Strain identifier

BacDive ID: 134594

Type strain: Yes

Species: Anaeroglobus geminatus

Strain history: CIP <- 2000, J.P. Carlier, Inst. Pasteur, Paris, France, strain AIP 313-00 <- Jean-Pierre and Marchandin, Montpellier Hosp., Montpellier, France

NCBI tax ID(s): 156456 (species)

« back to strain detail view
For citation purpose refer to the digital object identifier (doi) of the current version.
Archive
version 8.1 (current version):
version 8:
version 7.1:
version 7:
version 6:
version 5:
version 4.1:
version 4:
version 3:
version 2.1:
version 8.1 (current version)

General

@ref: 33014

BacDive-ID: 134594

keywords: Bacteria, anaerobe, mesophilic, coccus-shaped

description: Anaeroglobus geminatus CIP 106856 is an anaerobe, mesophilic, coccus-shaped bacterium of the family Veillonellaceae.

NCBI tax id

  • NCBI tax id: 156456
  • Matching level: species

strain history

  • @ref: 33014
  • history: CIP <- 2000, J.P. Carlier, Inst. Pasteur, Paris, France, strain AIP 313-00 <- Jean-Pierre and Marchandin, Montpellier Hosp., Montpellier, France

doi: 10.13145/bacdive134594.20230509.8.1

Name and taxonomic classification

LPSN

  • @ref: 20215
  • description: domain/bacteria
  • keyword: phylum/bacillota
  • domain: Bacteria
  • phylum: Bacillota
  • class: Negativicutes
  • order: Veillonellales
  • family: Veillonellaceae
  • genus: Anaeroglobus
  • species: Anaeroglobus geminatus
  • full scientific name: Anaeroglobus geminatus Carlier et al. 2002

@ref: 33014

domain: Bacteria

phylum: Firmicutes

class: Negativicutes

order: Veillonellales

family: Veillonellaceae

genus: Anaeroglobus

species: Anaeroglobus geminatus

type strain: yes

Morphology

cell morphology

  • @ref: 33014
  • cell shape: coccus-shaped
  • motility: no

colony morphology

  • @ref: 33014

Culture and growth conditions

culture medium

@refnamegrowthcompositionlink
33014MEDIUM 6 - Columbia agar with 10 % horse bloodyesDistilled water make up to (1000.000 ml);Columbia agar (39.000 g);Horseblood (100.000 ml)
33014CIP Medium 6yeshttps://catalogue-crbip.pasteur.fr/fiche_milieu.xhtml?crbip=6
33014CIP Medium 20yeshttps://catalogue-crbip.pasteur.fr/fiche_milieu.xhtml?crbip=20

culture temp

@refgrowthtypetemperaturerange
33014positivegrowth37mesophilic
56475positivegrowth37mesophilic

Physiology and metabolism

oxygen tolerance

@refoxygen tolerance
56475anaerobe
33014anaerobe

metabolite utilization

@refChebi-IDmetaboliteutilization activitykind of utilization tested
330144853esculin-hydrolysis
3301417632nitrate-reduction
3301416301nitrite-reduction

metabolite production

  • @ref: 33014
  • Chebi-ID: 35581
  • metabolite: indole
  • production: no

enzymes

@refvalueactivityec
33014oxidase-
33014beta-galactosidase+3.2.1.23
33014gelatinase-
33014catalase-1.11.1.6
33014urease-3.5.1.5
68382alkaline phosphatase-3.1.3.1
68382esterase (C 4)-
68382esterase lipase (C 8)-
68382lipase (C 14)-
68382leucine arylamidase-3.4.11.1
68382valine arylamidase-
68382cystine arylamidase-3.4.11.3
68382trypsin-3.4.21.4
68382alpha-chymotrypsin-3.4.21.1
68382acid phosphatase-3.1.3.2
68382naphthol-AS-BI-phosphohydrolase+
68382alpha-galactosidase-3.2.1.22
68382beta-galactosidase-3.2.1.23
68382beta-glucuronidase-3.2.1.31
68382alpha-glucosidase-3.2.1.20
68382beta-glucosidase+3.2.1.21
68382N-acetyl-beta-glucosaminidase-3.2.1.52
68382alpha-mannosidase-3.2.1.24
68382alpha-fucosidase-3.2.1.51

