Strain identifier

BacDive ID: 13457

Type strain: Yes

Species: Saccharopolyspora thermophila

Strain Designation: 216

Strain history: Z. Liu 216.

NCBI tax ID(s): 89367 (species)

For citation purpose refer to the digital object identifier (doi) of the current version.
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General

@ref: 11872

BacDive-ID: 13457

DSM-Number: 44575

keywords: 16S sequence, Bacteria, thermophilic

description: Saccharopolyspora thermophila 216 is a thermophilic bacterium that was isolated from grassland soil.

NCBI tax id

  • NCBI tax id: 89367
  • Matching level: species

strain history

@refhistory
11872<- IFO
67770Z. Liu 216.

doi: 10.13145/bacdive13457.20230509.8.1

Name and taxonomic classification

LPSN

  • @ref: 20215
  • description: domain/bacteria
  • keyword: phylum/actinomycetota
  • domain: Bacteria
  • phylum: Actinomycetota
  • class: Actinomycetes
  • order: Pseudonocardiales
  • family: Pseudonocardiaceae
  • genus: Saccharopolyspora
  • species: Saccharopolyspora thermophila
  • full scientific name: Saccharopolyspora thermophila Lu et al. 2001

@ref: 11872

domain: Bacteria

phylum: Actinobacteria

class: Actinobacteria

order: Actinomycetales

family: Pseudonocardiaceae

genus: Saccharopolyspora

species: Saccharopolyspora thermophila

full scientific name: Saccharopolyspora thermophila Lu et al. 2001

strain designation: 216

type strain: yes

Culture and growth conditions

culture medium

  • @ref: 11872
  • name: CYC-MEDIUM (modified following Cross and Attwell,1973) (DSMZ Medium 550)
  • growth: yes
  • link: https://mediadive.dsmz.de/medium/550
  • composition: Name: CYC-MEDIUM (modified following Cross and Attwell,1973) (DSMZ Medium 550) Composition: Czapek Dox agar 48.0 g/l Agar 20.0 g/l Casamino acids 6.1 g/l Yeast extract 2.0 g/l Tryptophan 0.02 g/l Distilled water

culture temp

@refgrowthtypetemperaturerange
11872positivegrowth45thermophilic
67770positivegrowth50thermophilic

Physiology and metabolism

observation

  • @ref: 67770
  • observation: quinones: MK-9(H6), MK-9(H10)

Isolation, sampling and environmental information

isolation

@refsample typegeographic locationcountryorigin.countrycontinent
11872grassland soilNanning, Guangxi ProvinceChinaCHNAsia
67770Grassland soilNanning, Guangxi Province, south ChinaChinaCHNAsia

isolation source categories

Cat1Cat2Cat3
#Environmental#Terrestrial#Grassland
#Environmental#Terrestrial#Soil

Safety information

risk assessment

  • @ref: 11872
  • biosafety level: 1
  • biosafety level comment: Risk group (German classification)

Sequence information

16S sequences

@refdescriptionaccessionlengthdatabaseNCBI tax ID
11872Saccharopolyspora thermophila strain 216 16S ribosomal RNA gene, partial sequenceAF1275261441ena89367
67770Saccharopolyspora thermophila gene for 16S ribosomal RNA, partial sequence, strain: JCM 10664LC0765501478ena89367

GC content

@refGC-contentmethod
1187273.1
6777067thermal denaturation, midpoint method (Tm)

External links

@ref: 11872

culture collection no.: DSM 44575, AS 4.1511, IFO 16346, JCM 10664, NBRC 16346, CGMCC 4.1511, KCTC 19903

straininfo link

  • @ref: 82649
  • straininfo: 50683

literature

  • topic: Phylogeny
  • Pubmed-ID: 11321076
  • title: Saccharopolyspora flava sp. nov. and Saccharopolyspora thermophila sp.nov., novel actinomycetes from soil.
  • authors: Lu Z, Liu Z, Wang L, Zhang Y, Qi W, Goodfellow M
  • journal: Int J Syst Evol Microbiol
  • DOI: 10.1099/00207713-51-2-319
  • year: 2001
  • mesh: Bacterial Typing Techniques, DNA, Bacterial/genetics, DNA, Ribosomal/genetics, Molecular Sequence Data, RNA, Ribosomal, 16S/genetics, Saccharopolyspora/*classification/cytology/metabolism, *Soil Microbiology, Terminology as Topic
  • topic2: Genetics

Reference

@idauthorscataloguedoi/urltitle
11872Curators of the DSMZLeibniz Institut DSMZ-Deutsche Sammlung von Mikroorganismen und Zellkulturen GmbH (DSM 44575)https://www.dsmz.de/collection/catalogue/details/culture/DSM-44575
20215Parte, A.C., Sardà Carbasse, J., Meier-Kolthoff, J.P., Reimer, L.C. and Göker, M.10.1099/ijsem.0.004332List of Prokaryotic names with Standing in Nomenclature (LPSN) moves to the DSMZ
67770Curators of the JCMhttps://jcm.brc.riken.jp/en/
82649Reimer, L.C., Lissin, A.,Schober, I., Witte,J.F., Podstawka, A., Lüken, H., Bunk, B.,Overmann, J.10.60712/SI-ID50683.1StrainInfo: A central database for resolving microbial strain identifiers