Strain identifier

BacDive ID: 134658

Type strain: No

Species: Salmonella enterica

Strain history: CIP <- 1955, A. Felix, PHLS, London, UK: strain Ha 1, Salmonella paratyphi A

NCBI tax ID(s): 28901 (species)

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General

@ref: 33140

BacDive-ID: 134658

keywords: genome sequence, Bacteria, facultative anaerobe, mesophilic, motile

description: Salmonella enterica CIP 55.39 is a facultative anaerobe, mesophilic, motile bacterium of the family Enterobacteriaceae.

NCBI tax id

  • NCBI tax id: 28901
  • Matching level: species

strain history

@refhistory
331401955, A. Felix, PHLS, London, UK: strain Ha 1, Salmonella paratyphi A
33140CIP <- 1955, A. Felix, PHLS, London, UK: strain Ha 1, Salmonella paratyphi A

doi: 10.13145/bacdive134658.20230509.8.1

Name and taxonomic classification

LPSN

  • @ref: 20215
  • description: domain/bacteria
  • keyword: phylum/pseudomonadota
  • domain: Bacteria
  • phylum: Pseudomonadota
  • class: Gammaproteobacteria
  • order: Enterobacterales
  • family: Enterobacteriaceae
  • genus: Salmonella
  • species: Salmonella enterica
  • full scientific name: Salmonella enterica (ex Kauffmann and Edwards 1952) Le Minor and Popoff 1987

  • synonyms

    @refsynonym
    20215Bacillus typhi
    20215Bacillus typhimurium
    20215Bacillus enteritidis
    20215Bacillus choleraesuis
    20215Salmonella typhi
    20215Salmonella choleraesuis
    20215Salmonella paratyphi
    20215Salmonella typhimurium
    20215Salmonella enteritidis

@ref: 33140

domain: Bacteria

phylum: Proteobacteria

class: Gammaproteobacteria

order: Enterobacterales

family: Enterobacteriaceae

genus: Salmonella

species: Salmonella enterica

type strain: no

Morphology

cell morphology

@refmotilityconfidencegram staincell shape
69480yes94.137
6948099.994negative
33140yesnegativerod-shaped

colony morphology

  • @ref: 33140

Culture and growth conditions

culture medium

@refnamegrowthcompositionlink
33140MEDIUM 3 - Columbia agaryesColumbia agar (39.000 g);distilled water (1000.000 ml)
33140CIP Medium 3yeshttps://catalogue-crbip.pasteur.fr/fiche_milieu.xhtml?crbip=3

culture temp

@refgrowthtypetemperaturerange
33140positivegrowth30mesophilic
33140positivegrowth10-41
33140nogrowth5psychrophilic

Physiology and metabolism

oxygen tolerance

  • @ref: 33140
  • oxygen tolerance: facultative anaerobe

spore formation

@refspore formationconfidence
69481no100
69480no99.901

metabolite utilization

@refmetaboliteutilization activitykind of utilization testedChebi-ID
68371Potassium 5-ketogluconate+builds acid from
68371Potassium 2-ketogluconate-builds acid from
68371gluconate+builds acid from24265
68371L-arabitol-builds acid from18403
68371D-arabitol-builds acid from18333
68371L-fucose+builds acid from18287
68371D-fucose-builds acid from28847
68371D-tagatose+builds acid from16443
68371D-lyxose-builds acid from62318
68371turanose-builds acid from32528
68371gentiobiose-builds acid from28066
68371xylitol-builds acid from17151
68371glycogen-builds acid from28087
68371starch-builds acid from28017
68371raffinose-builds acid from16634
68371melezitose-builds acid from6731
68371inulin-builds acid from15443
68371trehalose+builds acid from27082
68371sucrose-builds acid from17992
68371melibiose+builds acid from28053
68371lactose-builds acid from17716
68371maltose+builds acid from17306
68371cellobiose-builds acid from17057
68371salicin-builds acid from17814
68371esculin-builds acid from4853
68371arbutin-builds acid from18305
68371amygdalin-builds acid from27613
68371N-acetylglucosamine+builds acid from59640
68371methyl alpha-D-glucopyranoside-builds acid from320061
68371methyl alpha-D-mannoside-builds acid from43943
68371D-sorbitol+builds acid from17924
68371D-mannitol+builds acid from16899
68371myo-inositol-builds acid from17268
68371galactitol+builds acid from16813
68371L-rhamnose+builds acid from62345
68371L-sorbose-builds acid from17266
68371D-mannose+builds acid from16024
68371D-fructose+builds acid from15824
68371D-glucose+builds acid from17634
68371D-galactose+builds acid from12936
68371methyl beta-D-xylopyranoside-builds acid from74863
68371ribitol-builds acid from15963
68371L-xylose-builds acid from65328
68371D-xylose-builds acid from65327
68371D-ribose+builds acid from16988
68371L-arabinose+builds acid from30849
68371D-arabinose-builds acid from17108
68371erythritol-builds acid from17113
68371glycerol+builds acid from17754
33140mannitol+fermentation29864
33140citrate-carbon source16947
33140esculin-hydrolysis4853
33140glucose+fermentation17234
33140lactose-fermentation17716
33140nitrate+reduction17632
33140nitrite-reduction16301
33140malonate-assimilation15792
33140sodium thiosulfate+builds gas from132112
33140glucose+degradation17234

antibiotic resistance

  • @ref: 33140
  • metabolite: 0129 (2,4-Diamino-6,7-di-iso-propylpteridine phosphate)
  • is antibiotic: yes
  • is sensitive: no
  • is resistant: yes

metabolite production

  • @ref: 33140
  • Chebi-ID: 35581
  • metabolite: indole
  • production: no

metabolite tests

@refChebi-IDmetabolitevoges-proskauer-testmethylred-test
3314015688acetoin-
3314017234glucose+

