotic names with Standing in Nomenclature (LPSN) moves to the DSMZ10.1099/ijsem.0.004332
33158Curators of the CIPhttps://catalogue-crbip.pasteur.fr/fiche_catalogue.xhtml?crbip=CIP%20107697Collection of Institut Pasteur (CIP 107697)
49551Curators of the CCUGhttps://www.ccug.se/strain?id=29243Culture Collection University of Gothenburg (CCUG) (CCUG 29243)
66792Julia Koblitz, Joaquim Sardà, Lorenz Christian Reimer, Boyke Bunk, Jörg OvermannAutomatically annotated for the DiASPora project (Digital Approaches for the Synthesis of Poorly Accessible Biodiversity Information)https://diaspora-project.de/progress.html#genomes
68369Automatically annotated from API 20NE
68382Automatically annotated from API zym
69480Julia Koblitz, Joaquim Sardà, Lorenz Christian Reimer, Boyke Bunk, Jörg OvermannPredictions based on genome sequence made in the Diaspora project (Digital Approaches for the Synthesis of Poorly Accessible Biodiversity Information)https://diaspora-project.de/progress.html#genomes
69481Xiao-Yin To, René Mreches, Martin Binder, Alice C. McHardy, Philipp C. MünchPredictions based on the model GenomeNet Sporulation v. 110.21203/rs.3.rs-2527258/v1
92150Reimer, L.C., Lissin, A.,Schober, I., Witte,J.F., Podstawka, A., Lüken, H., Bunk, B.,Overmann, J.StrainInfo: A central database for resolving microbial strain identifiers10.60712/SI-ID56620.1