Strain identifier
BacDive ID: 13457
Type strain:
Species: Saccharopolyspora thermophila
Strain Designation: 216
Strain history: Z. Liu 216.
NCBI tax ID(s): 89367 (species)
General
@ref: 11872
BacDive-ID: 13457
DSM-Number: 44575
keywords: 16S sequence, Bacteria, thermophilic
description: Saccharopolyspora thermophila 216 is a thermophilic bacterium that was isolated from grassland soil.
NCBI tax id
- NCBI tax id: 89367
- Matching level: species
strain history
@ref | history |
---|---|
11872 | <- IFO |
67770 | Z. Liu 216. |
doi: 10.13145/bacdive13457.20230509.8.1
Name and taxonomic classification
LPSN
- @ref: 20215
- description: domain/bacteria
- keyword: phylum/actinomycetota
- domain: Bacteria
- phylum: Actinomycetota
- class: Actinomycetes
- order: Pseudonocardiales
- family: Pseudonocardiaceae
- genus: Saccharopolyspora
- species: Saccharopolyspora thermophila
- full scientific name: Saccharopolyspora thermophila Lu et al. 2001
@ref: 11872
domain: Bacteria
phylum: Actinobacteria
class: Actinobacteria
order: Actinomycetales
family: Pseudonocardiaceae
genus: Saccharopolyspora
species: Saccharopolyspora thermophila
full scientific name: Saccharopolyspora thermophila Lu et al. 2001
strain designation: 216
type strain: yes
Culture and growth conditions
culture medium
- @ref: 11872
- name: CYC-MEDIUM (modified following Cross and Attwell,1973) (DSMZ Medium 550)
- growth: yes
- link: https://mediadive.dsmz.de/medium/550
- composition: Name: CYC-MEDIUM (modified following Cross and Attwell,1973) (DSMZ Medium 550) Composition: Czapek Dox agar 48.0 g/l Agar 20.0 g/l Casamino acids 6.1 g/l Yeast extract 2.0 g/l Tryptophan 0.02 g/l Distilled water
culture temp
@ref | growth | type | temperature | range |
---|---|---|---|---|
11872 | positive | growth | 45 | thermophilic |
67770 | positive | growth | 50 | thermophilic |
Physiology and metabolism
observation
- @ref: 67770
- observation: quinones: MK-9(H6), MK-9(H10)
Isolation, sampling and environmental information
isolation
@ref | sample type | geographic location | country | origin.country | continent |
---|---|---|---|---|---|
11872 | grassland soil | Nanning, Guangxi Province | China | CHN | Asia |
67770 | Grassland soil | Nanning, Guangxi Province, south China | China | CHN | Asia |
isolation source categories
Cat1 | Cat2 | Cat3 |
---|---|---|
#Environmental | #Terrestrial | #Grassland |
#Environmental | #Terrestrial | #Soil |
Safety information
risk assessment
- @ref: 11872
- biosafety level: 1
- biosafety level comment: Risk group (German classification)
Sequence information
16S sequences
@ref | description | accession | length | database | NCBI tax ID |
---|---|---|---|---|---|
11872 | Saccharopolyspora thermophila strain 216 16S ribosomal RNA gene, partial sequence | AF127526 | 1441 | ena | 89367 |
67770 | Saccharopolyspora thermophila gene for 16S ribosomal RNA, partial sequence, strain: JCM 10664 | LC076550 | 1478 | ena | 89367 |
GC content
@ref | GC-content | method |
---|---|---|
11872 | 73.1 | |
67770 | 67 | thermal denaturation, midpoint method (Tm) |
External links
@ref: 11872
culture collection no.: DSM 44575, AS 4.1511, IFO 16346, JCM 10664, NBRC 16346, CGMCC 4.1511, KCTC 19903
straininfo link
- @ref: 82649
- straininfo: 50683
literature
- topic: Phylogeny
- Pubmed-ID: 11321076
- title: Saccharopolyspora flava sp. nov. and Saccharopolyspora thermophila sp.nov., novel actinomycetes from soil.
- authors: Lu Z, Liu Z, Wang L, Zhang Y, Qi W, Goodfellow M
- journal: Int J Syst Evol Microbiol
- DOI: 10.1099/00207713-51-2-319
- year: 2001
- mesh: Bacterial Typing Techniques, DNA, Bacterial/genetics, DNA, Ribosomal/genetics, Molecular Sequence Data, RNA, Ribosomal, 16S/genetics, Saccharopolyspora/*classification/cytology/metabolism, *Soil Microbiology, Terminology as Topic
- topic2: Genetics
Reference
@id | authors | catalogue | doi/url | title |
---|---|---|---|---|
11872 | Curators of the DSMZ | Leibniz Institut DSMZ-Deutsche Sammlung von Mikroorganismen und Zellkulturen GmbH (DSM 44575) | https://www.dsmz.de/collection/catalogue/details/culture/DSM-44575 | |
20215 | Parte, A.C., Sardà Carbasse, J., Meier-Kolthoff, J.P., Reimer, L.C. and Göker, M. | 10.1099/ijsem.0.004332 | List of Prokaryotic names with Standing in Nomenclature (LPSN) moves to the DSMZ | |
67770 | Curators of the JCM | https://jcm.brc.riken.jp/en/ | ||
82649 | Reimer, L.C., Lissin, A.,Schober, I., Witte,J.F., Podstawka, A., Lüken, H., Bunk, B.,Overmann, J. | 10.60712/SI-ID50683.1 | StrainInfo: A central database for resolving microbial strain identifiers |