Strain identifier

BacDive ID: 134494

Type strain: Yes

Species: Marinobacter excellens

Strain Designation: Fg86

Strain history: CIP <- 2002, E. Ivanova, Swinburne Inst., Victoria, Australia: strain: Fg86

NCBI tax ID(s): 218670 (species)

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General

@ref: 32847

BacDive-ID: 134494

keywords: Bacteria, mesophilic, Gram-negative, motile

description: Marinobacter excellens Fg86 is a mesophilic, Gram-negative, motile bacterium of the family Alteromonadaceae.

NCBI tax id

  • NCBI tax id: 218670
  • Matching level: species

strain history

@refhistory
328472002, E. Ivanova, Swinburne Inst., Victoria, Australia: strain: Fg86
32847CIP <- 2002, E. Ivanova, Swinburne Inst., Victoria, Australia: strain: Fg86

doi: 10.13145/bacdive134494.20230509.8.1

Name and taxonomic classification

LPSN

  • @ref: 20215
  • description: domain/bacteria
  • keyword: phylum/pseudomonadota
  • domain: Bacteria
  • phylum: Pseudomonadota
  • class: Gammaproteobacteria
  • order: Alteromonadales
  • family: Alteromonadaceae
  • genus: Marinobacter
  • species: Marinobacter excellens
  • full scientific name: Marinobacter excellens Gorshkova et al. 2003

@ref: 32847

domain: Bacteria

phylum: Proteobacteria

class: Gammaproteobacteria

order: Alteromonadales

family: Alteromonadaceae

genus: Marinobacter

species: Marinobacter excellens

strain designation: Fg86

type strain: yes

Morphology

cell morphology

  • @ref: 32847
  • gram stain: negative
  • motility: yes

Culture and growth conditions

culture medium

@refnamegrowthcompositionlink
32847Marine agar (MA)yesDistilled water make up to (1000.000 ml);Marine agar (55.100 g)
32847CIP Medium 13yeshttps://catalogue-crbip.pasteur.fr/fiche_milieu.xhtml?crbip=13

culture temp

@refgrowthtypetemperaturerange
32847positivegrowth25mesophilic
32847positivegrowth5-37
32847nogrowth41thermophilic

Physiology and metabolism

halophily

@refsaltgrowthtested relationconcentration
32847NaClnogrowth0 %
32847NaClnogrowth2 %
32847NaClnogrowth4 %
32847NaClnogrowth6 %
32847NaClnogrowth8 %
32847NaClnogrowth10 %

metabolite utilization

@refmetaboliteutilization activitykind of utilization testedChebi-ID
68371Potassium 5-ketogluconate-builds acid from
68371Potassium 2-ketogluconate-builds acid from
68371gluconate-builds acid from24265
68371L-arabitol-builds acid from18403
68371D-arabitol-builds acid from18333
68371L-fucose-builds acid from18287
68371D-fucose-builds acid from28847
68371D-tagatose-builds acid from16443
68371D-lyxose-builds acid from62318
68371turanose-builds acid from32528
68371gentiobiose-builds acid from28066
68371xylitol-builds acid from17151
68371glycogen-builds acid from28087
68371starch-builds acid from28017
68371raffinose-builds acid from16634
68371melezitose-builds acid from6731
68371inulin-builds acid from15443
68371trehalose-builds acid from27082
68371sucrose-builds acid from17992
68371melibiose-builds acid from28053
68371lactose-builds acid from17716
68371maltose-builds acid from17306
68371cellobiose-builds acid from17057
68371salicin-builds acid from17814
68371esculin-builds acid from4853
68371arbutin-builds acid from18305
68371amygdalin-builds acid from27613
68371N-acetylglucosamine-builds acid from59640
68371methyl alpha-D-glucopyranoside-builds acid from320061
68371methyl alpha-D-mannoside-builds acid from43943
68371D-sorbitol-builds acid from17924
68371D-mannitol-builds acid from16899
68371myo-inositol-builds acid from17268
68371galactitol-builds acid from16813
68371L-rhamnose-builds acid from62345
68371L-sorbose-builds acid from17266
68371D-mannose-builds acid from16024
68371D-fructose-builds acid from15824
68371D-glucose-builds acid from17634
68371D-galactose-builds acid from12936
68371methyl beta-D-xylopyranoside-builds acid from74863
68371ribitol-builds acid from15963
68371L-xylose-builds acid from65328
68371D-xylose-builds acid from65327
68371D-ribose-builds acid from16988
68371L-arabinose-builds acid from30849
68371D-arabinose-builds acid from17108
68371erythritol-builds acid from17113
68371glycerol-builds acid from17754
32847esculin-hydrolysis4853
32847nitrate+reduction17632
32847nitrite+reduction16301