fatty acid profile

  • fatty acids

    @reffatty acidpercentageECL
    56475C12:012.612
    56475C14:0714
    56475C16:010.816
    56475C18:0518
    56475C13:0 iso3.312.612
    56475C14:0 3OH/C16:1 ISO I11.515.485
    56475C15:0 ISO2.714.621
    56475C16:1 ω9c3.415.774
    56475C17:0 iso2.516.629
    56475C17:1 ISO I/C16:0 DMA7.516.481
    56475C17:1 ω6c3.616.862
    56475C18:1 ω9c4.217.769
    56475C18:2 ω6,9c/C18:0 ANTE3.517.724
    56475Unidentified4.810.913
    56475Unidentified3.214.948
    56475Unidentified2.816.238
    56475Unidentified2.417.102
    56475Unidentified2.517.319
    56475unknown 14.5033.114.503
  • type of FA analysis: whole cell analysis
  • method/protocol: CCUG

API zym

@refControlAlkaline phosphataseEsteraseEsterase LipaseLipaseLeucine arylamidaseValine arylamidaseCystine arylamidaseTrypsinalpha- ChymotrypsinAcid phosphataseNaphthol-AS-BI-phosphohydrolasealpha- Galactosidasebeta- Galactosidasebeta- Glucuronidasealpha- Glucosidasebeta- GlucosidaseN-acetyl-beta- glucosaminidasealpha- Mannosidasealpha- Fucosidase
33014-----------+----+---

Isolation, sampling and environmental information

isolation

@refgeographic locationcountryorigin.countrycontinentsample typesampling date
33014MontpellierFranceFRAEurope
56475MontpelierFranceFRAEuropeHuman wound,post-operative,70-yr-old woman2000-06-01
33014MontpellierFranceFRAEuropeHuman, Gastric fluid

isolation source categories

Cat1Cat2Cat3
#Host#Human#Female
#Host Body-Site#Other#Wound
#Infection#Medical environment

Safety information

risk assessment

  • @ref: 33014
  • biosafety level: 1
  • biosafety level comment: Risk group (French classification)

External links

@ref: 33014

culture collection no.: CIP 106856, CCUG 44773, AIP 313-00

straininfo link

  • @ref: 92093
  • straininfo: 87790

literature

  • topic: Phylogeny
  • Pubmed-ID: 12054267
  • title: Anaeroglobus geminatus gen. nov., sp. nov., a novel member of the family Veillonellaceae.
  • authors: Carlier JP, Marchandin H, Jumas-Bilak E, Lorin V, Henry C, Carriere C, Jean-Pierre H
  • journal: Int J Syst Evol Microbiol
  • DOI: 10.1099/00207713-52-3-983
  • year: 2002
  • mesh: Aged, Anaerobiosis, Anastomosis, Surgical/adverse effects, Bacterial Typing Techniques, Body Fluids/*microbiology, DNA, Ribosomal/analysis, Esophagus/surgery, Female, Gastrectomy/*adverse effects, Gram-Negative Bacterial Infections/*microbiology, Humans, Jejunum/surgery, Molecular Sequence Data, Phenotype, Phylogeny, Postoperative Period, RNA, Ribosomal, 16S/genetics, Sequence Analysis, DNA, Veillonellaceae/*classification/genetics
  • topic2: Pathogenicity

Reference

@idauthorstitledoi/urlcatalogue
20215Parte, A.C., Sardà Carbasse, J., Meier-Kolthoff, J.P., Reimer, L.C. and Göker, M.List of Prokaryotic names with Standing in Nomenclature (LPSN) moves to the DSMZ10.1099/ijsem.0.004332
33014Curators of the CIPhttps://catalogue-crbip.pasteur.fr/fiche_catalogue.xhtml?crbip=CIP%20106856Collection of Institut Pasteur (CIP 106856)
56475Curators of the CCUGhttps://www.ccug.se/strain?id=44773Culture Collection University of Gothenburg (CCUG) (CCUG 44773)
68382Automatically annotated from API zym
92093Reimer, L.C., Lissin, A.,Schober, I., Witte,J.F., Podstawka, A., Lüken, H., Bunk, B.,Overmann, J.StrainInfo: A central database for resolving microbial strain identifiers10.60712/SI-ID87790.1