Strain identifier

BacDive ID: 134651

Type strain: Yes

Species: Brumimicrobium glaciale

Strain Designation: IC156

Strain history: CIP <- 2002, J. Bowman, Tasmania Univ., Tasmania, Australia: strain IC156

NCBI tax ID(s): 200475 (species)

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General

@ref: 33130

BacDive-ID: 134651

keywords: genome sequence, 16S sequence, Bacteria, obligate aerobe, psychrophilic, Gram-negative

description: Brumimicrobium glaciale IC156 is an obligate aerobe, psychrophilic, Gram-negative bacterium of the family Crocinitomicaceae.

NCBI tax id

  • NCBI tax id: 200475
  • Matching level: species

strain history

@refhistory
331302002, J. Bowman, Tasmania Univ., Tasmania, Australia: strain IC156
33130CIP <- 2002, J. Bowman, Tasmania Univ., Tasmania, Australia: strain IC156

doi: 10.13145/bacdive134651.20250331.9.3

Name and taxonomic classification

LPSN

  • @ref: 20215
  • description: domain/bacteria
  • keyword: phylum/bacteroidota
  • domain: Bacteria
  • phylum: Bacteroidota
  • class: Flavobacteriia
  • order: Flavobacteriales
  • family: Crocinitomicaceae
  • genus: Brumimicrobium
  • species: Brumimicrobium glaciale
  • full scientific name: Brumimicrobium glaciale Bowman et al. 2003

@ref: 33130

domain: Bacteria

phylum: Bacteroidetes

class: Flavobacteriia

order: Flavobacteriales

family: Crocinitomicaceae

genus: Brumimicrobium

species: Brumimicrobium glaciale

strain designation: IC156

type strain: yes

Morphology

cell morphology

@refmotilityconfidencegram staincell shape
125438no92.5
12543896.981negative
12543998.5negative
33130nonegativerod-shaped

colony morphology

  • @ref: 33130
  • hemolysis ability: 1

pigmentation

  • @ref: 33130
  • production: no
  • name: Flexirubin

Culture and growth conditions

culture medium

@refnamegrowthcompositionlink
33130Marine agar (MA)yesDistilled water make up to (1000.000 ml);Marine agar (55.100 g)
33130CIP Medium 13yeshttps://catalogue-crbip.pasteur.fr/fiche_milieu.xhtml?crbip=13

culture temp

@refgrowthtypetemperature
33130positivegrowth10
33130positivegrowth5-15
33130nogrowth25
33130nogrowth30
33130nogrowth37
33130nogrowth41
33130nogrowth45

Physiology and metabolism

oxygen tolerance

@refoxygen toleranceconfidence
33130obligate aerobe
125439obligate aerobe98.7

spore formation

@refspore formationconfidence
125438no91.994
125439no90.6

halophily

@refsaltgrowthtested relationconcentration
33130NaClpositivegrowth2-8 %
33130NaClnogrowth0 %
33130NaClnogrowth10 %

metabolite utilization

@refChebi-IDmetaboliteutilization activitykind of utilization tested
3313016947citrate-carbon source
331304853esculin-hydrolysis
33130606565hippurate+hydrolysis
3313017632nitrate-builds gas from
3313017632nitrate+reduction
3313016301nitrite-builds gas from
3313016301nitrite-reduction
3313015792malonate-assimilation

metabolite production

  • @ref: 33130
  • Chebi-ID: 35581
  • metabolite: indole
  • production: no

metabolite tests

@refChebi-IDmetabolitevoges-proskauer-testmethylred-test
3313015688acetoin-
3313017234glucose-

enzymes

@refvalueactivityec
68382alpha-fucosidase-3.2.1.51
68382N-acetyl-beta-glucosaminidase-3.2.1.52
68382beta-glucosidase-3.2.1.21
68382alpha-glucosidase-3.2.1.20
68382beta-glucuronidase-3.2.1.31
68382beta-galactosidase-3.2.1.23
68382alpha-galactosidase-3.2.1.22
68382naphthol-AS-BI-phosphohydrolase-
68382acid phosphatase-3.1.3.2
68382trypsin-3.4.21.4
68382alpha-chymotrypsin-3.4.21.1
68382cystine arylamidase+3.4.11.3
68382valine arylamidase+
68382lipase (C 14)-
68382esterase (C 4)+
68382esterase lipase (C 8)+
68382alkaline phosphatase+3.1.3.1
33130oxidase+
33130beta-galactosidase-3.2.1.23
33130alcohol dehydrogenase-1.1.1.1
33130gelatinase+/-
33130amylase-
33130caseinase-3.4.21.50
33130catalase+1.11.1.6
33130tween esterase-
33130gamma-glutamyltransferase-2.3.2.2
33130lecithinase-
33130lipase-
33130lysine decarboxylase-4.1.1.18
33130ornithine decarboxylase-4.1.1.17
33130phenylalanine ammonia-lyase+4.3.1.24
33130protease-
33130tryptophan deaminase-
33130urease-3.5.1.5
68382alpha-mannosidase-3.2.1.24
68382leucine arylamidase+3.4.11.1

