Strain identifier

BacDive ID: 134564

Type strain: No

Species: Acidovorax avenae

Strain Designation: B 385

Strain history: CIP <- 2000, CCUG <- 1984, LMG <- 1977, NCPPB, Pseudomonas rubrilineans <- 1961, A. Hayward: strain B 385

NCBI tax ID(s): 80867 (species)

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General

@ref: 32969

BacDive-ID: 134564

keywords: Bacteria, obligate aerobe, mesophilic, Gram-negative, motile, rod-shaped

description: Acidovorax avenae B 385 is an obligate aerobe, mesophilic, Gram-negative bacterium of the family Comamonadaceae.

NCBI tax id

  • NCBI tax id: 80867
  • Matching level: species

strain history

  • @ref: 32969
  • history: CIP <- 2000, CCUG <- 1984, LMG <- 1977, NCPPB, Pseudomonas rubrilineans <- 1961, A. Hayward: strain B 385

doi: 10.13145/bacdive134564.20230509.8.1

Name and taxonomic classification

LPSN

  • @ref: 20215
  • description: domain/bacteria
  • keyword: phylum/pseudomonadota
  • domain: Bacteria
  • phylum: Pseudomonadota
  • class: Betaproteobacteria
  • order: Burkholderiales
  • family: Comamonadaceae
  • genus: Acidovorax
  • species: Acidovorax avenae
  • full scientific name: Acidovorax avenae (Manns 1909) Willems et al. 1992

  • synonyms

    @refsynonym
    20215Phytomonas rubrilineans
    20215Paracidovorax avenae
    20215Pseudomonas avenae
    20215Pseudomonas rubrilineans

@ref: 32969

domain: Bacteria

phylum: Proteobacteria

class: Betaproteobacteria

order: Burkholderiales

family: Comamonadaceae

genus: Acidovorax

species: Acidovorax avenae

strain designation: B 385

type strain: no

Morphology

cell morphology

  • @ref: 32969
  • gram stain: negative
  • cell shape: rod-shaped
  • motility: yes

pigmentation

  • @ref: 32969
  • production: no
  • name: Pyocyanin

Culture and growth conditions

culture medium

@refnamegrowthcompositionlink
32969MEDIUM 3 - Columbia agaryesColumbia agar (39.000 g);distilled water (1000.000 ml)
32969CIP Medium 3yeshttps://catalogue-crbip.pasteur.fr/fiche_milieu.xhtml?crbip=3

culture temp

@refgrowthtypetemperaturerange
32969positivegrowth25mesophilic
32969positivegrowth25-30mesophilic
32969nogrowth5psychrophilic
32969nogrowth10psychrophilic
32969nogrowth37mesophilic
32969nogrowth41thermophilic

Physiology and metabolism

oxygen tolerance

  • @ref: 32969
  • oxygen tolerance: obligate aerobe

halophily

@refsaltgrowthtested relationconcentration
32969NaClpositivegrowth0-4 %
32969NaClnogrowth6 %
32969NaClnogrowth8 %
32969NaClnogrowth10 %

metabolite utilization

@refChebi-IDmetaboliteutilization activitykind of utilization tested
6836925115malate+assimilation
6836917128adipate+assimilation
6836927689decanoate+assimilation
6836924265gluconate+assimilation
6836917306maltose+assimilation
6836959640N-acetylglucosamine+assimilation
6836916899D-mannitol+assimilation
6836916024D-mannose+assimilation
6836930849L-arabinose+assimilation
6836917634D-glucose+assimilation
683695291gelatin-hydrolysis
683694853esculin-hydrolysis
6836916199urea+hydrolysis
6836929016arginine-hydrolysis
6836917634D-glucose-fermentation
6836927897tryptophan-energy source
6836917632nitrate+reduction
3296916947citrate+carbon source
329694853esculin-hydrolysis
3296917632nitrate+reduction
3296916301nitrite-reduction
3296917632nitrate-respiration

antibiotic resistance

  • @ref: 32969
  • metabolite: 0129 (2,4-Diamino-6,7-di-iso-propylpteridine phosphate)
  • is antibiotic: yes
  • is sensitive: no
  • is resistant: yes