metabolite production

  • @ref: 32847
  • Chebi-ID: 35581
  • metabolite: indole
  • production: no

enzymes

@refvalueactivityec
32847oxidase+
32847beta-galactosidase-3.2.1.23
32847alcohol dehydrogenase-1.1.1.1
32847gelatinase-
32847amylase+
32847caseinase-3.4.21.50
32847catalase+1.11.1.6
32847tween esterase+
32847gamma-glutamyltransferase+2.3.2.2
32847lecithinase+
32847lipase+
32847lysine decarboxylase-4.1.1.18
32847ornithine decarboxylase-4.1.1.17
32847phenylalanine ammonia-lyase-4.3.1.24
32847tryptophan deaminase-
32847urease-3.5.1.5
68382alkaline phosphatase+3.1.3.1
68382esterase (C 4)+
68382esterase lipase (C 8)+
68382lipase (C 14)-
68382leucine arylamidase-3.4.11.1
68382valine arylamidase-
68382cystine arylamidase-3.4.11.3
68382trypsin-3.4.21.4
68382alpha-chymotrypsin-3.4.21.1
68382acid phosphatase-3.1.3.2
68382naphthol-AS-BI-phosphohydrolase-
68382alpha-galactosidase-3.2.1.22
68382beta-galactosidase-3.2.1.23
68382beta-glucuronidase-3.2.1.31
68382alpha-glucosidase-3.2.1.20
68382beta-glucosidase-3.2.1.21
68382N-acetyl-beta-glucosaminidase+3.2.1.52
68382alpha-mannosidase-3.2.1.24
68382alpha-fucosidase-3.2.1.51

API zym

@refControlAlkaline phosphataseEsteraseEsterase LipaseLipaseLeucine arylamidaseValine arylamidaseCystine arylamidaseTrypsinalpha- ChymotrypsinAcid phosphataseNaphthol-AS-BI-phosphohydrolasealpha- Galactosidasebeta- Galactosidasebeta- Glucuronidasealpha- Glucosidasebeta- GlucosidaseN-acetyl-beta- glucosaminidasealpha- Mannosidasealpha- Fucosidase
32847-+++-------------+--

API 50CHac

@refGLYERYDARALARARIBDXYLLXYLADOMDXGALGLUFRUMNESBERHADULINOMANSORMDMMDGNAGAMYARBESCSALCELMALLACMELSACTREINUMLZRAFAMDGLYGXLTGENTURLYXTAGDFUCLFUCDARLLARLGNT2KG5KG
32847-------------------------------------------------

Isolation, sampling and environmental information

isolation

@refgeographic locationcountryorigin.countrycontinentsample typeisolation date
32847Sea of JapanRussiaRUSAsia
32847Sea of JapanRussian FederationRUSEuropeEnvironment, Sea water2002

Safety information

risk assessment

  • @ref: 32847
  • biosafety level: 1
  • biosafety level comment: Risk group (French classification)

External links

@ref: 32847

culture collection no.: CIP 107686, KMM 3809

straininfo link

  • @ref: 92010
  • straininfo: 99588

literature

  • topic: Phylogeny
  • Pubmed-ID: 14657148
  • title: Marinobacter excellens sp. nov., isolated from sediments of the Sea of Japan.
  • authors: Gorshkova NM, Ivanova EP, Sergeev AF, Zhukova NV, Alexeeva Y, Wright JP, Nicolau DV, Mikhailov VV, Christen R
  • journal: Int J Syst Evol Microbiol
  • DOI: 10.1099/ijs.0.02693-0
  • year: 2003
  • mesh: Alteromonadaceae/*classification/genetics/isolation & purification/ultrastructure, DNA, Bacterial/genetics, Genotype, Geologic Sediments/microbiology, Image Processing, Computer-Assisted, Japan, Microscopy, Atomic Force, Molecular Sequence Data, *Phylogeny, Seawater/microbiology
  • topic2: Genetics

Reference

@idauthorstitledoi/urlcatalogue
20215Parte, A.C., Sardà Carbasse, J., Meier-Kolthoff, J.P., Reimer, L.C. and Göker, M.List of Prokaryotic names with Standing in Nomenclature (LPSN) moves to the DSMZ10.1099/ijsem.0.004332
32847Curators of the CIPhttps://catalogue-crbip.pasteur.fr/fiche_catalogue.xhtml?crbip=CIP%20107686Collection of Institut Pasteur (CIP 107686)
68371Automatically annotated from API 50CH acid
68382Automatically annotated from API zym
92010Reimer, L.C., Lissin, A.,Schober, I., Witte,J.F., Podstawka, A., Lüken, H., Bunk, B.,Overmann, J.StrainInfo: A central database for resolving microbial strain identifiers10.60712/SI-ID99588.1