enzymes

@refvalueactivityec
33140oxidase-
33140beta-galactosidase-3.2.1.23
33140alcohol dehydrogenase-1.1.1.1
33140gelatinase-
33140catalase+1.11.1.6
33140lysine decarboxylase-4.1.1.18
33140ornithine decarboxylase+4.1.1.17
33140phenylalanine ammonia-lyase-4.3.1.24
33140tryptophan deaminase-
33140urease-3.5.1.5
68382alkaline phosphatase+3.1.3.1
68382esterase (C 4)+
68382esterase lipase (C 8)+
68382lipase (C 14)-
68382leucine arylamidase+3.4.11.1
68382valine arylamidase-
68382cystine arylamidase-3.4.11.3
68382trypsin-3.4.21.4
68382alpha-chymotrypsin-3.4.21.1
68382acid phosphatase+3.1.3.2
68382naphthol-AS-BI-phosphohydrolase+
68382alpha-galactosidase-3.2.1.22
68382beta-galactosidase-3.2.1.23
68382beta-glucuronidase-3.2.1.31
68382alpha-glucosidase+3.2.1.20
68382beta-glucosidase-3.2.1.21
68382N-acetyl-beta-glucosaminidase-3.2.1.52
68382alpha-mannosidase-3.2.1.24
68382alpha-fucosidase-3.2.1.51

API zym

@refControlAlkaline phosphataseEsteraseEsterase LipaseLipaseLeucine arylamidaseValine arylamidaseCystine arylamidaseTrypsinalpha- ChymotrypsinAcid phosphataseNaphthol-AS-BI-phosphohydrolasealpha- Galactosidasebeta- Galactosidasebeta- Glucuronidasealpha- Glucosidasebeta- GlucosidaseN-acetyl-beta- glucosaminidasealpha- Mannosidasealpha- Fucosidase
33140-+++-+----++---+----

API 50CHac

@refGLYERYDARALARARIBDXYLLXYLADOMDXGALGLUFRUMNESBERHADULINOMANSORMDMMDGNAGAMYARBESCSALCELMALLACMELSACTREINUMLZRAFAMDGLYGXLTGENTURLYXTAGDFUCLFUCDARLLARLGNT2KG5KG
33140+--++----++++-++-++--+-----+-+-+---------+-+--+-+

API biotype100

@refGLUFRUGALTREMNESBEMELSACRAFMTEMALLACLTEMbGaMaGaCELGENMbGuESCRIBARAXYLPLERHAFUCMLZDARLLARLXLTDULTAGGLYINOMANMTLTURSORADOHBGLYXERYMDG3MDGSATMUCLTATDTATMTATDMLTLMLTCATETATETTECITGRTGAT2KG5KGTRYNAGGNTPACPATpOBEQATGTEmOBEBATPPATCMTTGEBETPCEABTHINLATCAPCYTHISSUCFUMGREGYTAVTETNTTNGLNITA3OBUAPTGTTPRODALALALASERMNTPROPTYR2KT
33140+++++-+--++---+----++--++----+++-+--+-------------+--++----++----++--------+---++-+---+---++--+-+--

Isolation, sampling and environmental information

isolation

@refgeographic locationsample typecountryorigin.countrycontinentisolation date
33140Durazzo
33140DurrësUnknown sourceAlbaniaALBEurope1917

Safety information

risk assessment

  • @ref: 33140
  • biosafety level: 2
  • biosafety level comment: Risk group (French classification)

Sequence information

Genome sequences

@refdescriptionaccessionassembly leveldatabaseNCBI tax ID
66792Salmonella enterica subsp. enterica serovar Paratyphi A strain NCTC 838754388.72wgspatric54388
66792Salmonella enterica Paratyphi A NCTC 83872654587551draftimg54388

Genome-based predictions

predictions

traitpredictionconfidencetraining_data
spore-formingno100no
gram-positiveno98.741no
anaerobicno92.262no
halophileno93.75no
spore-formingno94.19no
glucose-utilyes92.735no
thermophileno98.55yes
aerobicyes72.9no
motileyes89.983no
flagellatedno52.326no
glucose-fermentyes94.016no

External links

@ref: 33140

culture collection no.: CIP 55.39, NCTC 8387

Reference

@idauthorstitledoi/urlcatalogue
20215Parte, A.C., Sardà Carbasse, J., Meier-Kolthoff, J.P., Reimer, L.C. and Göker, M.List of Prokaryotic names with Standing in Nomenclature (LPSN) moves to the DSMZ10.1099/ijsem.0.004332
33140Curators of the CIPhttps://catalogue-crbip.pasteur.fr/fiche_catalogue.xhtml?crbip=CIP%2055.39Collection of Institut Pasteur (CIP 55.39)
66792Julia Koblitz, Joaquim Sardà, Lorenz Christian Reimer, Boyke Bunk, Jörg OvermannAutomatically annotated for the DiASPora project (Digital Approaches for the Synthesis of Poorly Accessible Biodiversity Information)https://diaspora-project.de/progress.html#genomes
68371Automatically annotated from API 50CH acid
68382Automatically annotated from API zym
69480Julia Koblitz, Joaquim Sardà, Lorenz Christian Reimer, Boyke Bunk, Jörg OvermannPredictions based on genome sequence made in the Diaspora project (Digital Approaches for the Synthesis of Poorly Accessible Biodiversity Information)https://diaspora-project.de/progress.html#genomes
69481Xiao-Yin To, René Mreches, Martin Binder, Alice C. McHardy, Philipp C. MünchPredictions based on the model GenomeNet Sporulation v. 110.21203/rs.3.rs-2527258/v1