metabolite production

@refChebi-IDmetaboliteproduction
6836935581indoleno
3296935581indoleno

metabolite tests

  • @ref: 68369
  • Chebi-ID: 35581
  • metabolite: indole
  • indole test: -

enzymes

@refvalueactivityec
68369cytochrome oxidase+1.9.3.1
68369gelatinase-
68369beta-glucosidase-3.2.1.21
68369urease+3.5.1.5
68369arginine dihydrolase-3.5.3.6
32969oxidase+
32969beta-galactosidase-3.2.1.23
32969alcohol dehydrogenase-1.1.1.1
32969gelatinase-
32969amylase-
32969DNase-
32969caseinase-3.4.21.50
32969catalase+1.11.1.6
32969tween esterase+
32969lecithinase-
32969lipase-
32969lysine decarboxylase-4.1.1.18
32969ornithine decarboxylase-4.1.1.17
32969protease+
32969tryptophan deaminase-
32969urease+3.5.1.5
68382alkaline phosphatase+3.1.3.1
68382esterase lipase (C 8)+
68382leucine arylamidase+3.4.11.1
68382valine arylamidase-
68382trypsin-3.4.21.4
68382alpha-chymotrypsin-3.4.21.1
68382alpha-galactosidase-3.2.1.22
68382beta-galactosidase-3.2.1.23
68382beta-glucuronidase-3.2.1.31
68382alpha-glucosidase-3.2.1.20
68382beta-glucosidase-3.2.1.21
68382N-acetyl-beta-glucosaminidase-3.2.1.52
68382alpha-mannosidase-3.2.1.24
68382alpha-fucosidase-3.2.1.51

fatty acid profile

  • fatty acids

    @reffatty acidpercentageECL
    46358C10:00.210
    46358C14:02.214
    46358C15:00.615
    46358C16:033.216
    46358C17:00.317
    46358C18:00.318
    46358C10:0 3OH2.711.423
    46358C11:0 ISO 3OH2.212.09
    46358C12:1 3OH0.313.289
    46358C13:0 ISO 2OH0.413.814
    46358C14:0 3OH/C16:1 ISO I2.515.485
    46358C16:1 ω7c39.815.819
    46358C17:0 CYCLO0.716.888
    46358C18:1 ω7c /12t/9t14.317.824
    46358unknown 14.5030.214.503
  • type of FA analysis: whole cell analysis
  • method/protocol: CCUG

API zym

@refControlAlkaline phosphataseEsteraseEsterase LipaseLipaseLeucine arylamidaseValine arylamidaseCystine arylamidaseTrypsinalpha- ChymotrypsinAcid phosphataseNaphthol-AS-BI-phosphohydrolasealpha- Galactosidasebeta- Galactosidasebeta- Glucuronidasealpha- Glucosidasebeta- GlucosidaseN-acetyl-beta- glucosaminidasealpha- Mannosidasealpha- Fucosidase
46358-+-+-+-+------------
32969-+++++----++--------

API 20NE

@refNO3TRPGLU_ FermADH ArgUREESCGELPNPGGLU_ AssimARAMNEMANNAGMALGNTCAPADIMLTCITPACOX
46358+---+---+++++++++++++

API biotype100

@refGLUFRUGALTREMNESBEMELSACRAFMTEMALLACLTEMbGaMaGaCELGENMbGuESCRIBARAXYLPLERHAFUCMLZDARLLARLXLTDULTAGGLYINOMANMTLTURSORADOHBGLYXERYMDG3MDGSATMUCLTATDTATMTATDMLTLMLTCATETATETTECITGRTGAT2KG5KGTRYNAGGNTPACPATpOBEQATGTEmOBEBATPPATCMTTGEBETPCEABTHINLATCAPCYTHISSUCFUMGREGYTAVTETNTTNGLNITA3OBUAPTGTTPRODALALALASERMNTPROPTYR2KT
32969+++-----------------++----+----+-+--+---------+-++++--+---+-+----+-------+-+--++++--+---++++-++--+-

Isolation, sampling and environmental information

isolation

@refgeographic locationcountryorigin.countrysample typesampling datecontinentisolation date
32969Reunion IslandReunion IslandFRA
46358Reunion IslandFRASaccharum officinarum1960Africa
32969Réunion IslandFranceFRASaccharum officinarumEurope1960

isolation source categories

  • Cat1: #Host
  • Cat2: #Plants
  • Cat3: #Herbaceous plants (Grass,Crops)

Safety information

risk assessment

  • @ref: 32969
  • biosafety level: 1
  • biosafety level comment: Risk group (French classification)

External links

@ref: 32969

culture collection no.: CIP 106434, CCUG 15837, ATCC 19307, LMG 2281, ICMP 254, NCPPB 920

straininfo link

  • @ref: 92072
  • straininfo: 101

Reference

@idauthorstitledoi/urlcatalogue
20215Parte, A.C., Sardà Carbasse, J., Meier-Kolthoff, J.P., Reimer, L.C. and Göker, M.List of Prokaryotic names with Standing in Nomenclature (LPSN) moves to the DSMZ10.1099/ijsem.0.004332
32969Curators of the CIPhttps://catalogue-crbip.pasteur.fr/fiche_catalogue.xhtml?crbip=CIP%20106434Collection of Institut Pasteur (CIP 106434)
46358Curators of the CCUGhttps://www.ccug.se/strain?id=15837Culture Collection University of Gothenburg (CCUG) (CCUG 15837)
68369Automatically annotated from API 20NE
68382Automatically annotated from API zym
92072Reimer, L.C., Lissin, A.,Schober, I., Witte,J.F., Podstawka, A., Lüken, H., Bunk, B.,Overmann, J.StrainInfo: A central database for resolving microbial strain identifiers10.60712/SI-ID101.1