Strain identifier

BacDive ID: 134651

Type strain: Yes

Species: Brumimicrobium glaciale

Strain Designation: IC156

Strain history: CIP <- 2002, J. Bowman, Tasmania Univ., Tasmania, Australia: strain IC156

NCBI tax ID(s): 200475 (species)

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General

@ref: 33130

BacDive-ID: 134651

keywords: genome sequence, Bacteria, obligate aerobe, psychrophilic, Gram-negative

description: Brumimicrobium glaciale IC156 is an obligate aerobe, psychrophilic, Gram-negative bacterium of the family Crocinitomicaceae.

NCBI tax id

  • NCBI tax id: 200475
  • Matching level: species

strain history

@refhistory
331302002, J. Bowman, Tasmania Univ., Tasmania, Australia: strain IC156
33130CIP <- 2002, J. Bowman, Tasmania Univ., Tasmania, Australia: strain IC156

doi: 10.13145/bacdive134651.20230509.8.1

Name and taxonomic classification

LPSN

  • @ref: 20215
  • description: domain/bacteria
  • keyword: phylum/bacteroidota
  • domain: Bacteria
  • phylum: Bacteroidota
  • class: Flavobacteriia
  • order: Flavobacteriales
  • family: Crocinitomicaceae
  • genus: Brumimicrobium
  • species: Brumimicrobium glaciale
  • full scientific name: Brumimicrobium glaciale Bowman et al. 2003

@ref: 33130

domain: Bacteria

phylum: Bacteroidetes

class: Flavobacteriia

order: Flavobacteriales

family: Crocinitomicaceae

genus: Brumimicrobium

species: Brumimicrobium glaciale

strain designation: IC156

type strain: yes

Morphology

cell morphology

@refgram stainconfidencecell shapemotility
69480negative99.996
33130negativerod-shapedno

colony morphology

  • @ref: 33130
  • hemolysis ability: 1

pigmentation

  • @ref: 33130
  • production: no
  • name: Flexirubin

Culture and growth conditions

culture medium

@refnamegrowthcompositionlink
33130Marine agar (MA)yesDistilled water make up to (1000.000 ml);Marine agar (55.100 g)
33130CIP Medium 13yeshttps://catalogue-crbip.pasteur.fr/fiche_milieu.xhtml?crbip=13

culture temp

@refgrowthtypetemperaturerange
33130positivegrowth10psychrophilic
33130positivegrowth5-15psychrophilic
33130nogrowth25mesophilic
33130nogrowth30mesophilic
33130nogrowth37mesophilic
33130nogrowth41thermophilic
33130nogrowth45thermophilic

Physiology and metabolism

oxygen tolerance

  • @ref: 33130
  • oxygen tolerance: obligate aerobe

spore formation

@refspore formationconfidence
69481no99
69480no99.998

halophily

@refsaltgrowthtested relationconcentration
33130NaClpositivegrowth2-8 %
33130NaClnogrowth0 %
33130NaClnogrowth10 %

metabolite utilization

@refChebi-IDmetaboliteutilization activitykind of utilization tested
3313016947citrate-carbon source
331304853esculin-hydrolysis
33130606565hippurate+hydrolysis
3313017632nitrate-builds gas from
3313017632nitrate+reduction
3313016301nitrite-builds gas from
3313016301nitrite-reduction
3313015792malonate-assimilation

metabolite production

  • @ref: 33130
  • Chebi-ID: 35581
  • metabolite: indole
  • production: no

metabolite tests

@refChebi-IDmetabolitevoges-proskauer-testmethylred-test
3313015688acetoin-
3313017234glucose-

