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Strain identifier

BacDive ID: 134668

Type strain: No

Species: Pseudomonas stutzeri

NCBI tax ID(s): 1196835 (strain), 203192 (species), 316 (species)

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For citation purpose refer to the digital object identifier (doi) of the current version.
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General

@ref: 33158

BacDive-ID: 134668

keywords: genome sequence, Bacteria, aerobe, mesophilic

description: Pseudomonas stutzeri CIP 107697 is an aerobe, mesophilic bacterium that was isolated from Marine,naphthalene enrichment.

NCBI tax id

NCBI tax idMatching level
1196835strain
203192species
316species

doi: 10.13145/bacdive134668.20221219.7.1

Name and taxonomic classification

LPSN

  • @ref: 20215
  • description: domain/bacteria
  • keyword: phylum/pseudomonadota
  • domain: Bacteria
  • phylum: Pseudomonadota
  • class: Gammaproteobacteria
  • order: Pseudomonadales
  • family: Pseudomonadaceae
  • genus: Pseudomonas
  • species: Pseudomonas stutzeri
  • full scientific name: Pseudomonas stutzeri (Lehmann and Neumann 1896) Sijderius 1946 (Approved Lists 1980)

  • synonyms

    @refsynonym
    20215Stutzerimonas chloritidismutans
    20215Pseudomonas perfectomarinus
    20215Bacterium stutzeri
    20215Pseudomonas kunmingensis
    20215Pseudomonas chloritidismutans
    20215Stutzerimonas kunmingensis
    20215Stutzerimonas stutzeri
    20215Stutzerimonas perfectomarina
    20215Pseudomonas perfectomarina

@ref: 33158

domain: Bacteria

phylum: Proteobacteria

class: Gammaproteobacteria

order: Pseudomonadales

family: Pseudomonadaceae

genus: Pseudomonas

species: Pseudomonas stutzeri

type strain: no

Morphology

cell morphology

@refmotilityconfidencegram stain
69480yes94.546
6948099.578negative

Culture and growth conditions

culture medium

  • @ref: 33158
  • name: MEDIUM 72- for trypto casein soja agar
  • growth: yes
  • composition: Distilled water make up to (1000.000 ml);Trypto casein soy agar (40.000 g)

culture temp

@refgrowthtypetemperaturerange
33158positivegrowth30mesophilic
49551positivegrowth37mesophilic

Physiology and metabolism

oxygen tolerance

  • @ref: 49551
  • oxygen tolerance: aerobe

spore formation

  • @ref: 69480
  • spore formation: no
  • confidence: 97.977

halophily

  • @ref: 69480
  • halophily level: non-halophilic
  • confidence: 89.724

metabolite utilization

@refChebi-IDmetaboliteutilization activitykind of utilization tested
6836925115malate+assimilation
6836917128adipate-assimilation
6836927689decanoate+assimilation
6836924265gluconate+assimilation
6836917306maltose+assimilation
6836959640N-acetylglucosamine-assimilation
6836916899D-mannitol+assimilation
6836916024D-mannose-assimilation
6836930849L-arabinose-assimilation
6836917634D-glucose+assimilation
683695291gelatin-hydrolysis
683694853esculin-hydrolysis
6836916199urea-hydrolysis
6836929016arginine-hydrolysis
6836917634D-glucose-fermentation
6836927897tryptophan-energy source
6836917632nitrate+reduction

metabolite production

  • @ref: 68369
  • Chebi-ID: 35581
  • metabolite: indole
  • production: no

metabolite tests

  • @ref: 68369
  • Chebi-ID: 35581
  • metabolite: indole
  • indole test: -

enzymes

@refvalueactivityec
68369cytochrome oxidase+1.9.3.1
68369gelatinase-
68369beta-glucosidase-3.2.1.21
68369urease-3.5.1.5
68369arginine dihydrolase-3.5.3.6

API 20NE

@refNO3TRPGLU_ FermADH ArgUREESCGELPNPGGLU_ AssimARAMNEMANNAGMALGNTCAPADIMLTCITPACOX
49551+-------+--+-+++-+--+

Isolation, sampling and environmental information

isolation

  • @ref: 49551
  • sample type: Marine,naphthalene enrichment

isolation source categories

Cat1Cat2Cat3
#Engineered#Laboratory#Lab enrichment
#Environmental#Aquatic#Marine

Sequence information

Genome sequences

@refdescriptionaccessionassembly leveldatabaseNCBI tax ID
66792Pseudomonas stutzeri CCUG 29243 CCUG 29243GCA_000267545completencbi1196835
66792Pseudomonas stutzeri AN10, CCUG 292432518645567completeimg1196835

External links

@ref: 33158

culture collection no.: CIP 107697, CCUG 29243

straininfo link

@refpassport
20218http://www.straininfo.net/strains/324425
20218http://www.straininfo.net/strains/142748

literature

  • topic: Genetics
  • Pubmed-ID: 23144395
  • title: Complete genome sequence of the naphthalene-degrading bacterium Pseudomonas stutzeri AN10 (CCUG 29243).
  • authors: Brunet-Galmes I, Busquets A, Pena A, Gomila M, Nogales B, Garcia-Valdes E, Lalucat J, Bennasar A, Bosch R
  • journal: J Bacteriol
  • DOI: 10.1128/JB.01753-12
  • year: 2012
  • mesh: Aerobiosis, DNA, Bacterial/*chemistry/*genetics, Gene Transfer, Horizontal, *Genome, Bacterial, Metabolic Networks and Pathways/genetics, Molecular Sequence Data, Naphthalenes/metabolism, Pseudomonas stutzeri/*genetics/metabolism, *Sequence Analysis, DNA
  • topic2: Metabolism

Reference

@idauthorstitledoi/urljournalpubmedcatalogue
20215Parte, A.C., Sardà Carbasse, J., Meier-Kolthoff, J.P., Reimer, L.C. and Göker, M.List of Prokaryotic names with Standing in Nomenclature (LPSN) moves to the DSMZ10.1099/ijsem.0.004332
20218Verslyppe, B., De Smet, W., De Baets, B., De Vos, P., Dawyndt P.StrainInfo introduces electronic passports for microorganisms.10.1016/j.syapm.2013.11.002Syst Appl Microbiol. 37: 42-50 201424321274
33158Curators of the CIPhttps://brclims.pasteur.fr/brcWeb/souche/detail/1/5161 Collection of Institut Pasteur (CIP 107697)
49551Curators of the CCUGhttps://www.ccug.se/strain?id=29243Culture Collection University of Gothenburg (CCUG) (CCUG 29243)
66792Julia Koblitz, Joaquim Sardà, Lorenz Christian Reimer, Boyke Bunk, Jörg OvermannAutomatically annotated for the DiASPora project (Digital Approaches for the Synthesis of Poorly Accessible Biodiversity Information)https://diaspora-project.de/progress.html#genomes
68369Automatically annotated from API 20NE
69480Julia Koblitz, Joaquim Sardà, Lorenz Christian Reimer, Boyke Bunk, Jörg OvermannPredictions based on genome sequence made in the Diaspora project (Digital Approaches for the Synthesis of Poorly Accessible Biodiversity Information)https://diaspora-project.de/progress.html#genomes