API zym

@refControlAlkaline phosphataseEsteraseEsterase LipaseLipaseLeucine arylamidaseValine arylamidaseCystine arylamidaseTrypsinalpha- ChymotrypsinAcid phosphataseNaphthol-AS-BI-phosphohydrolasealpha- Galactosidasebeta- Galactosidasebeta- Glucuronidasealpha- Glucosidasebeta- GlucosidaseN-acetyl-beta- glucosaminidasealpha- Mannosidasealpha- Fucosidase
33130-+++-+++------------

Isolation, sampling and environmental information

isolation

@refcountryorigin.countrycontinentsample typeisolation date
33130AntarcticaATAAntarctica
33130AntarcticaATAAntarcticaEnvironment, Sea ice1997

Safety information

risk assessment

  • @ref: 33130
  • biosafety level: 1
  • biosafety level comment: Risk group (French classification)

Sequence information

16S sequences

  • @ref: 124043
  • description: Brumimicrobium glaciale strain ACAM 645 16S ribosomal RNA gene, partial sequence.
  • accession: AF521195
  • length: 1371
  • database: nuccore
  • NCBI tax ID: 200475

Genome sequences

  • @ref: 66792
  • description: Brumimicrobium glaciale strain IC156
  • accession: 200475.3
  • assembly level: wgs
  • database: patric
  • NCBI tax ID: 200475

Genome-based predictions

predictions

@refmodeltraitdescriptionpredictionconfidencetraining_data
125438gram-positivegram-positivePositive reaction to Gram-stainingno96.981no
125438anaerobicanaerobicAbility to grow under anoxygenic conditions (including facultative anaerobes)no97.123no
125438spore-formingspore-formingAbility to form endo- or exosporesno91.994no
125438aerobicaerobicAbility to grow under oxygenic conditions (including facultative aerobes)yes88.687yes
125438thermophilethermophilicAbility to grow at temperatures above or equal to 45°Cno95.425yes
125438motile2+flagellatedAbility to perform flagellated movementno92.5no
125439BacteriaNetspore_formationAbility to form endo- or exosporesno90.6
125439BacteriaNetmotilityAbility to perform movementno72.2
125439BacteriaNetgram_stainReaction to gram-stainingnegative98.5
125439BacteriaNetoxygen_toleranceOxygenic conditions needed for growthobligate aerobe98.7

External links

@ref: 33130

culture collection no.: CIP 107451, LMG 21434, ACAM 645

straininfo link

  • @ref: 92137
  • straininfo: 86444

Reference

@idauthorstitledoi/urlcatalogue
20215Parte, A.C., Sardà Carbasse, J., Meier-Kolthoff, J.P., Reimer, L.C. and Göker, M.List of Prokaryotic names with Standing in Nomenclature (LPSN) moves to the DSMZ10.1099/ijsem.0.004332
33130Curators of the CIPhttps://catalogue-crbip.pasteur.fr/fiche_catalogue.xhtml?crbip=CIP%20107451Collection of Institut Pasteur (CIP 107451)
66792Julia Koblitz, Joaquim Sardà, Lorenz Christian Reimer, Boyke Bunk, Jörg OvermannAutomatically annotated for the DiASPora project (Digital Approaches for the Synthesis of Poorly Accessible Biodiversity Information)https://diaspora-project.de/progress.html#genomes
68382Automatically annotated from API zym
92137Reimer, L.C., Lissin, A.,Schober, I., Witte,J.F., Podstawka, A., Lüken, H., Bunk, B.,Overmann, J.StrainInfo: A central database for resolving microbial strain identifiers10.60712/SI-ID86444.1
124043Isabel Schober, Julia KoblitzData extracted from sequence databases, automatically matched based on designation and taxonomy
125438Julia Koblitz, Lorenz Christian Reimer, Rüdiger Pukall, Jörg OvermannPredicting bacterial phenotypic traits through improved machine learning using high-quality, curated datasets10.1101/2024.08.12.607695
125439Philipp Münch, René Mreches, Martin Binder, Hüseyin Anil Gündüz, Xiao-Yin To, Alice McHardydeepG: Deep Learning for Genome Sequence Data. R package version 0.3.1https://github.com/GenomeNet/deepG