enzymes

@refvalueactivityec
33130oxidase+
33130beta-galactosidase-3.2.1.23
33130alcohol dehydrogenase-1.1.1.1
33130gelatinase+/-
33130amylase-
33130caseinase-3.4.21.50
33130catalase+1.11.1.6
33130tween esterase-
33130gamma-glutamyltransferase-2.3.2.2
33130lecithinase-
33130lipase-
33130lysine decarboxylase-4.1.1.18
33130ornithine decarboxylase-4.1.1.17
33130phenylalanine ammonia-lyase+4.3.1.24
33130protease-
33130tryptophan deaminase-
33130urease-3.5.1.5
68382alkaline phosphatase+3.1.3.1
68382esterase (C 4)+
68382esterase lipase (C 8)+
68382lipase (C 14)-
68382leucine arylamidase+3.4.11.1
68382valine arylamidase+
68382cystine arylamidase+3.4.11.3
68382trypsin-3.4.21.4
68382alpha-chymotrypsin-3.4.21.1
68382acid phosphatase-3.1.3.2
68382naphthol-AS-BI-phosphohydrolase-
68382alpha-galactosidase-3.2.1.22
68382beta-galactosidase-3.2.1.23
68382beta-glucuronidase-3.2.1.31
68382alpha-glucosidase-3.2.1.20
68382beta-glucosidase-3.2.1.21
68382N-acetyl-beta-glucosaminidase-3.2.1.52
68382alpha-mannosidase-3.2.1.24
68382alpha-fucosidase-3.2.1.51

API zym

@refControlAlkaline phosphataseEsteraseEsterase LipaseLipaseLeucine arylamidaseValine arylamidaseCystine arylamidaseTrypsinalpha- ChymotrypsinAcid phosphataseNaphthol-AS-BI-phosphohydrolasealpha- Galactosidasebeta- Galactosidasebeta- Glucuronidasealpha- Glucosidasebeta- GlucosidaseN-acetyl-beta- glucosaminidasealpha- Mannosidasealpha- Fucosidase
33130-+++-+++------------

Isolation, sampling and environmental information

isolation

@refcountryorigin.countrycontinentsample typeisolation date
33130AntarcticaATAAntarctica
33130AntarcticaATAAntarcticaEnvironment, Sea ice1997

Safety information

risk assessment

  • @ref: 33130
  • biosafety level: 1
  • biosafety level comment: Risk group (French classification)

Sequence information

Genome sequences

  • @ref: 66792
  • description: Brumimicrobium glaciale strain IC156
  • accession: 200475.3
  • assembly level: wgs
  • database: patric
  • NCBI tax ID: 200475

Genome-based predictions

predictions

traitpredictionconfidencetraining_data
spore-formingno99no
motileno88.556no
gram-positiveno98.327no
anaerobicno97.756no
aerobicyes91.868no
halophileyes51.792no
spore-formingno94.703no
glucose-utilyes84.971no
flagellatedno96.325no
thermophileno99.607yes
glucose-fermentno91.466no

External links

@ref: 33130

culture collection no.: CIP 107451, LMG 21434, ACAM 645

straininfo link

  • @ref: 92137
  • straininfo: 86444

Reference

@idauthorstitledoi/urlcatalogue
20215Parte, A.C., Sardà Carbasse, J., Meier-Kolthoff, J.P., Reimer, L.C. and Göker, M.List of Prokaryotic names with Standing in Nomenclature (LPSN) moves to the DSMZ10.1099/ijsem.0.004332
33130Curators of the CIPhttps://catalogue-crbip.pasteur.fr/fiche_catalogue.xhtml?crbip=CIP%20107451Collection of Institut Pasteur (CIP 107451)
66792Julia Koblitz, Joaquim Sardà, Lorenz Christian Reimer, Boyke Bunk, Jörg OvermannAutomatically annotated for the DiASPora project (Digital Approaches for the Synthesis of Poorly Accessible Biodiversity Information)https://diaspora-project.de/progress.html#genomes
68382Automatically annotated from API zym
69480Julia Koblitz, Joaquim Sardà, Lorenz Christian Reimer, Boyke Bunk, Jörg OvermannPredictions based on genome sequence made in the Diaspora project (Digital Approaches for the Synthesis of Poorly Accessible Biodiversity Information)https://diaspora-project.de/progress.html#genomes
69481Xiao-Yin To, René Mreches, Martin Binder, Alice C. McHardy, Philipp C. MünchPredictions based on the model GenomeNet Sporulation v. 110.21203/rs.3.rs-2527258/v1
92137Reimer, L.C., Lissin, A.,Schober, I., Witte,J.F., Podstawka, A., Lüken, H., Bunk, B.,Overmann, J.StrainInfo: A central database for resolving microbial strain identifiers10.60712/SI-ID86444.1